RNA–Protein interactions for RNA: ENST00000297405.9

CSMD3-201, Transcript of CUB and Sushi multiple domains 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSMD3, Length 13,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-201ENST00000297405 AURKAIP1Q9NWT8 199 aaPredicted RBP4.1□□□□□ -1.75
CSMD3-201ENST00000297405 LIPT2A6NK58 231 aa4.1□□□□□ -1.75
CSMD3-201ENST00000297405 UPK3AO75631 287 aa4.1□□□□□ -1.75
CSMD3-201ENST00000297405 MRPL43Q8N983 215 aaKnown RBP4.1□□□□□ -1.75
CSMD3-201ENST00000297405 TMEM141Q96I45 108 aa4.1□□□□□ -1.75
CSMD3-201ENST00000297405 JPT2Q9H910 190 aa4.1□□□□□ -1.75
CSMD3-201ENST00000297405 TBC1D29Q9UFV1 150 aa4.1□□□□□ -1.75
CSMD3-201ENST00000297405 CMC4P56277 68 aaPredicted RBP4.1□□□□□ -1.75
CSMD3-201ENST00000297405 PITX1P78337 314 aaPredicted RBP4.1□□□□□ -1.75
CSMD3-201ENST00000297405 NUP35Q8NFH5 326 aa4.1□□□□□ -1.75
CSMD3-201ENST00000297405 VN1R2Q8NFZ6 395 aa4.1□□□□□ -1.75
CSMD3-201ENST00000297405 SARGQ9BW04 601 aa4.1□□□□□ -1.75
CSMD3-201ENST00000297405 PRSS21Q9Y6M0 314 aa4.1□□□□□ -1.75
CSMD3-201ENST00000297405 CCL7P80098 99 aa4.1□□□□□ -1.75
CSMD3-201ENST00000297405 BVES-AS1Q5T3Y7 98 aa4.1□□□□□ -1.75
CSMD3-201ENST00000297405 TRAV17A0A0B4J275 112 aa4.1□□□□□ -1.75
CSMD3-201ENST00000297405 PDLIM4P50479 330 aa4.1□□□□□ -1.75
CSMD3-201ENST00000297405 PVRIGQ6DKI7 326 aa4.1□□□□□ -1.75
CSMD3-201ENST00000297405 NRTNQ99748 197 aa4.1□□□□□ -1.75
CSMD3-201ENST00000297405 CCL28Q9NRJ3 127 aa4.1□□□□□ -1.75
CSMD3-201ENST00000297405 C10orf105Q8TEF2 133 aa4.1□□□□□ -1.75
CSMD3-201ENST00000297405 INSM2Q96T92 566 aaPredicted RBP4.1□□□□□ -1.75
CSMD3-201ENST00000297405 SNHG12Q9BXW3 62 aa4.1□□□□□ -1.75
CSMD3-201ENST00000297405 VCYO14598 125 aa4.1□□□□□ -1.75
CSMD3-201ENST00000297405 ZNF32P17041 273 aa4.1□□□□□ -1.75
CSMD3-201ENST00000297405 GNG5P63218 68 aa4.1□□□□□ -1.75
CSMD3-201ENST00000297405 TNXAQ16473 311 aa4.1□□□□□ -1.75
CSMD3-201ENST00000297405 BRK1Q8WUW1 75 aa4.1□□□□□ -1.75
CSMD3-201ENST00000297405 RTBDNQ9BSG5 229 aaPredicted RBP4.1□□□□□ -1.75
CSMD3-201ENST00000297405 PEMTQ9UBM1 199 aa4.1□□□□□ -1.75
CSMD3-201ENST00000297405 MIC13Q5XKP0 118 aa4.09□□□□□ -1.75
CSMD3-201ENST00000297405 RNF125Q96EQ8 232 aa4.09□□□□□ -1.75
CSMD3-201ENST00000297405 SPRY1O43609 319 aaPredicted RBP4.09□□□□□ -1.75
CSMD3-201ENST00000297405 TIAF1O95411 115 aa4.09□□□□□ -1.75
CSMD3-201ENST00000297405 SNRPCP09234 159 aaKnown RBP4.09□□□□□ -1.75
CSMD3-201ENST00000297405 C6orf106Q9H6K1 298 aaPredicted RBP4.09□□□□□ -1.75
CSMD3-201ENST00000297405 REG4Q9BYZ8 158 aa4.09□□□□□ -1.75
CSMD3-201ENST00000297405 CCL27Q9Y4X3 112 aa4.09□□□□□ -1.75
CSMD3-201ENST00000297405 IGHV4-39P01824 125 aa4.09□□□□□ -1.75
CSMD3-201ENST00000297405 SLC25A16P16260 332 aa4.09□□□□□ -1.75
CSMD3-201ENST00000297405 ADMP35318 185 aa4.09□□□□□ -1.75
CSMD3-201ENST00000297405 UBE2BP63146 152 aa4.09□□□□□ -1.75
CSMD3-201ENST00000297405 DTX4Q9Y2E6 619 aa4.09□□□□□ -1.75
CSMD3-201ENST00000297405 CLDN2P57739 230 aa4.09□□□□□ -1.75
CSMD3-201ENST00000297405 LINC00305Q7Z4B0 112 aa4.09□□□□□ -1.75
CSMD3-201ENST00000297405 GATD1Q8NB37 220 aa4.09□□□□□ -1.75
CSMD3-201ENST00000297405 F8WEM9 126 aa4.09□□□□□ -1.75
CSMD3-201ENST00000297405 DXOO77932 396 aaKnown RBP4.09□□□□□ -1.75
CSMD3-201ENST00000297405 PYYP10082 97 aa4.09□□□□□ -1.75
CSMD3-201ENST00000297405 FAM19A2Q8N3H0 131 aa4.09□□□□□ -1.75
CSMD3-201ENST00000297405 HIGD1BQ9P298 99 aa4.09□□□□□ -1.75
CSMD3-201ENST00000297405 CD27P26842 260 aa4.09□□□□□ -1.75
CSMD3-201ENST00000297405 ZGLP1P0C6A0 271 aa4.09□□□□□ -1.76
CSMD3-201ENST00000297405 PRTN3P24158 256 aa4.09□□□□□ -1.76
CSMD3-201ENST00000297405 LGALS9BQ3B8N2 356 aa4.09□□□□□ -1.76
CSMD3-201ENST00000297405 LGALS9CQ6DKI2 356 aa4.09□□□□□ -1.76
CSMD3-201ENST00000297405 TCF19Q9Y242 345 aa4.09□□□□□ -1.76
CSMD3-201ENST00000297405 LAMTOR5O43504 91 aa4.09□□□□□ -1.76
CSMD3-201ENST00000297405 DEFB125Q8N687 156 aa4.09□□□□□ -1.76
CSMD3-201ENST00000297405 IQCF3P0C7M6 154 aa4.09□□□□□ -1.76
CSMD3-201ENST00000297405 IGLC2P0DOY2 106 aa4.09□□□□□ -1.76
CSMD3-201ENST00000297405 IGLC3P0DOY3 106 aa4.09□□□□□ -1.76
CSMD3-201ENST00000297405 CLLU1OSQ5K130 101 aa4.09□□□□□ -1.76
CSMD3-201ENST00000297405 ZNF793Q6ZN11 406 aa4.09□□□□□ -1.76
CSMD3-201ENST00000297405 PRR32B1ATL7 298 aa4.08□□□□□ -1.76
CSMD3-201ENST00000297405 METTL12A8MUP2 240 aa4.08□□□□□ -1.76
CSMD3-201ENST00000297405 FAM240AA0A1B0GVK7 77 aa4.08□□□□□ -1.76
CSMD3-201ENST00000297405 IGFBP4P22692 258 aa4.08□□□□□ -1.76
CSMD3-201ENST00000297405 ANKRD39Q53RE8 183 aa4.08□□□□□ -1.76
CSMD3-201ENST00000297405 EEF1AKMT3Q96AZ1 226 aa4.08□□□□□ -1.76
CSMD3-201ENST00000297405 NDUFA3O95167 84 aa4.08□□□□□ -1.76
CSMD3-201ENST00000297405 DEFB110Q30KQ9 67 aa4.08□□□□□ -1.76
CSMD3-201ENST00000297405 PCSK4Q6UW60 755 aa4.08□□□□□ -1.76
CSMD3-201ENST00000297405 FAM89BQ8N5H3 189 aa4.08□□□□□ -1.76
CSMD3-201ENST00000297405 PTH2Q96A98 100 aa4.08□□□□□ -1.76
CSMD3-201ENST00000297405 TSSC4Q9Y5U2 329 aaPredicted RBP4.08□□□□□ -1.76
CSMD3-201ENST00000297405 TMEM14DPA8MWL7 114 aa4.08□□□□□ -1.76
CSMD3-201ENST00000297405 C9JAW5 83 aa4.08□□□□□ -1.76
CSMD3-201ENST00000297405 PGLYRP1O75594 196 aaPredicted RBP4.08□□□□□ -1.76
CSMD3-201ENST00000297405 MPV17P39210 176 aa4.08□□□□□ -1.76
CSMD3-201ENST00000297405 NPPCP23582 126 aa4.08□□□□□ -1.76
CSMD3-201ENST00000297405 FOXI2Q6ZQN5 318 aa4.08□□□□□ -1.76
CSMD3-201ENST00000297405 SF3B6Q9Y3B4 125 aaKnown RBP4.08□□□□□ -1.76
CSMD3-201ENST00000297405 A0A1W2PPE3 182 aa4.08□□□□□ -1.76
CSMD3-201ENST00000297405 A0A1W2PPV9 198 aa4.08□□□□□ -1.76
CSMD3-201ENST00000297405 B5MCH6 92 aa4.08□□□□□ -1.76
CSMD3-201ENST00000297405 NHSL1Q5SYE7 1610 aa4.08□□□□□ -1.76
CSMD3-201ENST00000297405 PRSS47A8MTI9 375 aa4.08□□□□□ -1.76
CSMD3-201ENST00000297405 ZIC3O60481 467 aa4.08□□□□□ -1.76
CSMD3-201ENST00000297405 IL6RP08887 468 aaPredicted RBP4.08□□□□□ -1.76
CSMD3-201ENST00000297405 CRYBA4P53673 196 aa4.08□□□□□ -1.76
CSMD3-201ENST00000297405 RNF7Q9UBF6 113 aa4.08□□□□□ -1.76
CSMD3-201ENST00000297405 A0A1W2PQF6 199 aa4.08□□□□□ -1.76
CSMD3-201ENST00000297405 F6UB75 175 aa4.08□□□□□ -1.76
CSMD3-201ENST00000297405 NPYP01303 97 aa4.08□□□□□ -1.76
CSMD3-201ENST00000297405 TRMT61AQ96FX7 289 aaKnown RBP4.08□□□□□ -1.76
CSMD3-201ENST00000297405 DEFB118Q96PH6 123 aa4.08□□□□□ -1.76
CSMD3-201ENST00000297405 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa4.08□□□□□ -1.76
CSMD3-201ENST00000297405 TRAV13-1A0A0B4J241 112 aa4.08□□□□□ -1.76
CSMD3-201ENST00000297405 GFRA3O60609 400 aa4.08□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 60 ms