RNA–Protein interactions for RNA: ENST00000515459.5

LMNA-223, Transcript of lamin A/C, human

TSL 5

Gene LMNA, Length 757 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LMNA-223	ENST00000515459	LPCAT3	Q6P1A2	487 aa		11.33	□□□□□ -0.6
LMNA-223	ENST00000515459	TBC1D26	Q86UD7	250 aa		11.33	□□□□□ -0.6
LMNA-223	ENST00000515459	DCANP1	Q8TF63	244 aa		11.33	□□□□□ -0.6
LMNA-223	ENST00000515459	MRGPRF	Q96AM1	343 aa		11.33	□□□□□ -0.6
LMNA-223	ENST00000515459	LOC100506127	A0A0U1RQW1	187 aa		11.32	□□□□□ -0.6
LMNA-223	ENST00000515459	TMEM127	O75204	238 aa		11.32	□□□□□ -0.6
LMNA-223	ENST00000515459	IGKV1-39	P01597	117 aa		11.32	□□□□□ -0.6
LMNA-223	ENST00000515459	IGKV1D-39	P04432	117 aa		11.32	□□□□□ -0.6
LMNA-223	ENST00000515459	KCTD21	Q4G0X4	260 aa		11.32	□□□□□ -0.6
LMNA-223	ENST00000515459	SPINK9	Q5DT21	86 aa		11.32	□□□□□ -0.6
LMNA-223	ENST00000515459	NARS2	Q96I59	477 aa	Known RBP	11.32	□□□□□ -0.6
LMNA-223	ENST00000515459	SCRT1	Q9BWW7	348 aa		11.32	□□□□□ -0.6
LMNA-223	ENST00000515459	C1QTNF4	Q9BXJ3	329 aa		11.32	□□□□□ -0.6
LMNA-223	ENST00000515459	DNAH17	Q9UFH2	4485 aa		11.32	□□□□□ -0.6
LMNA-223	ENST00000515459	CORT	O00230	105 aa		11.31	□□□□□ -0.6
LMNA-223	ENST00000515459	IFNA10	P01566	189 aa		11.31	□□□□□ -0.6
LMNA-223	ENST00000515459	HRH1	P35367	487 aa		11.31	□□□□□ -0.6
LMNA-223	ENST00000515459	EIF2B2	P49770	351 aa	Known RBP	11.31	□□□□□ -0.6
LMNA-223	ENST00000515459	PPP5C	P53041	499 aa		11.31	□□□□□ -0.6
LMNA-223	ENST00000515459	NUTF2	P61970	127 aa	Known RBP	11.31	□□□□□ -0.6
LMNA-223	ENST00000515459	TMEM230	Q96A57	120 aa		11.31	□□□□□ -0.6
LMNA-223	ENST00000515459	RAB40C	Q96S21	281 aa		11.31	□□□□□ -0.6
LMNA-223	ENST00000515459	KRTAP4-5	Q9BYR2	181 aa		11.31	□□□□□ -0.6
LMNA-223	ENST00000515459	RAB26	Q9ULW5	256 aa		11.31	□□□□□ -0.6
LMNA-223	ENST00000515459	INS-IGF2	F8WCM5	200 aa		11.3	□□□□□ -0.6
LMNA-223	ENST00000515459	CLN5	O75503	358 aa		11.3	□□□□□ -0.6
LMNA-223	ENST00000515459	SCGB2A1	O75556	95 aa		11.3	□□□□□ -0.6
LMNA-223	ENST00000515459	IFNA21	P01568	189 aa		11.3	□□□□□ -0.6
LMNA-223	ENST00000515459	IFNA17	P01571	189 aa		11.3	□□□□□ -0.6
LMNA-223	ENST00000515459	SUB1	P53999	127 aa	Known RBP eCLIP	11.3	□□□□□ -0.6
LMNA-223	ENST00000515459	TSPAN5	P62079	268 aa		11.3	□□□□□ -0.6
LMNA-223	ENST00000515459	DHRS2	Q13268	280 aa		11.3	□□□□□ -0.6
LMNA-223	ENST00000515459	PSMG4	Q5JS54	123 aa		11.3	□□□□□ -0.6
LMNA-223	ENST00000515459	UBE2NL	Q5JXB2	153 aa		11.3	□□□□□ -0.6
LMNA-223	ENST00000515459	TMEM69	Q5SWH9	247 aa		11.3	□□□□□ -0.6
LMNA-223	ENST00000515459	LYSMD2	Q8IV50	215 aa		11.3	□□□□□ -0.6
LMNA-223	ENST00000515459	UBE2DNL	Q8IWF7	75 aa		11.3	□□□□□ -0.6
LMNA-223	ENST00000515459	SLC35G3	Q8N808	338 aa		11.3	□□□□□ -0.6
LMNA-223	ENST00000515459	PKD1	P98161	4303 aa		11.3	□□□□□ -0.6
LMNA-223	ENST00000515459	HELT	A6NFD8	242 aa		11.29	□□□□□ -0.6
LMNA-223	ENST00000515459	HLA-DMA	P28067	261 aa		11.29	□□□□□ -0.6
LMNA-223	ENST00000515459	PRSS3	P35030	304 aa		11.29	□□□□□ -0.6
LMNA-223	ENST00000515459	OPRK1	P41145	380 aa		11.29	□□□□□ -0.6
LMNA-223	ENST00000515459	AP2S1	P53680	142 aa	Predicted RBP	11.29	□□□□□ -0.6
LMNA-223	ENST00000515459	TAS2R20	P59543	309 aa		11.29	□□□□□ -0.6
LMNA-223	ENST00000515459	IZUMO4	Q1ZYL8	232 aa		11.29	□□□□□ -0.6
LMNA-223	ENST00000515459	OR4X1	Q8NH49	305 aa		11.29	□□□□□ -0.6
LMNA-223	ENST00000515459	IGLV2-18	A0A075B6J9	118 aa		11.28	□□□□□ -0.6
LMNA-223	ENST00000515459	CD74	P04233	296 aa		11.28	□□□□□ -0.6
LMNA-223	ENST00000515459	RNASE2	P10153	161 aa	Known RBP	11.28	□□□□□ -0.6
LMNA-223	ENST00000515459	SOHLH1	Q5JUK2	328 aa		11.28	□□□□□ -0.6
LMNA-223	ENST00000515459		Q6ZR54	194 aa		11.28	□□□□□ -0.6
LMNA-223	ENST00000515459	ZNF575	Q86XF7	245 aa		11.28	□□□□□ -0.6
LMNA-223	ENST00000515459	CROCCP3	Q8IVE0	287 aa		11.28	□□□□□ -0.6
LMNA-223	ENST00000515459	PDCD10	Q9BUL8	212 aa		11.28	□□□□□ -0.6
LMNA-223	ENST00000515459	FNDC4	Q9H6D8	234 aa	Predicted RBP	11.28	□□□□□ -0.6
LMNA-223	ENST00000515459	MRPL36	Q9P0J6	103 aa	Known RBP	11.28	□□□□□ -0.6
LMNA-223	ENST00000515459	XCL2	Q9UBD3	114 aa		11.28	□□□□□ -0.6
LMNA-223	ENST00000515459	TRAV30	A0A087WSZ9	112 aa		11.27	□□□□□ -0.61
LMNA-223	ENST00000515459	SPART-AS1	P0CW21	52 aa		11.27	□□□□□ -0.61
LMNA-223	ENST00000515459	UCP3	P55916	312 aa		11.27	□□□□□ -0.61
LMNA-223	ENST00000515459	SNRPD3	P62318	126 aa	Known RBP	11.27	□□□□□ -0.61
LMNA-223	ENST00000515459		Q6ZRM9	215 aa		11.27	□□□□□ -0.61
LMNA-223	ENST00000515459	SAMD12	Q8N8I0	201 aa		11.27	□□□□□ -0.61
LMNA-223	ENST00000515459	DNAH11	Q96DT5	4516 aa		11.26	□□□□□ -0.61
LMNA-223	ENST00000515459		A0A0B4J293	547 aa		11.26	□□□□□ -0.61
LMNA-223	ENST00000515459	IGKV1-17	P01599	117 aa		11.26	□□□□□ -0.61
LMNA-223	ENST00000515459	ETV6	P41212	452 aa		11.26	□□□□□ -0.61
LMNA-223	ENST00000515459	RPL5	P46777	297 aa	Known RBP	11.26	□□□□□ -0.61
LMNA-223	ENST00000515459	HOXA1	P49639	335 aa	Predicted RBP	11.26	□□□□□ -0.61
LMNA-223	ENST00000515459	AKR1C2	P52895	323 aa		11.26	□□□□□ -0.61
LMNA-223	ENST00000515459	MLANA	Q16655	118 aa		11.26	□□□□□ -0.61
LMNA-223	ENST00000515459	TIGIT	Q495A1	244 aa		11.26	□□□□□ -0.61
LMNA-223	ENST00000515459	C16orf54	Q6UWD8	224 aa		11.26	□□□□□ -0.61
LMNA-223	ENST00000515459	GLMP	Q8WWB7	406 aa		11.26	□□□□□ -0.61
LMNA-223	ENST00000515459	FAM210B	Q96KR6	192 aa		11.26	□□□□□ -0.61
LMNA-223	ENST00000515459	NEU1	Q99519	415 aa		11.26	□□□□□ -0.61
LMNA-223	ENST00000515459	ENY2	Q9NPA8	101 aa		11.26	□□□□□ -0.61
LMNA-223	ENST00000515459		U3KQE9	123 aa		11.26	□□□□□ -0.61
LMNA-223	ENST00000515459	TMEM189	A5PLL7	270 aa		11.25	□□□□□ -0.61
LMNA-223	ENST00000515459	IGKV1-5	P01602	117 aa		11.25	□□□□□ -0.61
LMNA-223	ENST00000515459	HNRNPC	P07910	306 aa	Known RBP eCLIP	11.25	□□□□□ -0.61
LMNA-223	ENST00000515459	EMP1	P54849	157 aa		11.25	□□□□□ -0.61
LMNA-223	ENST00000515459	ZNF705A	Q6ZN79	300 aa	Predicted RBP	11.25	□□□□□ -0.61
LMNA-223	ENST00000515459	GPX8	Q8TED1	209 aa		11.25	□□□□□ -0.61
LMNA-223	ENST00000515459	PLA2G2E	Q9NZK7	142 aa		11.25	□□□□□ -0.61
LMNA-223	ENST00000515459	DYNC1H1	Q14204	4646 aa	Known RBP	11.24	□□□□□ -0.61
LMNA-223	ENST00000515459	SMIM9	A6NGZ8	99 aa		11.24	□□□□□ -0.61
LMNA-223	ENST00000515459	FAM90A26	D6RGX4	464 aa		11.24	□□□□□ -0.61
LMNA-223	ENST00000515459		H3BMM0	161 aa		11.24	□□□□□ -0.61
LMNA-223	ENST00000515459	ATG12	O94817	140 aa		11.24	□□□□□ -0.61
LMNA-223	ENST00000515459		P0C879	139 aa		11.24	□□□□□ -0.61
LMNA-223	ENST00000515459	RNF212	Q495C1	297 aa		11.24	□□□□□ -0.61
LMNA-223	ENST00000515459		Q8WTZ3	238 aa		11.24	□□□□□ -0.61
LMNA-223	ENST00000515459	YTHDF1	Q9BYJ9	559 aa	Known RBP	11.24	□□□□□ -0.61
LMNA-223	ENST00000515459	SEPSECS	Q9HD40	501 aa	Known RBP	11.24	□□□□□ -0.61
LMNA-223	ENST00000515459	ZNF705F	A8MVS1	300 aa	Predicted RBP	11.23	□□□□□ -0.61
LMNA-223	ENST00000515459	ZNF705D	P0CH99	300 aa	Predicted RBP	11.23	□□□□□ -0.61
LMNA-223	ENST00000515459	ZNF705B	P0CI00	300 aa	Predicted RBP	11.23	□□□□□ -0.61
LMNA-223	ENST00000515459	PGAM2	P15259	253 aa		11.23	□□□□□ -0.61

Retrieved 100 of 20,778 RNA–protein pairs in 49.4 ms