RNA–Protein interactions for RNA: ENST00000549414.6

CUX1-213, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,452 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-213ENST00000549414 DUX4L9Q6RFH8 374 aaPredicted RBP13.42□□□□□ -0.26
CUX1-213ENST00000549414 MRPL32Q9BYC8 188 aaKnown RBP13.42□□□□□ -0.26
CUX1-213ENST00000549414 A0A1W2PNU3 283 aaPredicted RBP13.42□□□□□ -0.26
CUX1-213ENST00000549414 TCF23Q7RTU1 214 aa13.42□□□□□ -0.26
CUX1-213ENST00000549414 MBD3L1Q8WWY6 194 aa13.42□□□□□ -0.26
CUX1-213ENST00000549414 C19orf24Q9BVV8 132 aa13.42□□□□□ -0.26
CUX1-213ENST00000549414 GGTLC1Q9BX51 225 aa13.42□□□□□ -0.26
CUX1-213ENST00000549414 AMY1AP04745 511 aa13.41□□□□□ -0.26
CUX1-213ENST00000549414 OR8A1Q8NGG7 326 aa13.41□□□□□ -0.26
CUX1-213ENST00000549414 RNASE7Q9H1E1 156 aaKnown RBP13.41□□□□□ -0.26
CUX1-213ENST00000549414 MBNL3Q9NUK0 354 aaKnown RBP13.41□□□□□ -0.26
CUX1-213ENST00000549414 MSRB2Q9Y3D2 182 aa13.41□□□□□ -0.26
CUX1-213ENST00000549414 TNFSF13O75888 250 aa13.41□□□□□ -0.26
CUX1-213ENST00000549414 PRSS1P07477 247 aa13.41□□□□□ -0.26
CUX1-213ENST00000549414 ADIPOQQ15848 244 aa13.41□□□□□ -0.26
CUX1-213ENST00000549414 TEX50A0A1B0GTY4 177 aa13.41□□□□□ -0.26
CUX1-213ENST00000549414 BMPR1BO00238 502 aa13.41□□□□□ -0.26
CUX1-213ENST00000549414 MT-ND6P03923 174 aa13.41□□□□□ -0.26
CUX1-213ENST00000549414 PKIAP61925 76 aa13.41□□□□□ -0.26
CUX1-213ENST00000549414 PRCDQ00LT1 54 aa13.41□□□□□ -0.26
CUX1-213ENST00000549414 WNT10AQ9GZT5 417 aa13.41□□□□□ -0.26
CUX1-213ENST00000549414 CXCL1P09341 107 aa13.41□□□□□ -0.26
CUX1-213ENST00000549414 LYPD2Q6UXB3 125 aa13.41□□□□□ -0.26
CUX1-213ENST00000549414 DERL1Q9BUN8 251 aa13.41□□□□□ -0.26
CUX1-213ENST00000549414 TRAV5A0A0B4J249 113 aa13.4□□□□□ -0.26
CUX1-213ENST00000549414 MUC21A0A0G2JKD1 596 aa13.4□□□□□ -0.26
CUX1-213ENST00000549414 MUC21A0A140T8X8 626 aa13.4□□□□□ -0.26
CUX1-213ENST00000549414 HLA-DQA1P01909 254 aa13.4□□□□□ -0.26
CUX1-213ENST00000549414 ATP5IP56385 69 aaPredicted RBP13.4□□□□□ -0.26
CUX1-213ENST00000549414 GNG5P63218 68 aa13.4□□□□□ -0.26
CUX1-213ENST00000549414 MUC21Q5SSG8 566 aa13.4□□□□□ -0.26
CUX1-213ENST00000549414 OR52E5Q8NH55 327 aa13.4□□□□□ -0.26
CUX1-213ENST00000549414 IGKV1-16P04430 117 aa13.4□□□□□ -0.26
CUX1-213ENST00000549414 CD69Q07108 199 aa13.4□□□□□ -0.26
CUX1-213ENST00000549414 MLANAQ16655 118 aa13.4□□□□□ -0.26
CUX1-213ENST00000549414 HEPN1Q6WQI6 88 aa13.4□□□□□ -0.26
CUX1-213ENST00000549414 PPP1R27Q86WC6 154 aa13.4□□□□□ -0.26
CUX1-213ENST00000549414 GAFA1Q96PS6 74 aa13.4□□□□□ -0.26
CUX1-213ENST00000549414 SEPSECSQ9HD40 501 aaKnown RBP13.4□□□□□ -0.26
CUX1-213ENST00000549414 A0A087WWC5 75 aa13.39□□□□□ -0.27
CUX1-213ENST00000549414 TMEM189A5PLL7 270 aa13.39□□□□□ -0.27
CUX1-213ENST00000549414 TMEM178BH3BS89 294 aa13.39□□□□□ -0.27
CUX1-213ENST00000549414 ZNF672Q499Z4 452 aaPredicted RBP13.39□□□□□ -0.27
CUX1-213ENST00000549414 LYPD6Q86Y78 171 aa13.39□□□□□ -0.27
CUX1-213ENST00000549414 CACNG8Q8WXS5 425 aa13.39□□□□□ -0.27
CUX1-213ENST00000549414 FGF23Q9GZV9 251 aaPredicted RBP13.39□□□□□ -0.27
CUX1-213ENST00000549414 TIMM23O14925 209 aa13.39□□□□□ -0.27
CUX1-213ENST00000549414 IGKV1-39P01597 117 aa13.39□□□□□ -0.27
CUX1-213ENST00000549414 IGKV1D-39P04432 117 aa13.39□□□□□ -0.27
CUX1-213ENST00000549414 DLX1P56177 255 aa13.39□□□□□ -0.27
CUX1-213ENST00000549414 TUBA4BQ9H853 241 aa13.39□□□□□ -0.27
CUX1-213ENST00000549414 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP13.39□□□□□ -0.27
CUX1-213ENST00000549414 PTTG1IPP53801 180 aa13.39□□□□□ -0.27
CUX1-213ENST00000549414 M0R143 59 aa13.39□□□□□ -0.27
CUX1-213ENST00000549414 TDGF1P13385 188 aa13.39□□□□□ -0.27
CUX1-213ENST00000549414 ATOH7Q8N100 152 aa13.39□□□□□ -0.27
CUX1-213ENST00000549414 OCC1Q8TAD7 63 aa13.39□□□□□ -0.27
CUX1-213ENST00000549414 PEX7O00628 323 aa13.38□□□□□ -0.27
CUX1-213ENST00000549414 COMPP49747 757 aaPredicted RBP13.38□□□□□ -0.27
CUX1-213ENST00000549414 C16orf92Q96LL3 132 aa13.38□□□□□ -0.27
CUX1-213ENST00000549414 C15orf62A8K5M9 175 aa13.38□□□□□ -0.27
CUX1-213ENST00000549414 RELBQ01201 579 aa13.38□□□□□ -0.27
CUX1-213ENST00000549414 CENPVQ7Z7K6 275 aaPredicted RBP13.38□□□□□ -0.27
CUX1-213ENST00000549414 TMEM191AQ9H0A3 160 aa13.38□□□□□ -0.27
CUX1-213ENST00000549414 GPX4P36969 197 aaPredicted RBP13.38□□□□□ -0.27
CUX1-213ENST00000549414 TWIST1Q15672 202 aa13.38□□□□□ -0.27
CUX1-213ENST00000549414 RANBP2P49792 3224 aaKnown RBP13.38□□□□□ -0.27
CUX1-213ENST00000549414 HIST1H2BKO60814 126 aa13.37□□□□□ -0.27
CUX1-213ENST00000549414 WISP2O76076 250 aa13.37□□□□□ -0.27
CUX1-213ENST00000549414 HIST1H2BJP06899 126 aa13.37□□□□□ -0.27
CUX1-213ENST00000549414 HIST1H2BOP23527 126 aa13.37□□□□□ -0.27
CUX1-213ENST00000549414 HIST1H2BBP33778 126 aa13.37□□□□□ -0.27
CUX1-213ENST00000549414 HIST1H2BDP58876 126 aa13.37□□□□□ -0.27
CUX1-213ENST00000549414 HIST1H2BCP62807 126 aa13.37□□□□□ -0.27
CUX1-213ENST00000549414 HIST2H2BEQ16778 126 aa13.37□□□□□ -0.27
CUX1-213ENST00000549414 HIST2H2BFQ5QNW6 126 aaPredicted RBP13.37□□□□□ -0.27
CUX1-213ENST00000549414 PRSS33Q8NF86 280 aa13.37□□□□□ -0.27
CUX1-213ENST00000549414 HIST1H2BHQ93079 126 aa13.37□□□□□ -0.27
CUX1-213ENST00000549414 HIST1H2BNQ99877 126 aa13.37□□□□□ -0.27
CUX1-213ENST00000549414 HIST1H2BMQ99879 126 aa13.37□□□□□ -0.27
CUX1-213ENST00000549414 GPR183P32249 361 aa13.37□□□□□ -0.27
CUX1-213ENST00000549414 PAX9P55771 341 aa13.37□□□□□ -0.27
CUX1-213ENST00000549414 SPANXN1Q5VSR9 72 aa13.37□□□□□ -0.27
CUX1-213ENST00000549414 C1QL4Q86Z23 238 aa13.37□□□□□ -0.27
CUX1-213ENST00000549414 K7EM74 188 aa13.37□□□□□ -0.27
CUX1-213ENST00000549414 TMEM78Q5T7P6 136 aa13.37□□□□□ -0.27
CUX1-213ENST00000549414 MGST2Q99735 147 aa13.37□□□□□ -0.27
CUX1-213ENST00000549414 MAS1LP35410 378 aa13.37□□□□□ -0.27
CUX1-213ENST00000549414 RNASEH2CQ8TDP1 164 aaKnown RBP13.37□□□□□ -0.27
CUX1-213ENST00000549414 METTL26Q96S19 204 aa13.37□□□□□ -0.27
CUX1-213ENST00000549414 FBXL7Q9UJT9 491 aa13.37□□□□□ -0.27
CUX1-213ENST00000549414 IGHV3OR16-12A0A075B7B8 117 aa13.36□□□□□ -0.27
CUX1-213ENST00000549414 CA1P00915 261 aaPredicted RBP13.36□□□□□ -0.27
CUX1-213ENST00000549414 MGPP08493 103 aa13.36□□□□□ -0.27
CUX1-213ENST00000549414 RPL7P18124 248 aaKnown RBP13.36□□□□□ -0.27
CUX1-213ENST00000549414 PAFAH1B2P68402 229 aa13.36□□□□□ -0.27
CUX1-213ENST00000549414 FAM209BQ5JX69 171 aa13.36□□□□□ -0.27
CUX1-213ENST00000549414 GFI1BQ5VTD9 330 aa13.36□□□□□ -0.27
CUX1-213ENST00000549414 SPSB3Q6PJ21 355 aa13.36□□□□□ -0.27
CUX1-213ENST00000549414 TMEM183AQ8IXX5 376 aa13.36□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 85.8 ms