RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 NTF3P20783 257 aa11.06□□□□□ -0.64
LDLR-201ENST00000252444 CRYBB3P26998 211 aa11.06□□□□□ -0.64
LDLR-201ENST00000252444 LOXL1Q08397 574 aaPredicted RBP11.06□□□□□ -0.64
LDLR-201ENST00000252444 C15orf32Q32M92 178 aa11.06□□□□□ -0.64
LDLR-201ENST00000252444 GOLT1AQ6ZVE7 132 aa11.06□□□□□ -0.64
LDLR-201ENST00000252444 ZNF114Q8NC26 417 aa11.06□□□□□ -0.64
LDLR-201ENST00000252444 LINC00477Q96M19 166 aa11.06□□□□□ -0.64
LDLR-201ENST00000252444 AREGP15514 252 aa11.06□□□□□ -0.64
LDLR-201ENST00000252444 TWIST1Q15672 202 aa11.06□□□□□ -0.64
LDLR-201ENST00000252444 HOXB4P17483 251 aaPredicted RBP11.06□□□□□ -0.64
LDLR-201ENST00000252444 UQCRFS1P47985 274 aa11.06□□□□□ -0.64
LDLR-201ENST00000252444 FAM53AQ6NSI3 398 aaPredicted RBP11.06□□□□□ -0.64
LDLR-201ENST00000252444 IGFBPL1Q8WX77 278 aa11.06□□□□□ -0.64
LDLR-201ENST00000252444 EPDR1Q9UM22 224 aa11.06□□□□□ -0.64
LDLR-201ENST00000252444 INS-IGF2F8WCM5 200 aa11.05□□□□□ -0.64
LDLR-201ENST00000252444 CENPWQ5EE01 88 aa11.05□□□□□ -0.64
LDLR-201ENST00000252444 TTC9CQ8N5M4 171 aa11.05□□□□□ -0.64
LDLR-201ENST00000252444 RPP21Q9H633 154 aaKnown RBP11.05□□□□□ -0.64
LDLR-201ENST00000252444 SRP19P09132 144 aaKnown RBP11.05□□□□□ -0.64
LDLR-201ENST00000252444 ELOBQ15370 118 aa11.05□□□□□ -0.64
LDLR-201ENST00000252444 RASL11AQ6T310 242 aa11.05□□□□□ -0.64
LDLR-201ENST00000252444 BIVMQ86UB2 503 aa11.05□□□□□ -0.64
LDLR-201ENST00000252444 FAM24BQ8N5W8 94 aa11.05□□□□□ -0.64
LDLR-201ENST00000252444 IL36BQ9NZH7 164 aa11.05□□□□□ -0.64
LDLR-201ENST00000252444 FABP5P3A8MUU1 101 aa11.05□□□□□ -0.64
LDLR-201ENST00000252444 SNURFLB1AK76 121 aa11.05□□□□□ -0.64
LDLR-201ENST00000252444 LINC00574Q9H8X3 128 aa11.05□□□□□ -0.64
LDLR-201ENST00000252444 F2Z2F3 143 aa11.05□□□□□ -0.64
LDLR-201ENST00000252444 SOD3P08294 240 aa11.05□□□□□ -0.64
LDLR-201ENST00000252444 OR5AL1P0C617 328 aa11.05□□□□□ -0.64
LDLR-201ENST00000252444 HBBP68871 147 aa11.05□□□□□ -0.64
LDLR-201ENST00000252444 NDUFA4O00483 81 aa11.05□□□□□ -0.64
LDLR-201ENST00000252444 ZNF253O75346 499 aa11.05□□□□□ -0.64
LDLR-201ENST00000252444 ATP5L2Q7Z4Y8 100 aa11.05□□□□□ -0.64
LDLR-201ENST00000252444 SDK2Q58EX2 2172 aa11.04□□□□□ -0.64
LDLR-201ENST00000252444 TCF21O43680 179 aa11.04□□□□□ -0.64
LDLR-201ENST00000252444 MIR17HGQ75NE6 70 aa11.04□□□□□ -0.64
LDLR-201ENST00000252444 STHQ8IWL8 128 aa11.04□□□□□ -0.64
LDLR-201ENST00000252444 AGMATQ9BSE5 352 aa11.04□□□□□ -0.64
LDLR-201ENST00000252444 TMEM242Q9NWH2 141 aa11.04□□□□□ -0.64
LDLR-201ENST00000252444 VPREB3Q9UKI3 123 aa11.04□□□□□ -0.64
LDLR-201ENST00000252444 FER1L5A0AVI2 2057 aa11.04□□□□□ -0.64
LDLR-201ENST00000252444 H0YIZ8 118 aa11.04□□□□□ -0.64
LDLR-201ENST00000252444 MGPP08493 103 aa11.04□□□□□ -0.64
LDLR-201ENST00000252444 CAMPP49913 170 aa11.04□□□□□ -0.64
LDLR-201ENST00000252444 TMEM183BQ1AE95 376 aa11.04□□□□□ -0.64
LDLR-201ENST00000252444 LYRM7Q5U5X0 104 aa11.04□□□□□ -0.64
LDLR-201ENST00000252444 DAZ1Q9NQZ3 744 aaKnown RBP11.04□□□□□ -0.64
LDLR-201ENST00000252444 MFAP2P55001 183 aa11.04□□□□□ -0.64
LDLR-201ENST00000252444 RPL15P61313 204 aaKnown RBP11.04□□□□□ -0.64
LDLR-201ENST00000252444 C2CD4CQ8TF44 421 aa11.04□□□□□ -0.64
LDLR-201ENST00000252444 HEATR5AQ86XA9 2040 aa11.03□□□□□ -0.64
LDLR-201ENST00000252444 C15orf62A8K5M9 175 aa11.03□□□□□ -0.64
LDLR-201ENST00000252444 TMEM14CQ9P0S9 112 aa11.03□□□□□ -0.64
LDLR-201ENST00000252444 CD300CQ08708 224 aa11.03□□□□□ -0.64
LDLR-201ENST00000252444 LHFPL5Q8TAF8 219 aa11.03□□□□□ -0.64
LDLR-201ENST00000252444 RFNGQ9Y644 331 aa11.03□□□□□ -0.64
LDLR-201ENST00000252444 LINC01619G3V211 115 aa11.03□□□□□ -0.64
LDLR-201ENST00000252444 PPBPP02775 128 aa11.02□□□□□ -0.64
LDLR-201ENST00000252444 TFF1P04155 84 aa11.02□□□□□ -0.64
LDLR-201ENST00000252444 FOXE3Q13461 319 aa11.02□□□□□ -0.64
LDLR-201ENST00000252444 ARL6IP6Q8N6S5 226 aa11.02□□□□□ -0.64
LDLR-201ENST00000252444 THAP8Q8NA92 274 aa11.02□□□□□ -0.64
LDLR-201ENST00000252444 SLC25A39Q9BZJ4 359 aaPredicted RBP11.02□□□□□ -0.64
LDLR-201ENST00000252444 M0R2Z0 102 aa11.02□□□□□ -0.65
LDLR-201ENST00000252444 TFPI2P48307 235 aa11.02□□□□□ -0.65
LDLR-201ENST00000252444 TMEM88Q6PEY1 159 aa11.02□□□□□ -0.65
LDLR-201ENST00000252444 TMEM37Q8WXS4 190 aa11.02□□□□□ -0.65
LDLR-201ENST00000252444 SHANK2-AS3Q9BTD1 123 aa11.02□□□□□ -0.65
LDLR-201ENST00000252444 LCN12Q6JVE5 192 aa11.02□□□□□ -0.65
LDLR-201ENST00000252444 IER3P46695 156 aa11.01□□□□□ -0.65
LDLR-201ENST00000252444 IZUMO1RA6ND01 250 aa11.01□□□□□ -0.65
LDLR-201ENST00000252444 TMEM249Q2WGJ8 235 aa11.01□□□□□ -0.65
LDLR-201ENST00000252444 VAMP8Q9BV40 100 aa11.01□□□□□ -0.65
LDLR-201ENST00000252444 UBE2L6O14933 153 aa11.01□□□□□ -0.65
LDLR-201ENST00000252444 IGHV4-39P01824 125 aa11.01□□□□□ -0.65
LDLR-201ENST00000252444 Q5BKY6 102 aa11.01□□□□□ -0.65
LDLR-201ENST00000252444 RP1L1Q8IWN7 2480 aaPredicted RBP11□□□□□ -0.65
LDLR-201ENST00000252444 MGST2Q99735 147 aa11□□□□□ -0.65
LDLR-201ENST00000252444 SRD5A3Q9H8P0 318 aa11□□□□□ -0.65
LDLR-201ENST00000252444 CKS2P33552 79 aa11□□□□□ -0.65
LDLR-201ENST00000252444 DEFA6Q01524 100 aa11□□□□□ -0.65
LDLR-201ENST00000252444 RNF144BQ7Z419 303 aa11□□□□□ -0.65
LDLR-201ENST00000252444 PIP4P2Q8N4L2 257 aa11□□□□□ -0.65
LDLR-201ENST00000252444 IGKV3-7A0A075B6H7 116 aa11□□□□□ -0.65
LDLR-201ENST00000252444 C1QL1O75973 258 aa11□□□□□ -0.65
LDLR-201ENST00000252444 MRPL54Q6P161 138 aaKnown RBP11□□□□□ -0.65
LDLR-201ENST00000252444 MRPL53Q96EL3 112 aaKnown RBP11□□□□□ -0.65
LDLR-201ENST00000252444 PSG1P11464 419 aa11□□□□□ -0.65
LDLR-201ENST00000252444 HS3ST6Q96QI5 342 aa11□□□□□ -0.65
LDLR-201ENST00000252444 KIR2DL4Q99706 377 aa11□□□□□ -0.65
LDLR-201ENST00000252444 CYTL1Q9NRR1 136 aa11□□□□□ -0.65
LDLR-201ENST00000252444 A0A1W2PPI3 338 aa10.99□□□□□ -0.65
LDLR-201ENST00000252444 PCNX2A6NKB5 2137 aa10.99□□□□□ -0.65
LDLR-201ENST00000252444 A0A1B0GUT8 65 aa10.99□□□□□ -0.65
LDLR-201ENST00000252444 FAM103A1Q9BTL3 118 aaKnown RBP10.99□□□□□ -0.65
LDLR-201ENST00000252444 ZNF705AQ6ZN79 300 aaPredicted RBP10.99□□□□□ -0.65
LDLR-201ENST00000252444 C1QL4Q86Z23 238 aa10.99□□□□□ -0.65
LDLR-201ENST00000252444 GSX1Q9H4S2 264 aaPredicted RBP10.99□□□□□ -0.65
LDLR-201ENST00000252444 PSG8Q9UQ74 426 aa10.99□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 61.7 ms