RNA–Protein interactions for RNA: ENST00000593764.5

SHKBP1-202, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 870 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-202ENST00000593764 SULT1A3P0DMM9 295 aa13.83□□□□□ -0.2
SHKBP1-202ENST00000593764 SULT1A4P0DMN0 295 aa13.83□□□□□ -0.2
SHKBP1-202ENST00000593764 NPBWR1P48145 328 aa13.83□□□□□ -0.2
SHKBP1-202ENST00000593764 TMEM128Q5BJH2 165 aa13.83□□□□□ -0.2
SHKBP1-202ENST00000593764 RBPMS2Q6ZRY4 209 aaKnown RBP13.83□□□□□ -0.2
SHKBP1-202ENST00000593764 TMED4Q7Z7H5 227 aa13.83□□□□□ -0.2
SHKBP1-202ENST00000593764 LGI3Q8N145 548 aa13.83□□□□□ -0.2
SHKBP1-202ENST00000593764 TMEM170AQ8WVE7 144 aa13.83□□□□□ -0.2
SHKBP1-202ENST00000593764 SMPXQ9UHP9 88 aa13.83□□□□□ -0.2
SHKBP1-202ENST00000593764 TSPAN4O14817 238 aa13.82□□□□□ -0.2
SHKBP1-202ENST00000593764 YIF1AO95070 293 aa13.82□□□□□ -0.2
SHKBP1-202ENST00000593764 NXPH3O95157 252 aa13.82□□□□□ -0.2
SHKBP1-202ENST00000593764 ANXA3P12429 323 aa13.82□□□□□ -0.2
SHKBP1-202ENST00000593764 HTR2BP41595 481 aa13.82□□□□□ -0.2
SHKBP1-202ENST00000593764 C2orf83Q53S99 150 aa13.82□□□□□ -0.2
SHKBP1-202ENST00000593764 SLC16A13Q7RTY0 426 aa13.82□□□□□ -0.2
SHKBP1-202ENST00000593764 OR52B4Q8NGK2 314 aa13.82□□□□□ -0.2
SHKBP1-202ENST00000593764 SRD5A3Q9H8P0 318 aa13.82□□□□□ -0.2
SHKBP1-202ENST00000593764 HEYLQ9NQ87 328 aaPredicted RBP13.82□□□□□ -0.2
SHKBP1-202ENST00000593764 NDUFA13Q9P0J0 144 aa13.82□□□□□ -0.2
SHKBP1-202ENST00000593764 KMT2CQ8NEZ4 4911 aaKnown RBP13.81□□□□□ -0.2
SHKBP1-202ENST00000593764 IGHV7-4-1A0A0J9YVY3 117 aa13.81□□□□□ -0.2
SHKBP1-202ENST00000593764 CEBPZOSA8MTT3 80 aa13.81□□□□□ -0.2
SHKBP1-202ENST00000593764 CHEK1O14757 476 aa13.81□□□□□ -0.2
SHKBP1-202ENST00000593764 OPRK1P41145 380 aa13.81□□□□□ -0.2
SHKBP1-202ENST00000593764 CCR6P51684 374 aa13.81□□□□□ -0.2
SHKBP1-202ENST00000593764 SRPXP78539 464 aa13.81□□□□□ -0.2
SHKBP1-202ENST00000593764 SMCO1Q147U7 214 aa13.81□□□□□ -0.2
SHKBP1-202ENST00000593764 ANKRD55Q3KP44 614 aa13.81□□□□□ -0.2
SHKBP1-202ENST00000593764 TOMM20LQ6UXN7 152 aa13.81□□□□□ -0.2
SHKBP1-202ENST00000593764 OR4X1Q8NH49 305 aa13.81□□□□□ -0.2
SHKBP1-202ENST00000593764 SPAG8Q99932 426 aaPredicted RBP13.81□□□□□ -0.2
SHKBP1-202ENST00000593764 HSPB7Q9UBY9 170 aa13.81□□□□□ -0.2
SHKBP1-202ENST00000593764 CACFD1Q9UGQ2 172 aa13.81□□□□□ -0.2
SHKBP1-202ENST00000593764 CLN5O75503 358 aa13.8□□□□□ -0.2
SHKBP1-202ENST00000593764 TNFRSF9Q07011 255 aa13.8□□□□□ -0.2
SHKBP1-202ENST00000593764 LRTM2Q8N967 370 aa13.8□□□□□ -0.2
SHKBP1-202ENST00000593764 RNF2Q99496 336 aa13.8□□□□□ -0.2
SHKBP1-202ENST00000593764 RHPN1-AS1Q9BWJ2 59 aa13.8□□□□□ -0.2
SHKBP1-202ENST00000593764 IGHV3-49A0A0A0MS15 119 aa13.79□□□□□ -0.2
SHKBP1-202ENST00000593764 TRAV14DV4A0A0A6YYC5 116 aa13.79□□□□□ -0.2
SHKBP1-202ENST00000593764 A0A1B0GU03 582 aa13.79□□□□□ -0.2
SHKBP1-202ENST00000593764 PPP1R1AQ13522 171 aa13.79□□□□□ -0.2
SHKBP1-202ENST00000593764 RBMS2Q15434 407 aaKnown RBP13.79□□□□□ -0.2
SHKBP1-202ENST00000593764 LAMTOR1Q6IAA8 161 aa13.79□□□□□ -0.2
SHKBP1-202ENST00000593764 ZNF600Q6ZNG1 722 aa13.79□□□□□ -0.2
SHKBP1-202ENST00000593764 TMEM116Q8NCL8 245 aa13.79□□□□□ -0.2
SHKBP1-202ENST00000593764 SLC24A4Q8NFF2 622 aa13.79□□□□□ -0.2
SHKBP1-202ENST00000593764 CITED4Q96RK1 184 aa13.79□□□□□ -0.2
SHKBP1-202ENST00000593764 SPATA25Q9BR10 227 aa13.79□□□□□ -0.2
SHKBP1-202ENST00000593764 ZFAND3Q9H8U3 227 aa13.79□□□□□ -0.2
SHKBP1-202ENST00000593764 PUS1Q9Y606 427 aaKnown RBP eCLIP13.79□□□□□ -0.2
SHKBP1-202ENST00000593764 DUXBA0A1W2PPF3 345 aa13.78□□□□□ -0.2
SHKBP1-202ENST00000593764 PITX3O75364 302 aa13.78□□□□□ -0.2
SHKBP1-202ENST00000593764 SFT2D2O95562 160 aa13.78□□□□□ -0.2
SHKBP1-202ENST00000593764 IGKV1-17P01599 117 aa13.78□□□□□ -0.2
SHKBP1-202ENST00000593764 VAMP1P23763 118 aa13.78□□□□□ -0.2
SHKBP1-202ENST00000593764 TRIQKQ629K1 86 aa13.78□□□□□ -0.2
SHKBP1-202ENST00000593764 FAM90A2PQ658T7 463 aa13.78□□□□□ -0.2
SHKBP1-202ENST00000593764 CENPSQ8N2Z9 138 aa13.78□□□□□ -0.2
SHKBP1-202ENST00000593764 RNASEH2CQ8TDP1 164 aaKnown RBP13.78□□□□□ -0.2
SHKBP1-202ENST00000593764 HIPK2Q9H2X6 1198 aa13.78□□□□□ -0.2
SHKBP1-202ENST00000593764 RBKSQ9H477 322 aa13.78□□□□□ -0.2
SHKBP1-202ENST00000593764 IGHV3OR16-13A0A075B7E8 117 aa13.77□□□□□ -0.21
SHKBP1-202ENST00000593764 IGHV3-74A0A0B4J1X5 117 aa13.77□□□□□ -0.21
SHKBP1-202ENST00000593764 APOHP02749 345 aaPredicted RBP13.77□□□□□ -0.21
SHKBP1-202ENST00000593764 NPY1RP25929 384 aa13.77□□□□□ -0.21
SHKBP1-202ENST00000593764 PRSS54Q6PEW0 395 aa13.77□□□□□ -0.21
SHKBP1-202ENST00000593764 LILRB2Q8N423 598 aa13.77□□□□□ -0.21
SHKBP1-202ENST00000593764 U3KQ87 197 aa13.77□□□□□ -0.21
SHKBP1-202ENST00000593764 PIGBOS1A0A0B4J2F0 54 aa13.76□□□□□ -0.21
SHKBP1-202ENST00000593764 RPS10-NUDT3A0A1W2PQS6 291 aa13.76□□□□□ -0.21
SHKBP1-202ENST00000593764 NAP1L6A6NFF2 107 aa13.76□□□□□ -0.21
SHKBP1-202ENST00000593764 NDUFB6O95139 128 aa13.76□□□□□ -0.21
SHKBP1-202ENST00000593764 BTCP35070 178 aa13.76□□□□□ -0.21
SHKBP1-202ENST00000593764 INPP1P49441 399 aa13.76□□□□□ -0.21
SHKBP1-202ENST00000593764 DTD1Q8TEA8 209 aa13.76□□□□□ -0.21
SHKBP1-202ENST00000593764 GINS3Q9BRX5 216 aa13.76□□□□□ -0.21
SHKBP1-202ENST00000593764 VSIRQ9H7M9 311 aa13.76□□□□□ -0.21
SHKBP1-202ENST00000593764 FLVCR2Q9UPI3 526 aa13.76□□□□□ -0.21
SHKBP1-202ENST00000593764 LINC00854A0A1B0GVQ3 168 aa13.75□□□□□ -0.21
SHKBP1-202ENST00000593764 IGLC1P0CG04 106 aa13.75□□□□□ -0.21
SHKBP1-202ENST00000593764 SLC25A4P12235 298 aa13.75□□□□□ -0.21
SHKBP1-202ENST00000593764 SLC25A6P12236 298 aa13.75□□□□□ -0.21
SHKBP1-202ENST00000593764 IL7P13232 177 aa13.75□□□□□ -0.21
SHKBP1-202ENST00000593764 ODF3L2Q3SX64 289 aa13.75□□□□□ -0.21
SHKBP1-202ENST00000593764 TIGITQ495A1 244 aa13.75□□□□□ -0.21
SHKBP1-202ENST00000593764 OR1S1Q8NH92 325 aa13.75□□□□□ -0.21
SHKBP1-202ENST00000593764 ST8SIA2Q92186 375 aa13.75□□□□□ -0.21
SHKBP1-202ENST00000593764 EDA2RQ9HAV5 297 aa13.75□□□□□ -0.21
SHKBP1-202ENST00000593764 RETNQ9HD89 108 aa13.75□□□□□ -0.21
SHKBP1-202ENST00000593764 UBQLN2Q9UHD9 624 aa13.75□□□□□ -0.21
SHKBP1-202ENST00000593764 TRAV30A0A087WSZ9 112 aa13.74□□□□□ -0.21
SHKBP1-202ENST00000593764 IFNA10P01566 189 aa13.74□□□□□ -0.21
SHKBP1-202ENST00000593764 RND2P52198 227 aa13.74□□□□□ -0.21
SHKBP1-202ENST00000593764 UBE2MP61081 183 aaKnown RBP13.74□□□□□ -0.21
SHKBP1-202ENST00000593764 NOXA1Q86UR1 476 aa13.74□□□□□ -0.21
SHKBP1-202ENST00000593764 MUC7Q8TAX7 377 aa13.74□□□□□ -0.21
SHKBP1-202ENST00000593764 FAM110AQ9BQ89 295 aa13.74□□□□□ -0.21
SHKBP1-202ENST00000593764 TMED3Q9Y3Q3 217 aa13.74□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 65.5 ms