RNA–Protein interactions for RNA: ENST00000597968.1

TRIM28-211, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 504 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-211ENST00000597968 C11orf45Q8TAV5 145 aa9.99□□□□□ -0.81
TRIM28-211ENST00000597968 RRNAD1Q96FB5 475 aaKnown RBP9.99□□□□□ -0.81
TRIM28-211ENST00000597968 NARS2Q96I59 477 aaKnown RBP9.99□□□□□ -0.81
TRIM28-211ENST00000597968 MS4A6AQ9H2W1 248 aa9.99□□□□□ -0.81
TRIM28-211ENST00000597968 HRH4Q9H3N8 390 aa9.99□□□□□ -0.81
TRIM28-211ENST00000597968 ENY2Q9NPA8 101 aa9.99□□□□□ -0.81
TRIM28-211ENST00000597968 COPZ2Q9P299 210 aa9.99□□□□□ -0.81
TRIM28-211ENST00000597968 PUS1Q9Y606 427 aaKnown RBP eCLIP9.99□□□□□ -0.81
TRIM28-211ENST00000597968 RPS10-NUDT3A0A1W2PQS6 291 aa9.98□□□□□ -0.81
TRIM28-211ENST00000597968 C11orf94C9JXX5 98 aa9.98□□□□□ -0.81
TRIM28-211ENST00000597968 CLN5O75503 358 aa9.98□□□□□ -0.81
TRIM28-211ENST00000597968 IGKV1-5P01602 117 aa9.98□□□□□ -0.81
TRIM28-211ENST00000597968 IGHV3-48P01763 117 aa9.98□□□□□ -0.81
TRIM28-211ENST00000597968 UCP1P25874 307 aa9.98□□□□□ -0.81
TRIM28-211ENST00000597968 CRYBB3P26998 211 aa9.98□□□□□ -0.81
TRIM28-211ENST00000597968 EIF2B2P49770 351 aaKnown RBP9.98□□□□□ -0.81
TRIM28-211ENST00000597968 MRPS10P82664 201 aaKnown RBP9.98□□□□□ -0.81
TRIM28-211ENST00000597968 BSXQ3C1V8 233 aa9.98□□□□□ -0.81
TRIM28-211ENST00000597968 MORN3Q6PF18 240 aaPredicted RBP9.98□□□□□ -0.81
TRIM28-211ENST00000597968 GPR141Q7Z602 305 aa9.98□□□□□ -0.81
TRIM28-211ENST00000597968 OR11H2Q8NH07 326 aa9.98□□□□□ -0.81
TRIM28-211ENST00000597968 ST8SIA2Q92186 375 aa9.98□□□□□ -0.81
TRIM28-211ENST00000597968 METTL26Q96S19 204 aa9.98□□□□□ -0.81
TRIM28-211ENST00000597968 TP53RKQ96S44 253 aa9.98□□□□□ -0.81
TRIM28-211ENST00000597968 MRPS26Q9BYN8 205 aaKnown RBP9.98□□□□□ -0.81
TRIM28-211ENST00000597968 FRAS1Q86XX4 4008 aa9.98□□□□□ -0.81
TRIM28-211ENST00000597968 CA1P00915 261 aaPredicted RBP9.97□□□□□ -0.81
TRIM28-211ENST00000597968 CD74P04233 296 aa9.97□□□□□ -0.81
TRIM28-211ENST00000597968 RNASE2P10153 161 aaKnown RBP9.97□□□□□ -0.81
TRIM28-211ENST00000597968 SPP1P10451 314 aa9.97□□□□□ -0.81
TRIM28-211ENST00000597968 HTR2BP41595 481 aa9.97□□□□□ -0.81
TRIM28-211ENST00000597968 TFPI2P48307 235 aa9.97□□□□□ -0.81
TRIM28-211ENST00000597968 PPP5CP53041 499 aa9.97□□□□□ -0.81
TRIM28-211ENST00000597968 AP2S1P53680 142 aaPredicted RBP9.97□□□□□ -0.81
TRIM28-211ENST00000597968 TAS2R19P59542 299 aa9.97□□□□□ -0.81
TRIM28-211ENST00000597968 RBMS2Q15434 407 aaKnown RBP9.97□□□□□ -0.81
TRIM28-211ENST00000597968 SURF2Q15527 256 aaPredicted RBP9.97□□□□□ -0.81
TRIM28-211ENST00000597968 SP6Q3SY56 376 aa9.97□□□□□ -0.81
TRIM28-211ENST00000597968 STHQ8IWL8 128 aa9.97□□□□□ -0.81
TRIM28-211ENST00000597968 TMEM229BQ8NBD8 167 aa9.97□□□□□ -0.81
TRIM28-211ENST00000597968 RABL2AQ9UBK7 228 aaPredicted RBP9.97□□□□□ -0.81
TRIM28-211ENST00000597968 RABL2BQ9UNT1 228 aa9.97□□□□□ -0.81
TRIM28-211ENST00000597968 IGHV3-49A0A0A0MS15 119 aa9.96□□□□□ -0.82
TRIM28-211ENST00000597968 RGS5O15539 181 aa9.96□□□□□ -0.82
TRIM28-211ENST00000597968 CDS2O95674 445 aa9.96□□□□□ -0.82
TRIM28-211ENST00000597968 SLC25A4P12235 298 aa9.96□□□□□ -0.82
TRIM28-211ENST00000597968 OPRK1P41145 380 aa9.96□□□□□ -0.82
TRIM28-211ENST00000597968 HOXA1P49639 335 aaPredicted RBP9.96□□□□□ -0.82
TRIM28-211ENST00000597968 SPCS3P61009 180 aa9.96□□□□□ -0.82
TRIM28-211ENST00000597968 RPL11P62913 178 aaKnown RBP9.96□□□□□ -0.82
TRIM28-211ENST00000597968 TRIM16LQ309B1 348 aa9.96□□□□□ -0.82
TRIM28-211ENST00000597968 SCGB2B2Q4G0G5 96 aa9.96□□□□□ -0.82
TRIM28-211ENST00000597968 FAAP20Q6NZ36 180 aa9.96□□□□□ -0.82
TRIM28-211ENST00000597968 NOXA1Q86UR1 476 aa9.96□□□□□ -0.82
TRIM28-211ENST00000597968 CLVS1Q8IUQ0 354 aaPredicted RBP9.96□□□□□ -0.82
TRIM28-211ENST00000597968 GBGT1Q8N5D6 347 aa9.96□□□□□ -0.82
TRIM28-211ENST00000597968 C2CD4CQ8TF44 421 aa9.96□□□□□ -0.82
TRIM28-211ENST00000597968 SEPSECSQ9HD40 501 aaKnown RBP9.96□□□□□ -0.82
TRIM28-211ENST00000597968 CTNNBIP1Q9NSA3 81 aaPredicted RBP9.96□□□□□ -0.82
TRIM28-211ENST00000597968 IGKV3-7A0A075B6H7 116 aa9.95□□□□□ -0.82
TRIM28-211ENST00000597968 IGHV3OR16-13A0A075B7E8 117 aa9.95□□□□□ -0.82
TRIM28-211ENST00000597968 IGHV3-74A0A0B4J1X5 117 aa9.95□□□□□ -0.82
TRIM28-211ENST00000597968 A0A1B0GU03 582 aa9.95□□□□□ -0.82
TRIM28-211ENST00000597968 HELTA6NFD8 242 aa9.95□□□□□ -0.82
TRIM28-211ENST00000597968 GABARAPH6UMI1 98 aa9.95□□□□□ -0.82
TRIM28-211ENST00000597968 RAB3DO95716 219 aa9.95□□□□□ -0.82
TRIM28-211ENST00000597968 MIFP14174 115 aa9.95□□□□□ -0.82
TRIM28-211ENST00000597968 DEFB131AP59861 70 aa9.95□□□□□ -0.82
TRIM28-211ENST00000597968 DHODHQ02127 395 aa9.95□□□□□ -0.82
TRIM28-211ENST00000597968 MEF2DQ14814 521 aa9.95□□□□□ -0.82
TRIM28-211ENST00000597968 ZNF124Q15973 351 aa9.95□□□□□ -0.82
TRIM28-211ENST00000597968 OR13C8Q8NGS7 320 aa9.95□□□□□ -0.82
TRIM28-211ENST00000597968 MARCH1Q8TCQ1 289 aa9.95□□□□□ -0.82
TRIM28-211ENST00000597968 RNASEH2CQ8TDP1 164 aaKnown RBP9.95□□□□□ -0.82
TRIM28-211ENST00000597968 TMEM222Q9H0R3 208 aa9.95□□□□□ -0.82
TRIM28-211ENST00000597968 K7EQG2 157 aa9.94□□□□□ -0.82
TRIM28-211ENST00000597968 APOHP02749 345 aaPredicted RBP9.94□□□□□ -0.82
TRIM28-211ENST00000597968 ETV6P41212 452 aa9.94□□□□□ -0.82
TRIM28-211ENST00000597968 YPEL3P61236 119 aaPredicted RBP9.94□□□□□ -0.82
TRIM28-211ENST00000597968 C2orf83Q53S99 150 aa9.94□□□□□ -0.82
TRIM28-211ENST00000597968 ETFRF1Q6IPR1 90 aa9.94□□□□□ -0.82
TRIM28-211ENST00000597968 STEAP1BQ6NZ63 245 aa9.94□□□□□ -0.82
TRIM28-211ENST00000597968 TRPT1Q86TN4 253 aaKnown RBP9.94□□□□□ -0.82
TRIM28-211ENST00000597968 LILRB2Q8N423 598 aa9.94□□□□□ -0.82
TRIM28-211ENST00000597968 OR1S2Q8NGQ3 325 aa9.94□□□□□ -0.82
TRIM28-211ENST00000597968 RNASE11Q8TAA1 199 aaKnown RBP9.94□□□□□ -0.82
TRIM28-211ENST00000597968 RBPMSQ93062 196 aaKnown RBP9.94□□□□□ -0.82
TRIM28-211ENST00000597968 TMEM230Q96A57 120 aa9.94□□□□□ -0.82
TRIM28-211ENST00000597968 FNDC4Q9H6D8 234 aaPredicted RBP9.94□□□□□ -0.82
TRIM28-211ENST00000597968 PIGBOS1A0A0B4J2F0 54 aa9.93□□□□□ -0.82
TRIM28-211ENST00000597968 A0A0G2JRQ6 117 aa9.93□□□□□ -0.82
TRIM28-211ENST00000597968 ZNF705EA8MWA4 302 aaPredicted RBP9.93□□□□□ -0.82
TRIM28-211ENST00000597968 P2RY1P47900 373 aa9.93□□□□□ -0.82
TRIM28-211ENST00000597968 CENPSQ8N2Z9 138 aa9.93□□□□□ -0.82
TRIM28-211ENST00000597968 DCANP1Q8TF63 244 aa9.93□□□□□ -0.82
TRIM28-211ENST00000597968 Q8WTZ3 238 aa9.93□□□□□ -0.82
TRIM28-211ENST00000597968 RTBDNQ9BSG5 229 aaPredicted RBP9.93□□□□□ -0.82
TRIM28-211ENST00000597968 RABAC1Q9UI14 185 aa9.93□□□□□ -0.82
TRIM28-211ENST00000597968 C14orf166Q9Y224 244 aaKnown RBP9.93□□□□□ -0.82
TRIM28-211ENST00000597968 U3KQE9 123 aa9.93□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 49.9 ms