RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 C8orf46Q8TAG6 207 aa4.39□□□□□ -1.71
SYNE1-220ENST00000471834 GATAD1Q8WUU5 269 aa4.39□□□□□ -1.71
SYNE1-220ENST00000471834 ZNF488Q96MN9 340 aa4.39□□□□□ -1.71
SYNE1-220ENST00000471834 AKIRIN1Q9H9L7 192 aaPredicted RBP4.39□□□□□ -1.71
SYNE1-220ENST00000471834 TEX50A0A1B0GTY4 177 aa4.39□□□□□ -1.71
SYNE1-220ENST00000471834 PRSS47A8MTI9 375 aa4.39□□□□□ -1.71
SYNE1-220ENST00000471834 TRAT1Q6PIZ9 186 aa4.39□□□□□ -1.71
SYNE1-220ENST00000471834 Q6ZN92 141 aa4.39□□□□□ -1.71
SYNE1-220ENST00000471834 WDR86Q86TI4 376 aa4.39□□□□□ -1.71
SYNE1-220ENST00000471834 SLC25A40Q8TBP6 338 aa4.39□□□□□ -1.71
SYNE1-220ENST00000471834 DTD1Q8TEA8 209 aa4.39□□□□□ -1.71
SYNE1-220ENST00000471834 SLC25A33Q9BSK2 321 aa4.39□□□□□ -1.71
SYNE1-220ENST00000471834 USF3Q68DE3 2245 aa4.38□□□□□ -1.71
SYNE1-220ENST00000471834 PSG5Q15238 335 aa4.38□□□□□ -1.71
SYNE1-220ENST00000471834 C2orf83Q53S99 150 aa4.38□□□□□ -1.71
SYNE1-220ENST00000471834 ZNF493Q6ZR52 646 aa4.38□□□□□ -1.71
SYNE1-220ENST00000471834 PRSS3P2Q8NHM4 247 aa4.38□□□□□ -1.71
SYNE1-220ENST00000471834 FGFBP3Q8TAT2 258 aa4.38□□□□□ -1.71
SYNE1-220ENST00000471834 CNFNQ9BYD5 112 aa4.38□□□□□ -1.71
SYNE1-220ENST00000471834 WASHC3Q9Y3C0 194 aa4.38□□□□□ -1.71
SYNE1-220ENST00000471834 MSRB2Q9Y3D2 182 aa4.38□□□□□ -1.71
SYNE1-220ENST00000471834 OR51B2Q9Y5P1 312 aa4.38□□□□□ -1.71
SYNE1-220ENST00000471834 DOCK9Q9BZ29 2069 aa4.38□□□□□ -1.71
SYNE1-220ENST00000471834 A0A096LNJ9 63 aa4.38□□□□□ -1.71
SYNE1-220ENST00000471834 A0A1W2PS18 150 aa4.38□□□□□ -1.71
SYNE1-220ENST00000471834 NEGR1Q7Z3B1 354 aa4.38□□□□□ -1.71
SYNE1-220ENST00000471834 COQ2Q96H96 371 aa4.38□□□□□ -1.71
SYNE1-220ENST00000471834 ZNF714Q96N38 554 aa4.38□□□□□ -1.71
SYNE1-220ENST00000471834 MS4A6AQ9H2W1 248 aa4.38□□□□□ -1.71
SYNE1-220ENST00000471834 C12orf77C9JDV5 145 aa4.38□□□□□ -1.71
SYNE1-220ENST00000471834 SIVA1O15304 175 aa4.38□□□□□ -1.71
SYNE1-220ENST00000471834 COX6A1P12074 109 aa4.38□□□□□ -1.71
SYNE1-220ENST00000471834 EBLN2Q6P2I7 272 aa4.38□□□□□ -1.71
SYNE1-220ENST00000471834 hADV38S2A0JD32 116 aa4.38□□□□□ -1.71
SYNE1-220ENST00000471834 ECSCRQ19T08 205 aa4.38□□□□□ -1.71
SYNE1-220ENST00000471834 SLC25A45Q8N413 288 aa4.38□□□□□ -1.71
SYNE1-220ENST00000471834 CHRDL1Q9BU40 450 aa4.38□□□□□ -1.71
SYNE1-220ENST00000471834 CCL3P10147 92 aa4.38□□□□□ -1.71
SYNE1-220ENST00000471834 SCGB1A1P11684 91 aa4.38□□□□□ -1.71
SYNE1-220ENST00000471834 COL8A2P25067 703 aa4.38□□□□□ -1.71
SYNE1-220ENST00000471834 KLHDC1Q8N7A1 406 aa4.38□□□□□ -1.71
SYNE1-220ENST00000471834 RASL11BQ9BPW5 248 aa4.38□□□□□ -1.71
SYNE1-220ENST00000471834 C11orf94C9JXX5 98 aa4.37□□□□□ -1.71
SYNE1-220ENST00000471834 IGHV3-23P01764 117 aa4.37□□□□□ -1.71
SYNE1-220ENST00000471834 RNASE1P07998 156 aaKnown RBP4.37□□□□□ -1.71
SYNE1-220ENST00000471834 RAB9AP51151 201 aa4.37□□□□□ -1.71
SYNE1-220ENST00000471834 RPL30P62888 115 aaKnown RBP4.37□□□□□ -1.71
SYNE1-220ENST00000471834 SRSF1Q07955 248 aaKnown RBP eCLIP4.37□□□□□ -1.71
SYNE1-220ENST00000471834 FAM168AQ92567 244 aa4.37□□□□□ -1.71
SYNE1-220ENST00000471834 TMEM14BQ9NUH8 114 aa4.37□□□□□ -1.71
SYNE1-220ENST00000471834 TMSB15BA0A087X1C1 80 aa4.37□□□□□ -1.71
SYNE1-220ENST00000471834 A0A1W2PQM1 296 aa4.37□□□□□ -1.71
SYNE1-220ENST00000471834 RAB7AP51149 207 aa4.37□□□□□ -1.71
SYNE1-220ENST00000471834 C10orf113Q5VZT2 155 aa4.37□□□□□ -1.71
SYNE1-220ENST00000471834 BOD1L2Q8IYS8 172 aa4.37□□□□□ -1.71
SYNE1-220ENST00000471834 SAP30LQ9HAJ7 183 aa4.37□□□□□ -1.71
SYNE1-220ENST00000471834 ORM1P02763 201 aa4.37□□□□□ -1.71
SYNE1-220ENST00000471834 CD69Q07108 199 aa4.37□□□□□ -1.71
SYNE1-220ENST00000471834 FAM162BQ5T6X4 162 aa4.37□□□□□ -1.71
SYNE1-220ENST00000471834 MDP1Q86V88 176 aa4.37□□□□□ -1.71
SYNE1-220ENST00000471834 CACNG8Q8WXS5 425 aa4.37□□□□□ -1.71
SYNE1-220ENST00000471834 NPVFQ9HCQ7 196 aa4.37□□□□□ -1.71
SYNE1-220ENST00000471834 URB1O60287 2271 aaKnown RBP4.37□□□□□ -1.71
SYNE1-220ENST00000471834 H7C2G1 150 aa4.37□□□□□ -1.71
SYNE1-220ENST00000471834 IGKV3-15P01624 115 aa4.37□□□□□ -1.71
SYNE1-220ENST00000471834 GNLYP22749 145 aa4.37□□□□□ -1.71
SYNE1-220ENST00000471834 LOXL3P58215 753 aa4.37□□□□□ -1.71
SYNE1-220ENST00000471834 RPL31P62899 125 aaKnown RBP4.37□□□□□ -1.71
SYNE1-220ENST00000471834 OR52L2PQ8NGH6 319 aa4.37□□□□□ -1.71
SYNE1-220ENST00000471834 KCNS1Q96KK3 526 aa4.37□□□□□ -1.71
SYNE1-220ENST00000471834 ARID1BQ8NFD5 2236 aaPredicted RBP4.37□□□□□ -1.71
SYNE1-220ENST00000471834 MPDZO75970 2070 aa4.37□□□□□ -1.71
SYNE1-220ENST00000471834 IGKV1OR2-108A0A075B7D4 117 aa4.37□□□□□ -1.71
SYNE1-220ENST00000471834 PSCAO43653 123 aa4.37□□□□□ -1.71
SYNE1-220ENST00000471834 LGALS7P47929 136 aa4.37□□□□□ -1.71
SYNE1-220ENST00000471834 PIP4P1Q86T03 277 aa4.37□□□□□ -1.71
SYNE1-220ENST00000471834 C5orf17Q8NAS9 161 aa4.37□□□□□ -1.71
SYNE1-220ENST00000471834 VN1R17PQ8TDU5 208 aa4.37□□□□□ -1.71
SYNE1-220ENST00000471834 GPHA2Q96T91 129 aa4.37□□□□□ -1.71
SYNE1-220ENST00000471834 HIGD1BQ9P298 99 aa4.37□□□□□ -1.71
SYNE1-220ENST00000471834 MYO7AQ13402 2215 aa4.37□□□□□ -1.71
SYNE1-220ENST00000471834 ARHGEF17Q96PE2 2063 aaPredicted RBP4.37□□□□□ -1.71
SYNE1-220ENST00000471834 IQCF6A8MYZ5 107 aa4.37□□□□□ -1.71
SYNE1-220ENST00000471834 UBE2L6O14933 153 aa4.37□□□□□ -1.71
SYNE1-220ENST00000471834 ZNF207O43670 478 aaKnown RBP4.37□□□□□ -1.71
SYNE1-220ENST00000471834 CCL4P13236 92 aa4.37□□□□□ -1.71
SYNE1-220ENST00000471834 CRISP2P16562 243 aa4.37□□□□□ -1.71
SYNE1-220ENST00000471834 FOXA2Q9Y261 457 aaPredicted RBP4.37□□□□□ -1.71
SYNE1-220ENST00000471834 IGHV1-45A0A0A0MS14 117 aa4.36□□□□□ -1.71
SYNE1-220ENST00000471834 IER3P46695 156 aa4.36□□□□□ -1.71
SYNE1-220ENST00000471834 NSUN5P1Q3KNT7 163 aa4.36□□□□□ -1.71
SYNE1-220ENST00000471834 LEMD1Q68G75 181 aa4.36□□□□□ -1.71
SYNE1-220ENST00000471834 Q71RC1 249 aaPredicted RBP4.36□□□□□ -1.71
SYNE1-220ENST00000471834 PHLDA1Q8WV24 401 aaPredicted RBP4.36□□□□□ -1.71
SYNE1-220ENST00000471834 HILPDAQ9Y5L2 63 aa4.36□□□□□ -1.71
SYNE1-220ENST00000471834 KIAA0100Q14667 2235 aaKnown RBP4.36□□□□□ -1.71
SYNE1-220ENST00000471834 TNFRSF13BO14836 293 aaPredicted RBP4.36□□□□□ -1.71
SYNE1-220ENST00000471834 PAGE4O60829 102 aa4.36□□□□□ -1.71
SYNE1-220ENST00000471834 CA2P00918 260 aa4.36□□□□□ -1.71
SYNE1-220ENST00000471834 GCHFRP30047 84 aa4.36□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 136.3 ms