RNA–Protein interactions for RNA: ENST00000533222.5

CD44-236, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 581 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-236ENST00000533222 PELI1Q96FA3 418 aa4.45□□□□□ -1.7
CD44-236ENST00000533222 LINC00479Q96M42 142 aa4.45□□□□□ -1.7
CD44-236ENST00000533222 GFI1Q99684 422 aa4.45□□□□□ -1.7
CD44-236ENST00000533222 TMEM59Q9BXS4 323 aa4.45□□□□□ -1.7
CD44-236ENST00000533222 SLC25A39Q9BZJ4 359 aaPredicted RBP4.45□□□□□ -1.7
CD44-236ENST00000533222 C5orf66Q9H5L9 145 aa4.45□□□□□ -1.7
CD44-236ENST00000533222 EDA2RQ9HAV5 297 aa4.45□□□□□ -1.7
CD44-236ENST00000533222 HRASLS2Q9NWW9 162 aa4.45□□□□□ -1.7
CD44-236ENST00000533222 IL36BQ9NZH7 164 aa4.45□□□□□ -1.7
CD44-236ENST00000533222 KLF12Q9Y4X4 402 aa4.45□□□□□ -1.7
CD44-236ENST00000533222 TIMM9Q9Y5J7 89 aa4.45□□□□□ -1.7
CD44-236ENST00000533222 INSIG2Q9Y5U4 225 aa4.45□□□□□ -1.7
CD44-236ENST00000533222 CASP8AP2Q9UKL3 1982 aa4.45□□□□□ -1.7
CD44-236ENST00000533222 CKAP5Q14008 2032 aa4.45□□□□□ -1.7
CD44-236ENST00000533222 DOCK6Q96HP0 2047 aa4.45□□□□□ -1.7
CD44-236ENST00000533222 A0A0A0MQY5 61 aa4.44□□□□□ -1.7
CD44-236ENST00000533222 TMED7-TICAM2A0A0A6YYA0 188 aa4.44□□□□□ -1.7
CD44-236ENST00000533222 EPM2AB3EWF7 344 aa4.44□□□□□ -1.7
CD44-236ENST00000533222 J3QLW9 94 aa4.44□□□□□ -1.7
CD44-236ENST00000533222 FFAR1O14842 300 aa4.44□□□□□ -1.7
CD44-236ENST00000533222 SSSCA1O60232 199 aa4.44□□□□□ -1.7
CD44-236ENST00000533222 NEURL1O76050 574 aa4.44□□□□□ -1.7
CD44-236ENST00000533222 CECR9P0C854 216 aa4.44□□□□□ -1.7
CD44-236ENST00000533222 CRYGSP22914 178 aa4.44□□□□□ -1.7
CD44-236ENST00000533222 RPL34P49207 117 aaKnown RBP4.44□□□□□ -1.7
CD44-236ENST00000533222 CCL20P78556 96 aa4.44□□□□□ -1.7
CD44-236ENST00000533222 C4orf26Q17RF5 130 aa4.44□□□□□ -1.7
CD44-236ENST00000533222 ETDBQ3ZM63 59 aa4.44□□□□□ -1.7
CD44-236ENST00000533222 MS4A13Q5J8X5 152 aa4.44□□□□□ -1.7
CD44-236ENST00000533222 CFAP126Q5VTH2 177 aa4.44□□□□□ -1.7
CD44-236ENST00000533222 TMEM207Q6UWW9 146 aa4.44□□□□□ -1.7
CD44-236ENST00000533222 PQLC2Q6ZP29 291 aa4.44□□□□□ -1.7
CD44-236ENST00000533222 Q71RC1 249 aaPredicted RBP4.44□□□□□ -1.7
CD44-236ENST00000533222 ZNF550Q7Z398 422 aa4.44□□□□□ -1.7
CD44-236ENST00000533222 C11orf53Q8IXP5 236 aa4.44□□□□□ -1.7
CD44-236ENST00000533222 SLC25A45Q8N413 288 aa4.44□□□□□ -1.7
CD44-236ENST00000533222 PRSS3P2Q8NHM4 247 aa4.44□□□□□ -1.7
CD44-236ENST00000533222 ZNF721Q8TF20 911 aa4.44□□□□□ -1.7
CD44-236ENST00000533222 TSKUQ8WUA8 353 aa4.44□□□□□ -1.7
CD44-236ENST00000533222 CT55Q8WUE5 264 aa4.44□□□□□ -1.7
CD44-236ENST00000533222 COPS9Q8WXC6 57 aa4.44□□□□□ -1.7
CD44-236ENST00000533222 BMFQ96LC9 184 aa4.44□□□□□ -1.7
CD44-236ENST00000533222 AMELYQ99218 206 aa4.44□□□□□ -1.7
CD44-236ENST00000533222 C20orf78Q9BR46 151 aa4.44□□□□□ -1.7
CD44-236ENST00000533222 TMEM222Q9H0R3 208 aa4.44□□□□□ -1.7
CD44-236ENST00000533222 C11orf1Q9H5F2 150 aa4.44□□□□□ -1.7
CD44-236ENST00000533222 GNB4Q9HAV0 340 aa4.44□□□□□ -1.7
CD44-236ENST00000533222 MSRB1Q9NZV6 116 aa4.44□□□□□ -1.7
CD44-236ENST00000533222 KLF13Q9Y2Y9 288 aaPredicted RBP4.44□□□□□ -1.7
CD44-236ENST00000533222 TMED7Q9Y3B3 224 aa4.44□□□□□ -1.7
CD44-236ENST00000533222 PLXNA1Q9UIW2 1896 aa4.43□□□□□ -1.7
CD44-236ENST00000533222 SCN2AQ99250 2005 aa4.43□□□□□ -1.7
CD44-236ENST00000533222 TRBV20-1A0A075B6N2 111 aa4.43□□□□□ -1.7
CD44-236ENST00000533222 TRAV18A0A075B6X5 111 aa4.43□□□□□ -1.7
CD44-236ENST00000533222 A0A1B0GWB2 263 aa4.43□□□□□ -1.7
CD44-236ENST00000533222 C15orf61A6NNL5 157 aa4.43□□□□□ -1.7
CD44-236ENST00000533222 H0YIG0 161 aa4.43□□□□□ -1.7
CD44-236ENST00000533222 BMPR1BO00238 502 aa4.43□□□□□ -1.7
CD44-236ENST00000533222 CLDN14O95500 239 aa4.43□□□□□ -1.7
CD44-236ENST00000533222 CD55P08174 381 aa4.43□□□□□ -1.7
CD44-236ENST00000533222 EDN2P20800 178 aa4.43□□□□□ -1.7
CD44-236ENST00000533222 LEPP41159 167 aa4.43□□□□□ -1.7
CD44-236ENST00000533222 CLDN2P57739 230 aa4.43□□□□□ -1.7
CD44-236ENST00000533222 RPS15AP62244 130 aaKnown RBP4.43□□□□□ -1.7
CD44-236ENST00000533222 HERVK_113P63121 156 aa4.43□□□□□ -1.7
CD44-236ENST00000533222 TAF10Q12962 218 aa4.43□□□□□ -1.7
CD44-236ENST00000533222 UNC119Q13432 240 aa4.43□□□□□ -1.7
CD44-236ENST00000533222 WFDC2Q14508 124 aa4.43□□□□□ -1.7
CD44-236ENST00000533222 INSL4Q14641 139 aa4.43□□□□□ -1.7
CD44-236ENST00000533222 ZNF141Q15928 474 aa4.43□□□□□ -1.7
CD44-236ENST00000533222 ODF3L2Q3SX64 289 aa4.43□□□□□ -1.7
CD44-236ENST00000533222 Q56UQ5 140 aa4.43□□□□□ -1.7
CD44-236ENST00000533222 C10orf25Q5T742 122 aa4.43□□□□□ -1.7
CD44-236ENST00000533222 STPG1Q5TH74 334 aa4.43□□□□□ -1.7
CD44-236ENST00000533222 LINC01545Q5VT33 79 aa4.43□□□□□ -1.7
CD44-236ENST00000533222 Q5XG85 94 aa4.43□□□□□ -1.7
CD44-236ENST00000533222 ACP7Q6ZNF0 438 aa4.43□□□□□ -1.7
CD44-236ENST00000533222 OR10AC1Q8NH08 325 aa4.43□□□□□ -1.7
CD44-236ENST00000533222 PHLDA1Q8WV24 401 aaPredicted RBP4.43□□□□□ -1.7
CD44-236ENST00000533222 H1FXQ92522 213 aaKnown RBP4.43□□□□□ -1.7
CD44-236ENST00000533222 SPATA33Q96N06 139 aa4.43□□□□□ -1.7
CD44-236ENST00000533222 VSIRQ9H7M9 311 aa4.43□□□□□ -1.7
CD44-236ENST00000533222 JPT2Q9H910 190 aa4.43□□□□□ -1.7
CD44-236ENST00000533222 TECRQ9NZ01 308 aaKnown RBP4.43□□□□□ -1.7
CD44-236ENST00000533222 C9JCJ5 164 aa4.42□□□□□ -1.7
CD44-236ENST00000533222 PIN1P1O15428 100 aa4.42□□□□□ -1.7
CD44-236ENST00000533222 HCRTO43612 131 aa4.42□□□□□ -1.7
CD44-236ENST00000533222 NDUFS7O75251 213 aa4.42□□□□□ -1.7
CD44-236ENST00000533222 NKX2-2O95096 273 aa4.42□□□□□ -1.7
CD44-236ENST00000533222 CPSF4O95639 269 aaKnown RBP4.42□□□□□ -1.7
CD44-236ENST00000533222 CT62P0C5K7 136 aa4.42□□□□□ -1.7
CD44-236ENST00000533222 FGF6P10767 208 aa4.42□□□□□ -1.7
CD44-236ENST00000533222 GATA2P23769 480 aaPredicted RBP4.42□□□□□ -1.7
CD44-236ENST00000533222 PGFP49763 221 aa4.42□□□□□ -1.7
CD44-236ENST00000533222 LIM2P55344 173 aa4.42□□□□□ -1.7
CD44-236ENST00000533222 TAS2R45P59539 299 aa4.42□□□□□ -1.7
CD44-236ENST00000533222 SUPT4H1P63272 117 aaKnown RBP4.42□□□□□ -1.7
CD44-236ENST00000533222 HSPB3Q12988 150 aa4.42□□□□□ -1.7
CD44-236ENST00000533222 EIF3IQ13347 325 aaKnown RBP4.42□□□□□ -1.7
CD44-236ENST00000533222 FAM27D1Q5T7N8 215 aa4.42□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 177 ms