RNA–Protein interactions for RNA: ENST00000323668.11

TCOF1-201, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene TCOF1, Length 4,832 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-201ENST00000323668 WDR87Q6ZQQ6 2873 aa12.09□□□□□ -0.47
TCOF1-201ENST00000323668 ABCA4P78363 2273 aa12.09□□□□□ -0.47
TCOF1-201ENST00000323668 FAM57AQ8TBR7 257 aa12.09□□□□□ -0.47
TCOF1-201ENST00000323668 POLR3KQ9Y2Y1 108 aaPredicted RBP12.09□□□□□ -0.47
TCOF1-201ENST00000323668 ECSCRQ19T08 205 aa12.09□□□□□ -0.47
TCOF1-201ENST00000323668 ZNF114Q8NC26 417 aa12.09□□□□□ -0.47
TCOF1-201ENST00000323668 PYGO2Q9BRQ0 406 aa12.09□□□□□ -0.47
TCOF1-201ENST00000323668 MUC22E2RYF6 1773 aaPredicted RBP12.09□□□□□ -0.47
TCOF1-201ENST00000323668 A6NNC1 897 aa12.09□□□□□ -0.47
TCOF1-201ENST00000323668 B9A039 149 aa12.09□□□□□ -0.47
TCOF1-201ENST00000323668 ITGB1BP1O14713 200 aa12.09□□□□□ -0.47
TCOF1-201ENST00000323668 WNT2P09544 360 aa12.09□□□□□ -0.47
TCOF1-201ENST00000323668 RPS20P60866 119 aaKnown RBP12.09□□□□□ -0.47
TCOF1-201ENST00000323668 MLANAQ16655 118 aa12.09□□□□□ -0.47
TCOF1-201ENST00000323668 MYOZ3Q8TDC0 251 aa12.09□□□□□ -0.47
TCOF1-201ENST00000323668 APOHP02749 345 aaPredicted RBP12.08□□□□□ -0.47
TCOF1-201ENST00000323668 YPEL3P61236 119 aaPredicted RBP12.08□□□□□ -0.47
TCOF1-201ENST00000323668 CENPFP49454 3210 aa12.08□□□□□ -0.48
TCOF1-201ENST00000323668 PSG9Q00887 426 aa12.08□□□□□ -0.48
TCOF1-201ENST00000323668 Q0VG73 95 aa12.08□□□□□ -0.48
TCOF1-201ENST00000323668 C11orf1Q9H5F2 150 aa12.08□□□□□ -0.48
TCOF1-201ENST00000323668 CLEC5AQ9NY25 188 aa12.08□□□□□ -0.48
TCOF1-201ENST00000323668 TTC28Q96AY4 2481 aa12.08□□□□□ -0.48
TCOF1-201ENST00000323668 PCNX2A6NKB5 2137 aa12.08□□□□□ -0.48
TCOF1-201ENST00000323668 DLEU1O43261 78 aa12.08□□□□□ -0.48
TCOF1-201ENST00000323668 TEX45Q8NA69 505 aa12.08□□□□□ -0.48
TCOF1-201ENST00000323668 IGKV1-16P04430 117 aa12.08□□□□□ -0.48
TCOF1-201ENST00000323668 SAPCD1Q5SSQ6 148 aa12.08□□□□□ -0.48
TCOF1-201ENST00000323668 ATP5L2Q7Z4Y8 100 aa12.08□□□□□ -0.48
TCOF1-201ENST00000323668 OTORQ9NRC9 128 aa12.08□□□□□ -0.48
TCOF1-201ENST00000323668 GTF3C1Q12789 2109 aa12.08□□□□□ -0.48
TCOF1-201ENST00000323668 C3orf79P0CE67 100 aa12.07□□□□□ -0.48
TCOF1-201ENST00000323668 APOBEC3AP31941 199 aaPredicted RBP12.07□□□□□ -0.48
TCOF1-201ENST00000323668 COA6Q5JTJ3 125 aaKnown RBP12.07□□□□□ -0.48
TCOF1-201ENST00000323668 SPANXN1Q5VSR9 72 aa12.07□□□□□ -0.48
TCOF1-201ENST00000323668 RASL11AQ6T310 242 aa12.07□□□□□ -0.48
TCOF1-201ENST00000323668 NIT1Q86X76 327 aa12.07□□□□□ -0.48
TCOF1-201ENST00000323668 GUCD1Q96NT3 240 aa12.07□□□□□ -0.48
TCOF1-201ENST00000323668 PPP1R27Q86WC6 154 aa12.07□□□□□ -0.48
TCOF1-201ENST00000323668 MUC15Q8N387 334 aa12.07□□□□□ -0.48
TCOF1-201ENST00000323668 SNHG12Q9BXW3 62 aa12.07□□□□□ -0.48
TCOF1-201ENST00000323668 TMEM14BQ9NUH8 114 aa12.07□□□□□ -0.48
TCOF1-201ENST00000323668 CCL21O00585 134 aa12.07□□□□□ -0.48
TCOF1-201ENST00000323668 LINC00614P0C842 121 aa12.07□□□□□ -0.48
TCOF1-201ENST00000323668 RNASE2P10153 161 aaKnown RBP12.07□□□□□ -0.48
TCOF1-201ENST00000323668 RELQ04864 619 aaPredicted RBP12.07□□□□□ -0.48
TCOF1-201ENST00000323668 PMCHL2Q9BQD1 86 aa12.07□□□□□ -0.48
TCOF1-201ENST00000323668 SLC25A48Q6ZT89 311 aaKnown RBP12.07□□□□□ -0.48
TCOF1-201ENST00000323668 TMEM167AQ8TBQ9 72 aa12.07□□□□□ -0.48
TCOF1-201ENST00000323668 TMEM133Q9H2Q1 129 aa12.07□□□□□ -0.48
TCOF1-201ENST00000323668 TMEM131Q92545 1883 aa12.06□□□□□ -0.48
TCOF1-201ENST00000323668 C20orf144Q9BQM9 153 aa12.06□□□□□ -0.48
TCOF1-201ENST00000323668 MAP1LC3AQ9H492 121 aa12.06□□□□□ -0.48
TCOF1-201ENST00000323668 C15orf65H3BRN8 121 aa12.06□□□□□ -0.48
TCOF1-201ENST00000323668 DPM3Q9P2X0 92 aa12.06□□□□□ -0.48
TCOF1-201ENST00000323668 TMEM78Q5T7P6 136 aa12.06□□□□□ -0.48
TCOF1-201ENST00000323668 Q6AWC8 147 aa12.06□□□□□ -0.48
TCOF1-201ENST00000323668 TDGF1P3P51864 188 aa12.06□□□□□ -0.48
TCOF1-201ENST00000323668 LCN12Q6JVE5 192 aa12.06□□□□□ -0.48
TCOF1-201ENST00000323668 FAM169BQ8N8A8 192 aa12.06□□□□□ -0.48
TCOF1-201ENST00000323668 SCRT1Q9BWW7 348 aa12.06□□□□□ -0.48
TCOF1-201ENST00000323668 RABAC1Q9UI14 185 aa12.06□□□□□ -0.48
TCOF1-201ENST00000323668 MED13LQ71F56 2210 aa12.05□□□□□ -0.48
TCOF1-201ENST00000323668 ZNF788Q6ZQV5 615 aa12.05□□□□□ -0.48
TCOF1-201ENST00000323668 A0A1B0GW15 77 aa12.05□□□□□ -0.48
TCOF1-201ENST00000323668 J3KRW8 73 aa12.05□□□□□ -0.48
TCOF1-201ENST00000323668 CIARTQ8N365 385 aaPredicted RBP12.05□□□□□ -0.48
TCOF1-201ENST00000323668 LINC00479Q96M42 142 aa12.05□□□□□ -0.48
TCOF1-201ENST00000323668 PRELID3AQ96N28 172 aa12.05□□□□□ -0.48
TCOF1-201ENST00000323668 GAFA1Q96PS6 74 aa12.05□□□□□ -0.48
TCOF1-201ENST00000323668 YLPM1P49750 1951 aaKnown RBP12.05□□□□□ -0.48
TCOF1-201ENST00000323668 TMEM249Q2WGJ8 235 aa12.05□□□□□ -0.48
TCOF1-201ENST00000323668 MRPL52Q86TS9 123 aaKnown RBP12.05□□□□□ -0.48
TCOF1-201ENST00000323668 NUP35Q8NFH5 326 aa12.05□□□□□ -0.48
TCOF1-201ENST00000323668 S4R3C0 116 aa12.05□□□□□ -0.48
TCOF1-201ENST00000323668 F5H697 171 aa12.04□□□□□ -0.48
TCOF1-201ENST00000323668 IGHV3-35A0A0C4DH35 117 aa12.04□□□□□ -0.48
TCOF1-201ENST00000323668 H0YJW9 148 aa12.04□□□□□ -0.48
TCOF1-201ENST00000323668 TMEM200BQ69YZ2 307 aa12.04□□□□□ -0.48
TCOF1-201ENST00000323668 MRPL27Q9P0M9 148 aaKnown RBP12.04□□□□□ -0.48
TCOF1-201ENST00000323668 MBD3L4A6NDZ8 208 aaPredicted RBP12.04□□□□□ -0.48
TCOF1-201ENST00000323668 MBD3L3A6NE82 208 aaPredicted RBP12.04□□□□□ -0.48
TCOF1-201ENST00000323668 MBD3L5A6NJ08 208 aaPredicted RBP12.04□□□□□ -0.48
TCOF1-201ENST00000323668 FAM106CPP0CH98 169 aa12.04□□□□□ -0.48
TCOF1-201ENST00000323668 MBD3L2Q8NHZ7 208 aaPredicted RBP12.04□□□□□ -0.48
TCOF1-201ENST00000323668 C8orf46Q8TAG6 207 aa12.04□□□□□ -0.48
TCOF1-201ENST00000323668 PLCE1Q9P212 2302 aa12.04□□□□□ -0.48
TCOF1-201ENST00000323668 VWC2Q2TAL6 325 aa12.04□□□□□ -0.48
TCOF1-201ENST00000323668 NEUROG1Q92886 237 aa12.04□□□□□ -0.48
TCOF1-201ENST00000323668 PEF1Q9UBV8 284 aaKnown RBP12.04□□□□□ -0.48
TCOF1-201ENST00000323668 UNQ5815/PRO19632Q6UWF5 114 aa12.03□□□□□ -0.48
TCOF1-201ENST00000323668 Q6ZPA2 131 aa12.03□□□□□ -0.48
TCOF1-201ENST00000323668 ZNF414Q96IQ9 312 aa12.03□□□□□ -0.48
TCOF1-201ENST00000323668 TMEM208Q9BTX3 173 aa12.03□□□□□ -0.48
TCOF1-201ENST00000323668 SNAI2O43623 268 aa12.03□□□□□ -0.48
TCOF1-201ENST00000323668 RAB37Q96AX2 223 aa12.03□□□□□ -0.48
TCOF1-201ENST00000323668 CHCHD1Q96BP2 118 aaKnown RBP12.03□□□□□ -0.48
TCOF1-201ENST00000323668 PRB3Q04118 309 aaPredicted RBP12.03□□□□□ -0.48
TCOF1-201ENST00000323668 LHFPL4Q7Z7J7 247 aa12.03□□□□□ -0.48
TCOF1-201ENST00000323668 FAM181BA6NEQ2 426 aa12.03□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 48.4 ms