RNA–Protein interactions for RNA: ENST00000582092.1

SS18-220, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 215 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-220ENST00000582092 CXorf1O96002 111 aa7.42□□□□□ -1.22
SS18-220ENST00000582092 IGHV1-69P01742 117 aa7.42□□□□□ -1.22
SS18-220ENST00000582092 HSPB1P04792 205 aaKnown RBP7.42□□□□□ -1.22
SS18-220ENST00000582092 APELAP0DMC3 54 aa7.42□□□□□ -1.22
SS18-220ENST00000582092 CD24P25063 80 aa7.42□□□□□ -1.22
SS18-220ENST00000582092 OR10J1P30954 320 aa7.42□□□□□ -1.22
SS18-220ENST00000582092 SAA4P35542 130 aa7.42□□□□□ -1.22
SS18-220ENST00000582092 TAS2R45P59539 299 aa7.42□□□□□ -1.22
SS18-220ENST00000582092 CCL20P78556 96 aa7.42□□□□□ -1.22
SS18-220ENST00000582092 WT1-ASQ06250 92 aa7.42□□□□□ -1.22
SS18-220ENST00000582092 SCGB2A2Q13296 93 aa7.42□□□□□ -1.22
SS18-220ENST00000582092 HABP2Q14520 560 aaPredicted RBP7.42□□□□□ -1.22
SS18-220ENST00000582092 C5orf64Q2M2E5 130 aa7.42□□□□□ -1.22
SS18-220ENST00000582092 AKIRIN2Q53H80 203 aa7.42□□□□□ -1.22
SS18-220ENST00000582092 ZNF506Q5JVG8 444 aa7.42□□□□□ -1.22
SS18-220ENST00000582092 SPSB3Q6PJ21 355 aa7.42□□□□□ -1.22
SS18-220ENST00000582092 SLC35E3Q7Z769 313 aa7.42□□□□□ -1.22
SS18-220ENST00000582092 RPP25LQ8N5L8 163 aaKnown RBP7.42□□□□□ -1.22
SS18-220ENST00000582092 OR1P1Q8NH06 330 aa7.42□□□□□ -1.22
SS18-220ENST00000582092 CFHR4Q92496 578 aa7.42□□□□□ -1.22
SS18-220ENST00000582092 RARRES2Q99969 163 aa7.42□□□□□ -1.22
SS18-220ENST00000582092 GGTLC1Q9BX51 225 aa7.42□□□□□ -1.22
SS18-220ENST00000582092 NKX6-2Q9C056 277 aaPredicted RBP7.42□□□□□ -1.22
SS18-220ENST00000582092 VAX2Q9UIW0 290 aa7.42□□□□□ -1.22
SS18-220ENST00000582092 CARHSP1Q9Y2V2 147 aaKnown RBP7.42□□□□□ -1.22
SS18-220ENST00000582092 NIPBLQ6KC79 2804 aaeCLIP7.42□□□□□ -1.22
SS18-220ENST00000582092 JMJD1CQ15652 2540 aa7.41□□□□□ -1.22
SS18-220ENST00000582092 TET2Q6N021 2002 aaPredicted RBP7.41□□□□□ -1.22
SS18-220ENST00000582092 FCN1O00602 326 aa7.41□□□□□ -1.22
SS18-220ENST00000582092 HMGB3O15347 200 aaKnown RBP7.41□□□□□ -1.22
SS18-220ENST00000582092 NDUFA3O95167 84 aa7.41□□□□□ -1.22
SS18-220ENST00000582092 BCL2P10415 239 aa7.41□□□□□ -1.22
SS18-220ENST00000582092 SRD5A1P18405 259 aa7.41□□□□□ -1.22
SS18-220ENST00000582092 MDKP21741 143 aaPredicted RBP7.41□□□□□ -1.22
SS18-220ENST00000582092 BPIFB3P59826 476 aa7.41□□□□□ -1.22
SS18-220ENST00000582092 SELENOTP62341 195 aa7.41□□□□□ -1.22
SS18-220ENST00000582092 BTN1A1Q13410 526 aa7.41□□□□□ -1.22
SS18-220ENST00000582092 BSXQ3C1V8 233 aa7.41□□□□□ -1.22
SS18-220ENST00000582092 CYP2G1PQ6ZSU1 146 aa7.41□□□□□ -1.22
SS18-220ENST00000582092 STPG3Q8N7X2 389 aa7.41□□□□□ -1.22
SS18-220ENST00000582092 ZNF114Q8NC26 417 aa7.41□□□□□ -1.22
SS18-220ENST00000582092 OR1L4Q8NGR5 311 aa7.41□□□□□ -1.22
SS18-220ENST00000582092 OR2T6Q8NHC8 308 aa7.41□□□□□ -1.22
SS18-220ENST00000582092 TMEM170AQ8WVE7 144 aa7.41□□□□□ -1.22
SS18-220ENST00000582092 NPIPB3Q92617 1050 aa7.41□□□□□ -1.22
SS18-220ENST00000582092 ARPC1AQ92747 370 aa7.41□□□□□ -1.22
SS18-220ENST00000582092 PFDN5Q99471 154 aa7.41□□□□□ -1.22
SS18-220ENST00000582092 WNT10AQ9GZT5 417 aa7.41□□□□□ -1.22
SS18-220ENST00000582092 THYN1Q9P016 225 aa7.41□□□□□ -1.22
SS18-220ENST00000582092 F11RQ9Y624 299 aaKnown RBP7.41□□□□□ -1.22
SS18-220ENST00000582092 ABCA2Q9BZC7 2435 aa7.41□□□□□ -1.22
SS18-220ENST00000582092 IGHV3OR16-10A0A075B7F0 116 aa7.4□□□□□ -1.22
SS18-220ENST00000582092 CENPVL3A0A0U1RRI6 287 aa7.4□□□□□ -1.22
SS18-220ENST00000582092 LOC102723971A0A1B0GUV8 181 aa7.4□□□□□ -1.22
SS18-220ENST00000582092 IGLC7A0M8Q6 106 aa7.4□□□□□ -1.22
SS18-220ENST00000582092 SEC14L6B5MCN3 397 aa7.4□□□□□ -1.22
SS18-220ENST00000582092 E7EUB6 86 aa7.4□□□□□ -1.22
SS18-220ENST00000582092 COX7A2P2O60397 106 aa7.4□□□□□ -1.22
SS18-220ENST00000582092 SCO1O75880 301 aa7.4□□□□□ -1.22
SS18-220ENST00000582092 SRP14P37108 136 aaKnown RBP7.4□□□□□ -1.22
SS18-220ENST00000582092 RND2P52198 227 aa7.4□□□□□ -1.22
SS18-220ENST00000582092 EBI3Q14213 229 aa7.4□□□□□ -1.22
SS18-220ENST00000582092 ICAM4Q14773 271 aa7.4□□□□□ -1.22
SS18-220ENST00000582092 MLANAQ16655 118 aa7.4□□□□□ -1.22
SS18-220ENST00000582092 CST9LP1Q5W188 147 aa7.4□□□□□ -1.22
SS18-220ENST00000582092 ZNF562Q6V9R5 426 aa7.4□□□□□ -1.22
SS18-220ENST00000582092 S100A7AQ86SG5 101 aa7.4□□□□□ -1.22
SS18-220ENST00000582092 SUN5Q8TC36 379 aa7.4□□□□□ -1.22
SS18-220ENST00000582092 NIPSNAP3BQ9BS92 247 aa7.4□□□□□ -1.22
SS18-220ENST00000582092 RPS10P5Q9NQ39 176 aa7.4□□□□□ -1.22
SS18-220ENST00000582092 HIF1ANQ9NWT6 349 aa7.4□□□□□ -1.22
SS18-220ENST00000582092 TECRQ9NZ01 308 aaKnown RBP7.4□□□□□ -1.22
SS18-220ENST00000582092 SLC45A2Q9UMX9 530 aa7.4□□□□□ -1.22
SS18-220ENST00000582092 LSM4Q9Y4Z0 139 aaKnown RBP7.4□□□□□ -1.22
SS18-220ENST00000582092 PUS1Q9Y606 427 aaKnown RBP eCLIP7.4□□□□□ -1.22
SS18-220ENST00000582092 ARHGAP32A7KAX9 2087 aa7.4□□□□□ -1.23
SS18-220ENST00000582092 ZANQ9Y493 2812 aa7.4□□□□□ -1.23
SS18-220ENST00000582092 ZNF469Q96JG9 3925 aaPredicted RBP7.39□□□□□ -1.23
SS18-220ENST00000582092 TRAV40A0A0B4J280 105 aa7.39□□□□□ -1.23
SS18-220ENST00000582092 TCRBV4S1A1TA0A5B7 111 aa7.39□□□□□ -1.23
SS18-220ENST00000582092 CGB1A6NKQ9 187 aa7.39□□□□□ -1.23
SS18-220ENST00000582092 SRP19P09132 144 aaKnown RBP7.39□□□□□ -1.23
SS18-220ENST00000582092 OR5G3P0C626 314 aa7.39□□□□□ -1.23
SS18-220ENST00000582092 AREGP15514 252 aa7.39□□□□□ -1.23
SS18-220ENST00000582092 PAX6P26367 422 aa7.39□□□□□ -1.23
SS18-220ENST00000582092 PMS2P11Q13670 270 aa7.39□□□□□ -1.23
SS18-220ENST00000582092 ZNF726P1Q15940 193 aa7.39□□□□□ -1.23
SS18-220ENST00000582092 LDLRAD2Q5SZI1 272 aa7.39□□□□□ -1.23
SS18-220ENST00000582092 FAM120AOSQ5T036 256 aa7.39□□□□□ -1.23
SS18-220ENST00000582092 FAM78BQ5VT40 261 aa7.39□□□□□ -1.23
SS18-220ENST00000582092 DYNAPQ8N1N2 210 aa7.39□□□□□ -1.23
SS18-220ENST00000582092 OR4F5Q8NH21 305 aa7.39□□□□□ -1.23
SS18-220ENST00000582092 GATAD1Q8WUU5 269 aa7.39□□□□□ -1.23
SS18-220ENST00000582092 C1orf159Q96HA4 380 aa7.39□□□□□ -1.23
SS18-220ENST00000582092 OR4F4Q96R69 305 aa7.39□□□□□ -1.23
SS18-220ENST00000582092 TXNDC17Q9BRA2 123 aa7.39□□□□□ -1.23
SS18-220ENST00000582092 SLC25A33Q9BSK2 321 aa7.39□□□□□ -1.23
SS18-220ENST00000582092 MRPL32Q9BYC8 188 aaKnown RBP7.39□□□□□ -1.23
SS18-220ENST00000582092 DNAJC4Q9NNZ3 241 aa7.39□□□□□ -1.23
SS18-220ENST00000582092 TNFRSF19Q9NS68 423 aa7.39□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 72.5 ms