RNA–Protein interactions for RNA: ENST00000450966.5

USP40-208, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene USP40, Length 5,616 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-208ENST00000450966 WFDC6Q9BQY6 131 aa11.17□□□□□ -0.62
USP40-208ENST00000450966 C9JAW5 83 aa11.17□□□□□ -0.62
USP40-208ENST00000450966 HIST1H4AP62805 103 aaKnown RBP11.17□□□□□ -0.62
USP40-208ENST00000450966 OR9G1Q8NH87 305 aa11.17□□□□□ -0.62
USP40-208ENST00000450966 PDLIM4P50479 330 aa11.17□□□□□ -0.62
USP40-208ENST00000450966 DRAM1Q8N682 238 aa11.17□□□□□ -0.62
USP40-208ENST00000450966 IGLL1P15814 213 aa11.16□□□□□ -0.62
USP40-208ENST00000450966 PEBP1P30086 187 aaKnown RBP11.16□□□□□ -0.62
USP40-208ENST00000450966 ASIPP42127 132 aa11.16□□□□□ -0.62
USP40-208ENST00000450966 TMEM258P61165 79 aa11.16□□□□□ -0.62
USP40-208ENST00000450966 RNF115Q9Y4L5 304 aa11.16□□□□□ -0.62
USP40-208ENST00000450966 LINC01549A6NIU2 74 aa11.16□□□□□ -0.62
USP40-208ENST00000450966 TIAF1O95411 115 aa11.16□□□□□ -0.62
USP40-208ENST00000450966 SAXO1Q8IYX7 474 aa11.16□□□□□ -0.62
USP40-208ENST00000450966 BMPERQ8N8U9 685 aa11.16□□□□□ -0.62
USP40-208ENST00000450966 TCF19Q9Y242 345 aa11.16□□□□□ -0.62
USP40-208ENST00000450966 PARP14Q460N5 1801 aa11.16□□□□□ -0.62
USP40-208ENST00000450966 SAP30O75446 220 aa11.16□□□□□ -0.62
USP40-208ENST00000450966 APOBEC3AP31941 199 aaPredicted RBP11.16□□□□□ -0.62
USP40-208ENST00000450966 FBXL15Q9H469 300 aa11.16□□□□□ -0.62
USP40-208ENST00000450966 SLC25A15Q9Y619 301 aa11.16□□□□□ -0.62
USP40-208ENST00000450966 J3QW42 95 aa11.15□□□□□ -0.62
USP40-208ENST00000450966 SIVA1O15304 175 aa11.15□□□□□ -0.62
USP40-208ENST00000450966 YPEL3P61236 119 aaPredicted RBP11.15□□□□□ -0.62
USP40-208ENST00000450966 ZNF146Q15072 292 aa11.15□□□□□ -0.62
USP40-208ENST00000450966 ASPHD2Q6ICH7 369 aa11.15□□□□□ -0.62
USP40-208ENST00000450966 FNDC10F2Z333 226 aa11.15□□□□□ -0.62
USP40-208ENST00000450966 SYNGR3O43761 229 aa11.15□□□□□ -0.62
USP40-208ENST00000450966 TRAV12-3A0A0B4J271 114 aa11.15□□□□□ -0.62
USP40-208ENST00000450966 TRAV21A0A0B4J279 112 aa11.15□□□□□ -0.62
USP40-208ENST00000450966 PROB1E7EW31 1015 aa11.15□□□□□ -0.62
USP40-208ENST00000450966 PLAUP00749 431 aa11.15□□□□□ -0.62
USP40-208ENST00000450966 TRIP11Q15643 1979 aa11.15□□□□□ -0.62
USP40-208ENST00000450966 M0R2P5 195 aa11.15□□□□□ -0.62
USP40-208ENST00000450966 OR2H2O95918 312 aa11.15□□□□□ -0.62
USP40-208ENST00000450966 GTSCR1Q86UQ5 136 aa11.15□□□□□ -0.62
USP40-208ENST00000450966 PHLDA3Q9Y5J5 127 aa11.15□□□□□ -0.62
USP40-208ENST00000450966 TEX48A0A1B0GUV7 120 aa11.15□□□□□ -0.63
USP40-208ENST00000450966 TMEM30BQ3MIR4 351 aa11.15□□□□□ -0.63
USP40-208ENST00000450966 MORN2Q502X0 79 aa11.15□□□□□ -0.63
USP40-208ENST00000450966 MDP1Q86V88 176 aa11.15□□□□□ -0.63
USP40-208ENST00000450966 UCN2Q96RP3 112 aa11.15□□□□□ -0.63
USP40-208ENST00000450966 FOCADQ5VW36 1801 aa11.15□□□□□ -0.63
USP40-208ENST00000450966 SCN1AP35498 2009 aa11.14□□□□□ -0.63
USP40-208ENST00000450966 GHRHP01286 108 aa11.14□□□□□ -0.63
USP40-208ENST00000450966 PRSS12P56730 875 aa11.14□□□□□ -0.63
USP40-208ENST00000450966 SRSF1Q07955 248 aaKnown RBP eCLIP11.14□□□□□ -0.63
USP40-208ENST00000450966 TMEM190Q8WZ59 177 aa11.14□□□□□ -0.63
USP40-208ENST00000450966 TOMM40O96008 361 aa11.14□□□□□ -0.63
USP40-208ENST00000450966 COX6A1P12074 109 aa11.14□□□□□ -0.63
USP40-208ENST00000450966 IGFBP3P17936 291 aaPredicted RBP11.14□□□□□ -0.63
USP40-208ENST00000450966 ZNF319Q9P2F9 582 aa11.14□□□□□ -0.63
USP40-208ENST00000450966 ZAR1Q86SH2 424 aa11.14□□□□□ -0.63
USP40-208ENST00000450966 SIGLEC12Q96PQ1 595 aa11.14□□□□□ -0.63
USP40-208ENST00000450966 SRSF8Q9BRL6 282 aaKnown RBP11.14□□□□□ -0.63
USP40-208ENST00000450966 TDRD15B5MCY1 1934 aaKnown RBP11.14□□□□□ -0.63
USP40-208ENST00000450966 IGHV1-24A0A0C4DH33 117 aa11.14□□□□□ -0.63
USP40-208ENST00000450966 ECSCRQ19T08 205 aa11.14□□□□□ -0.63
USP40-208ENST00000450966 NBEAP1P0C6P0 100 aa11.13□□□□□ -0.63
USP40-208ENST00000450966 IL11P20809 199 aa11.13□□□□□ -0.63
USP40-208ENST00000450966 RAX2Q96IS3 184 aa11.13□□□□□ -0.63
USP40-208ENST00000450966 J3QRE1 110 aa11.13□□□□□ -0.63
USP40-208ENST00000450966 HTN1P15515 57 aa11.13□□□□□ -0.63
USP40-208ENST00000450966 GPHA2Q96T91 129 aa11.13□□□□□ -0.63
USP40-208ENST00000450966 NPFFR1Q9GZQ6 430 aa11.13□□□□□ -0.63
USP40-208ENST00000450966 VSIRQ9H7M9 311 aa11.13□□□□□ -0.63
USP40-208ENST00000450966 TMEM74BQ9NUR3 256 aa11.13□□□□□ -0.63
USP40-208ENST00000450966 RBMY1BA6NDE4 496 aaKnown RBP11.13□□□□□ -0.63
USP40-208ENST00000450966 RBMY1EA6NEQ0 496 aaKnown RBP11.13□□□□□ -0.63
USP40-208ENST00000450966 CD55P08174 381 aa11.13□□□□□ -0.63
USP40-208ENST00000450966 RBMY1DP0C7P1 496 aaKnown RBP11.13□□□□□ -0.63
USP40-208ENST00000450966 RBMY1A1P0DJD3 496 aaKnown RBP11.13□□□□□ -0.63
USP40-208ENST00000450966 RBMY1CP0DJD4 496 aa11.13□□□□□ -0.63
USP40-208ENST00000450966 RBX1P62877 108 aa11.13□□□□□ -0.63
USP40-208ENST00000450966 ORMDL2Q53FV1 153 aa11.13□□□□□ -0.63
USP40-208ENST00000450966 SPAG17Q6Q759 2223 aa11.13□□□□□ -0.63
USP40-208ENST00000450966 CENPVL1A0A0U1RR11 272 aa11.13□□□□□ -0.63
USP40-208ENST00000450966 SPSB3Q6PJ21 355 aa11.13□□□□□ -0.63
USP40-208ENST00000450966 SLC25A48Q6ZT89 311 aaKnown RBP11.12□□□□□ -0.63
USP40-208ENST00000450966 C8orf86Q6ZUL3 223 aa11.12□□□□□ -0.63
USP40-208ENST00000450966 ABHD12Q8N2K0 398 aa11.12□□□□□ -0.63
USP40-208ENST00000450966 IGKV3-7A0A075B6H7 116 aa11.12□□□□□ -0.63
USP40-208ENST00000450966 CRYBA2P53672 197 aa11.12□□□□□ -0.63
USP40-208ENST00000450966 PCSK4Q6UW60 755 aa11.12□□□□□ -0.63
USP40-208ENST00000450966 GGTLC3B5MD39 225 aa11.12□□□□□ -0.63
USP40-208ENST00000450966 TAL2Q16559 108 aa11.12□□□□□ -0.63
USP40-208ENST00000450966 COL4A1P02462 1669 aa11.12□□□□□ -0.63
USP40-208ENST00000450966 MIR17HGQ75NE6 70 aa11.12□□□□□ -0.63
USP40-208ENST00000450966 HRKO00198 91 aa11.12□□□□□ -0.63
USP40-208ENST00000450966 IGHV3OR15-7A0A075B7D8 119 aa11.11□□□□□ -0.63
USP40-208ENST00000450966 LINC00305Q7Z4B0 112 aa11.11□□□□□ -0.63
USP40-208ENST00000450966 RNF182Q8N6D2 247 aa11.11□□□□□ -0.63
USP40-208ENST00000450966 LOXL3P58215 753 aa11.11□□□□□ -0.63
USP40-208ENST00000450966 PCOLCEQ15113 449 aa11.11□□□□□ -0.63
USP40-208ENST00000450966 UTF1Q5T230 341 aa11.11□□□□□ -0.63
USP40-208ENST00000450966 FAM27BQ5VT28 67 aa11.11□□□□□ -0.63
USP40-208ENST00000450966 ZNF638Q14966 1978 aaKnown RBP11.11□□□□□ -0.63
USP40-208ENST00000450966 TRBV7-9A0A0J9YWB2 115 aa11.11□□□□□ -0.63
USP40-208ENST00000450966 LOC101059948A0A1B0GTJ6 334 aa11.11□□□□□ -0.63
USP40-208ENST00000450966 C22orf46C9J442 243 aa11.11□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms