RNA–Protein interactions for RNA: ENST00000599575.5

SHKBP1-219, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 810 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-219ENST00000599575 Q56UQ5 140 aa12.72□□□□□ -0.37
SHKBP1-219ENST00000599575 C1QL4Q86Z23 238 aa12.72□□□□□ -0.37
SHKBP1-219ENST00000599575 TMEM116Q8NCL8 245 aa12.72□□□□□ -0.37
SHKBP1-219ENST00000599575 OR4X1Q8NH49 305 aa12.72□□□□□ -0.37
SHKBP1-219ENST00000599575 TMEM170AQ8WVE7 144 aa12.72□□□□□ -0.37
SHKBP1-219ENST00000599575 ZMAT5Q9UDW3 170 aaKnown RBP12.72□□□□□ -0.37
SHKBP1-219ENST00000599575 C15orf62A8K5M9 175 aa12.71□□□□□ -0.37
SHKBP1-219ENST00000599575 SSSCA1O60232 199 aa12.71□□□□□ -0.37
SHKBP1-219ENST00000599575 GNG7O60262 68 aa12.71□□□□□ -0.37
SHKBP1-219ENST00000599575 SCGB1D2O95969 90 aa12.71□□□□□ -0.37
SHKBP1-219ENST00000599575 TRBV12-3P01733 135 aa12.71□□□□□ -0.37
SHKBP1-219ENST00000599575 RLN2P04090 185 aa12.71□□□□□ -0.37
SHKBP1-219ENST00000599575 GPR183P32249 361 aa12.71□□□□□ -0.37
SHKBP1-219ENST00000599575 RELQ04864 619 aaPredicted RBP12.71□□□□□ -0.37
SHKBP1-219ENST00000599575 CD69Q07108 199 aa12.71□□□□□ -0.37
SHKBP1-219ENST00000599575 ACSM6Q6P461 480 aa12.71□□□□□ -0.37
SHKBP1-219ENST00000599575 DCUN1D4Q92564 292 aa12.71□□□□□ -0.37
SHKBP1-219ENST00000599575 DLX4Q92988 240 aaPredicted RBP12.71□□□□□ -0.37
SHKBP1-219ENST00000599575 ELOVL1Q9BW60 279 aa12.71□□□□□ -0.37
SHKBP1-219ENST00000599575 PSENENQ9NZ42 101 aa12.71□□□□□ -0.37
SHKBP1-219ENST00000599575 PEMTQ9UBM1 199 aa12.71□□□□□ -0.37
SHKBP1-219ENST00000599575 RCL1Q9Y2P8 373 aaKnown RBP12.71□□□□□ -0.37
SHKBP1-219ENST00000599575 F8W735 103 aaPredicted RBP12.7□□□□□ -0.38
SHKBP1-219ENST00000599575 L7N2F9 121 aa12.7□□□□□ -0.38
SHKBP1-219ENST00000599575 WIPF1O43516 503 aa12.7□□□□□ -0.38
SHKBP1-219ENST00000599575 CLN5O75503 358 aa12.7□□□□□ -0.38
SHKBP1-219ENST00000599575 CTSGP08311 255 aa12.7□□□□□ -0.38
SHKBP1-219ENST00000599575 PET100P0DJ07 73 aa12.7□□□□□ -0.38
SHKBP1-219ENST00000599575 SLURP1P55000 103 aa12.7□□□□□ -0.38
SHKBP1-219ENST00000599575 VAMP2P63027 116 aa12.7□□□□□ -0.38
SHKBP1-219ENST00000599575 SPANXN5Q5MJ07 72 aa12.7□□□□□ -0.38
SHKBP1-219ENST00000599575 REC114Q7Z4M0 266 aa12.7□□□□□ -0.38
SHKBP1-219ENST00000599575 MED28Q9H204 178 aa12.7□□□□□ -0.38
SHKBP1-219ENST00000599575 FNDC4Q9H6D8 234 aaPredicted RBP12.7□□□□□ -0.38
SHKBP1-219ENST00000599575 SIGLEC8Q9NYZ4 499 aa12.7□□□□□ -0.38
SHKBP1-219ENST00000599575 MGAT4CQ9UBM8 478 aa12.7□□□□□ -0.38
SHKBP1-219ENST00000599575 OR2T8A6NH00 312 aa12.69□□□□□ -0.38
SHKBP1-219ENST00000599575 PPP5D1E7EU14 171 aa12.69□□□□□ -0.38
SHKBP1-219ENST00000599575 K7EPK0 472 aa12.69□□□□□ -0.38
SHKBP1-219ENST00000599575 IGHV3-23P01764 117 aa12.69□□□□□ -0.38
SHKBP1-219ENST00000599575 ELLP55199 621 aaPredicted RBP12.69□□□□□ -0.38
SHKBP1-219ENST00000599575 H2BFSP57053 126 aa12.69□□□□□ -0.38
SHKBP1-219ENST00000599575 C9orf66Q5T8R8 295 aa12.69□□□□□ -0.38
SHKBP1-219ENST00000599575 PRSS54Q6PEW0 395 aa12.69□□□□□ -0.38
SHKBP1-219ENST00000599575 TMEM14EPQ6UXP3 125 aa12.69□□□□□ -0.38
SHKBP1-219ENST00000599575 UBAC2Q8NBM4 344 aa12.69□□□□□ -0.38
SHKBP1-219ENST00000599575 OR9G4Q8NGQ1 327 aa12.69□□□□□ -0.38
SHKBP1-219ENST00000599575 ZNF436Q9C0F3 470 aaPredicted RBP12.69□□□□□ -0.38
SHKBP1-219ENST00000599575 S4R3C0 116 aa12.69□□□□□ -0.38
SHKBP1-219ENST00000599575 NBEAL1Q6ZS30 2694 aa12.68□□□□□ -0.38
SHKBP1-219ENST00000599575 A8MWP6 167 aa12.68□□□□□ -0.38
SHKBP1-219ENST00000599575 FNDC10F2Z333 226 aa12.68□□□□□ -0.38
SHKBP1-219ENST00000599575 NDUFA4O00483 81 aa12.68□□□□□ -0.38
SHKBP1-219ENST00000599575 OR2C1O95371 312 aa12.68□□□□□ -0.38
SHKBP1-219ENST00000599575 TMEM50AO95807 157 aa12.68□□□□□ -0.38
SHKBP1-219ENST00000599575 PAX9P55771 341 aa12.68□□□□□ -0.38
SHKBP1-219ENST00000599575 SLC16A13Q7RTY0 426 aa12.68□□□□□ -0.38
SHKBP1-219ENST00000599575 GGACTQ9BVM4 153 aa12.68□□□□□ -0.38
SHKBP1-219ENST00000599575 LSM5Q9Y4Y9 91 aaKnown RBP12.68□□□□□ -0.38
SHKBP1-219ENST00000599575 IGHV3-21A0A0B4J1V1 117 aa12.67□□□□□ -0.38
SHKBP1-219ENST00000599575 SEC14L6B5MCN3 397 aa12.67□□□□□ -0.38
SHKBP1-219ENST00000599575 ADMP35318 185 aa12.67□□□□□ -0.38
SHKBP1-219ENST00000599575 SYNJ2BPP57105 145 aa12.67□□□□□ -0.38
SHKBP1-219ENST00000599575 S100A10P60903 97 aa12.67□□□□□ -0.38
SHKBP1-219ENST00000599575 RAB32Q13637 225 aa12.67□□□□□ -0.38
SHKBP1-219ENST00000599575 OR1S2Q8NGQ3 325 aa12.67□□□□□ -0.38
SHKBP1-219ENST00000599575 MARC2Q969Z3 335 aa12.67□□□□□ -0.38
SHKBP1-219ENST00000599575 SLC35E1Q96K37 410 aa12.67□□□□□ -0.38
SHKBP1-219ENST00000599575 OR4C12Q96R67 309 aa12.67□□□□□ -0.38
SHKBP1-219ENST00000599575 UFC1Q9Y3C8 167 aa12.67□□□□□ -0.38
SHKBP1-219ENST00000599575 PRSS46E5RG02 174 aa12.66□□□□□ -0.38
SHKBP1-219ENST00000599575 E5RGE8 158 aa12.66□□□□□ -0.38
SHKBP1-219ENST00000599575 H3BP45 60 aa12.66□□□□□ -0.38
SHKBP1-219ENST00000599575 DEDDO75618 318 aa12.66□□□□□ -0.38
SHKBP1-219ENST00000599575 SIX6O95475 246 aa12.66□□□□□ -0.38
SHKBP1-219ENST00000599575 FABP1P07148 127 aa12.66□□□□□ -0.38
SHKBP1-219ENST00000599575 RND2P52198 227 aa12.66□□□□□ -0.38
SHKBP1-219ENST00000599575 RRAS2P62070 204 aaPredicted RBP12.66□□□□□ -0.38
SHKBP1-219ENST00000599575 SAMD5Q5TGI4 173 aa12.66□□□□□ -0.38
SHKBP1-219ENST00000599575 ZNF600Q6ZNG1 722 aa12.66□□□□□ -0.38
SHKBP1-219ENST00000599575 OR10P1Q8NGE3 313 aa12.66□□□□□ -0.38
SHKBP1-219ENST00000599575 CHRDL1Q9BU40 450 aa12.66□□□□□ -0.38
SHKBP1-219ENST00000599575 C11orf1Q9H5F2 150 aa12.66□□□□□ -0.38
SHKBP1-219ENST00000599575 LYRM2Q9NU23 88 aaPredicted RBP12.66□□□□□ -0.38
SHKBP1-219ENST00000599575 PAIP2BQ9ULR5 123 aaKnown RBP12.66□□□□□ -0.38
SHKBP1-219ENST00000599575 K7EMT4 169 aa12.65□□□□□ -0.38
SHKBP1-219ENST00000599575 CAV2P51636 162 aa12.65□□□□□ -0.38
SHKBP1-219ENST00000599575 YPEL3P61236 119 aaPredicted RBP12.65□□□□□ -0.38
SHKBP1-219ENST00000599575 GAMTQ14353 236 aa12.65□□□□□ -0.38
SHKBP1-219ENST00000599575 MLANAQ16655 118 aa12.65□□□□□ -0.38
SHKBP1-219ENST00000599575 C11orf87Q6NUJ2 197 aa12.65□□□□□ -0.38
SHKBP1-219ENST00000599575 PPP1R1CQ8WVI7 109 aa12.65□□□□□ -0.38
SHKBP1-219ENST00000599575 TMEM190Q8WZ59 177 aa12.65□□□□□ -0.38
SHKBP1-219ENST00000599575 ZNF320A2RRD8 509 aa12.64□□□□□ -0.39
SHKBP1-219ENST00000599575 IGHV3-48P01763 117 aa12.64□□□□□ -0.39
SHKBP1-219ENST00000599575 IGLC1P0CG04 106 aa12.64□□□□□ -0.39
SHKBP1-219ENST00000599575 IGLL1P15814 213 aa12.64□□□□□ -0.39
SHKBP1-219ENST00000599575 OR10J1P30954 320 aa12.64□□□□□ -0.39
SHKBP1-219ENST00000599575 P2RY1P47900 373 aa12.64□□□□□ -0.39
SHKBP1-219ENST00000599575 DLK1P80370 383 aa12.64□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 54 ms