RNA–Protein interactions for RNA: ENST00000577636.5

SS18-207, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 580 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-207ENST00000577636 NPBQ8NG41 125 aa8.05□□□□□ -1.12
SS18-207ENST00000577636 RNASEH2CQ8TDP1 164 aaKnown RBP8.05□□□□□ -1.12
SS18-207ENST00000577636 CFHR4Q92496 578 aa8.05□□□□□ -1.12
SS18-207ENST00000577636 EAF1Q96JC9 268 aaPredicted RBP8.05□□□□□ -1.12
SS18-207ENST00000577636 RITA1Q96K30 269 aa8.05□□□□□ -1.12
SS18-207ENST00000577636 SLC35E1Q96K37 410 aa8.05□□□□□ -1.12
SS18-207ENST00000577636 FAM210AQ96ND0 272 aa8.05□□□□□ -1.12
SS18-207ENST00000577636 SRSF8Q9BRL6 282 aaKnown RBP8.05□□□□□ -1.12
SS18-207ENST00000577636 FBXL15Q9H469 300 aa8.05□□□□□ -1.12
SS18-207ENST00000577636 VPREB3Q9UKI3 123 aa8.05□□□□□ -1.12
SS18-207ENST00000577636 TET2Q6N021 2002 aaPredicted RBP8.04□□□□□ -1.12
SS18-207ENST00000577636 PMS2P5A8MQ11 134 aa8.04□□□□□ -1.12
SS18-207ENST00000577636 KRBOX1C9JBD0 128 aa8.04□□□□□ -1.12
SS18-207ENST00000577636 CORTO00230 105 aa8.04□□□□□ -1.12
SS18-207ENST00000577636 CRYGBP07316 175 aa8.04□□□□□ -1.12
SS18-207ENST00000577636 MYOD1P15172 320 aa8.04□□□□□ -1.12
SS18-207ENST00000577636 PJVKQ0ZLH3 352 aa8.04□□□□□ -1.12
SS18-207ENST00000577636 LY6EQ16553 131 aa8.04□□□□□ -1.12
SS18-207ENST00000577636 AANATQ16613 207 aa8.04□□□□□ -1.12
SS18-207ENST00000577636 TMEM41BQ5BJD5 291 aa8.04□□□□□ -1.12
SS18-207ENST00000577636 KPRPQ5T749 579 aaPredicted RBP8.04□□□□□ -1.12
SS18-207ENST00000577636 TEPPQ6URK8 271 aa8.04□□□□□ -1.12
SS18-207ENST00000577636 EIF4E3Q8N5X7 224 aaKnown RBP8.04□□□□□ -1.12
SS18-207ENST00000577636 OR1L6Q8NGR2 347 aa8.04□□□□□ -1.12
SS18-207ENST00000577636 ABHD5Q8WTS1 349 aa8.04□□□□□ -1.12
SS18-207ENST00000577636 CACNG8Q8WXS5 425 aa8.04□□□□□ -1.12
SS18-207ENST00000577636 RSG1Q9BU20 258 aa8.04□□□□□ -1.12
SS18-207ENST00000577636 PBDC1Q9BVG4 233 aa8.04□□□□□ -1.12
SS18-207ENST00000577636 AURKAIP1Q9NWT8 199 aaPredicted RBP8.04□□□□□ -1.12
SS18-207ENST00000577636 WDR83OSQ9Y284 106 aa8.04□□□□□ -1.12
SS18-207ENST00000577636 ANKRD34BA5PLL1 514 aa8.03□□□□□ -1.12
SS18-207ENST00000577636 NDUFA3O95167 84 aa8.03□□□□□ -1.12
SS18-207ENST00000577636 RNASE2P10153 161 aaKnown RBP8.03□□□□□ -1.12
SS18-207ENST00000577636 CNTFRP26992 372 aa8.03□□□□□ -1.12
SS18-207ENST00000577636 GPX4P36969 197 aaPredicted RBP8.03□□□□□ -1.12
SS18-207ENST00000577636 EBI3Q14213 229 aa8.03□□□□□ -1.12
SS18-207ENST00000577636 C5orf64Q2M2E5 130 aa8.03□□□□□ -1.12
SS18-207ENST00000577636 ACOT6Q3I5F7 207 aaPredicted RBP8.03□□□□□ -1.12
SS18-207ENST00000577636 CENPVQ7Z7K6 275 aaPredicted RBP8.03□□□□□ -1.12
SS18-207ENST00000577636 KLHDC1Q8N7A1 406 aa8.03□□□□□ -1.12
SS18-207ENST00000577636 OR10W1Q8NGF6 305 aa8.03□□□□□ -1.12
SS18-207ENST00000577636 RBMXL1Q96E39 390 aaKnown RBP8.03□□□□□ -1.12
SS18-207ENST00000577636 NARS2Q96I59 477 aaKnown RBP8.03□□□□□ -1.12
SS18-207ENST00000577636 RASL11BQ9BPW5 248 aa8.03□□□□□ -1.12
SS18-207ENST00000577636 NPCDR1Q9BY65 106 aa8.03□□□□□ -1.12
SS18-207ENST00000577636 DEFA4P12838 97 aa8.02□□□□□ -1.13
SS18-207ENST00000577636 OPRK1P41145 380 aa8.02□□□□□ -1.13
SS18-207ENST00000577636 ELLP55199 621 aaPredicted RBP8.02□□□□□ -1.13
SS18-207ENST00000577636 BSXQ3C1V8 233 aa8.02□□□□□ -1.13
SS18-207ENST00000577636 DEFB121Q5J5C9 76 aa8.02□□□□□ -1.13
SS18-207ENST00000577636 FFAR4Q5NUL3 377 aa8.02□□□□□ -1.13
SS18-207ENST00000577636 C10orf55Q5SWW7 151 aa8.02□□□□□ -1.13
SS18-207ENST00000577636 LDLRAD2Q5SZI1 272 aa8.02□□□□□ -1.13
SS18-207ENST00000577636 SFT2D1Q8WV19 159 aa8.02□□□□□ -1.13
SS18-207ENST00000577636 SRSF12Q8WXF0 261 aaKnown RBP8.02□□□□□ -1.13
SS18-207ENST00000577636 ACTR3CQ9C0K3 210 aaPredicted RBP8.02□□□□□ -1.13
SS18-207ENST00000577636 TREM1Q9NP99 234 aa8.02□□□□□ -1.13
SS18-207ENST00000577636 TPSG1Q9NRR2 321 aa8.02□□□□□ -1.13
SS18-207ENST00000577636 PRSS46E5RG02 174 aa8.01□□□□□ -1.13
SS18-207ENST00000577636 H3BUX3 64 aa8.01□□□□□ -1.13
SS18-207ENST00000577636 AGPAT2O15120 278 aa8.01□□□□□ -1.13
SS18-207ENST00000577636 PLXNB1O43157 2135 aa8.01□□□□□ -1.13
SS18-207ENST00000577636 MT-CO2P00403 227 aa8.01□□□□□ -1.13
SS18-207ENST00000577636 IFNA1P01562 189 aa8.01□□□□□ -1.13
SS18-207ENST00000577636 CD24P25063 80 aa8.01□□□□□ -1.13
SS18-207ENST00000577636 PAX6P26367 422 aa8.01□□□□□ -1.13
SS18-207ENST00000577636 WT1-ASQ06250 92 aa8.01□□□□□ -1.13
SS18-207ENST00000577636 CD69Q07108 199 aa8.01□□□□□ -1.13
SS18-207ENST00000577636 FXYD3Q14802 87 aa8.01□□□□□ -1.13
SS18-207ENST00000577636 PEA15Q15121 130 aa8.01□□□□□ -1.13
SS18-207ENST00000577636 SLC16A13Q7RTY0 426 aa8.01□□□□□ -1.13
SS18-207ENST00000577636 ZNF114Q8NC26 417 aa8.01□□□□□ -1.13
SS18-207ENST00000577636 OR10G4Q8NGN3 311 aa8.01□□□□□ -1.13
SS18-207ENST00000577636 OR10G9Q8NGN4 311 aa8.01□□□□□ -1.13
SS18-207ENST00000577636 OR10G7Q8NGN6 311 aa8.01□□□□□ -1.13
SS18-207ENST00000577636 OR1P1Q8NH06 330 aa8.01□□□□□ -1.13
SS18-207ENST00000577636 OR5R1Q8NH85 324 aa8.01□□□□□ -1.13
SS18-207ENST00000577636 OR2T6Q8NHC8 308 aa8.01□□□□□ -1.13
SS18-207ENST00000577636 P2RX4Q99571 388 aa8.01□□□□□ -1.13
SS18-207ENST00000577636 SSX3Q99909 188 aa8.01□□□□□ -1.13
SS18-207ENST00000577636 EIF5A2Q9GZV4 153 aaKnown RBP8.01□□□□□ -1.13
SS18-207ENST00000577636 SLC39A9Q9NUM3 307 aa8.01□□□□□ -1.13
SS18-207ENST00000577636 TRAV1-1A0A0B4J248 108 aa8□□□□□ -1.13
SS18-207ENST00000577636 A0A1W2PPV4 95 aa8□□□□□ -1.13
SS18-207ENST00000577636 IGLC7A0M8Q6 106 aa8□□□□□ -1.13
SS18-207ENST00000577636 M6PRP20645 277 aa8□□□□□ -1.13
SS18-207ENST00000577636 ZP3P21754 424 aa8□□□□□ -1.13
SS18-207ENST00000577636 FHITP49789 147 aa8□□□□□ -1.13
SS18-207ENST00000577636 ARSJQ5FYB0 599 aaPredicted RBP8□□□□□ -1.13
SS18-207ENST00000577636 TOR2AQ5JU69 321 aa8□□□□□ -1.13
SS18-207ENST00000577636 ZNF562Q6V9R5 426 aa8□□□□□ -1.13
SS18-207ENST00000577636 TMEM144Q7Z5S9 345 aa8□□□□□ -1.13
SS18-207ENST00000577636 DYNAPQ8N1N2 210 aa8□□□□□ -1.13
SS18-207ENST00000577636 Q8N6K4 173 aa8□□□□□ -1.13
SS18-207ENST00000577636 LYPD6BQ8NI32 183 aa8□□□□□ -1.13
SS18-207ENST00000577636 TMEM170AQ8WVE7 144 aa8□□□□□ -1.13
SS18-207ENST00000577636 C17orf50Q8WW18 174 aa8□□□□□ -1.13
SS18-207ENST00000577636 ARPC1AQ92747 370 aa8□□□□□ -1.13
SS18-207ENST00000577636 MISP3Q96FF7 219 aa8□□□□□ -1.13
SS18-207ENST00000577636 ACY3Q96HD9 319 aa8□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 52.5 ms