RNA–Protein interactions for RNA: ENST00000448428.1

PRPF40A-203, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 5

Gene PRPF40A, Length 490 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-203ENST00000448428 NMSQ5H8A3 153 aa9.55□□□□□ -0.88
PRPF40A-203ENST00000448428 LINC00322Q6ZN03 302 aaPredicted RBP9.55□□□□□ -0.88
PRPF40A-203ENST00000448428 RBPMS2Q6ZRY4 209 aaKnown RBP9.55□□□□□ -0.88
PRPF40A-203ENST00000448428 OR10C1Q96KK4 312 aa9.55□□□□□ -0.88
PRPF40A-203ENST00000448428 WFDC10AQ9H1F0 79 aa9.55□□□□□ -0.88
PRPF40A-203ENST00000448428 ZMAT4Q9H898 229 aa9.55□□□□□ -0.88
PRPF40A-203ENST00000448428 MRPL36Q9P0J6 103 aaKnown RBP9.55□□□□□ -0.88
PRPF40A-203ENST00000448428 SMPXQ9UHP9 88 aa9.55□□□□□ -0.88
PRPF40A-203ENST00000448428 RBMY1BA6NDE4 496 aaKnown RBP9.54□□□□□ -0.88
PRPF40A-203ENST00000448428 RBMY1EA6NEQ0 496 aaKnown RBP9.54□□□□□ -0.88
PRPF40A-203ENST00000448428 RBMY1DP0C7P1 496 aaKnown RBP9.54□□□□□ -0.88
PRPF40A-203ENST00000448428 OPRK1P41145 380 aa9.54□□□□□ -0.88
PRPF40A-203ENST00000448428 SRPXP78539 464 aa9.54□□□□□ -0.88
PRPF40A-203ENST00000448428 SMCO1Q147U7 214 aa9.54□□□□□ -0.88
PRPF40A-203ENST00000448428 C2orf83Q53S99 150 aa9.54□□□□□ -0.88
PRPF40A-203ENST00000448428 OR52B4Q8NGK2 314 aa9.54□□□□□ -0.88
PRPF40A-203ENST00000448428 IGHV3-49A0A0A0MS15 119 aa9.53□□□□□ -0.88
PRPF40A-203ENST00000448428 IGHV7-4-1A0A0J9YVY3 117 aa9.53□□□□□ -0.88
PRPF40A-203ENST00000448428 LINC00854A0A1B0GVQ3 168 aa9.53□□□□□ -0.88
PRPF40A-203ENST00000448428 VAMP1P23763 118 aa9.53□□□□□ -0.88
PRPF40A-203ENST00000448428 INPP1P49441 399 aa9.53□□□□□ -0.88
PRPF40A-203ENST00000448428 TNFRSF9Q07011 255 aa9.53□□□□□ -0.88
PRPF40A-203ENST00000448428 PPP1R1AQ13522 171 aa9.53□□□□□ -0.88
PRPF40A-203ENST00000448428 RBMS2Q15434 407 aaKnown RBP9.53□□□□□ -0.88
PRPF40A-203ENST00000448428 ANKRD55Q3KP44 614 aa9.53□□□□□ -0.88
PRPF40A-203ENST00000448428 TRIQKQ629K1 86 aa9.53□□□□□ -0.88
PRPF40A-203ENST00000448428 LAMTOR1Q6IAA8 161 aa9.53□□□□□ -0.88
PRPF40A-203ENST00000448428 TOMM20LQ6UXN7 152 aa9.53□□□□□ -0.88
PRPF40A-203ENST00000448428 SLC16A13Q7RTY0 426 aa9.53□□□□□ -0.88
PRPF40A-203ENST00000448428 TMEM116Q8NCL8 245 aa9.53□□□□□ -0.88
PRPF40A-203ENST00000448428 TMEM170AQ8WVE7 144 aa9.53□□□□□ -0.88
PRPF40A-203ENST00000448428 RHPN1-AS1Q9BWJ2 59 aa9.53□□□□□ -0.88
PRPF40A-203ENST00000448428 HIPK2Q9H2X6 1198 aa9.53□□□□□ -0.88
PRPF40A-203ENST00000448428 SRD5A3Q9H8P0 318 aa9.53□□□□□ -0.88
PRPF40A-203ENST00000448428 HSPB7Q9UBY9 170 aa9.53□□□□□ -0.88
PRPF40A-203ENST00000448428 CACFD1Q9UGQ2 172 aa9.53□□□□□ -0.88
PRPF40A-203ENST00000448428 TRAV14DV4A0A0A6YYC5 116 aa9.52□□□□□ -0.89
PRPF40A-203ENST00000448428 A0A1B0GU03 582 aa9.52□□□□□ -0.89
PRPF40A-203ENST00000448428 NAP1L6A6NFF2 107 aa9.52□□□□□ -0.89
PRPF40A-203ENST00000448428 CHEK1O14757 476 aa9.52□□□□□ -0.89
PRPF40A-203ENST00000448428 TSPAN4O14817 238 aa9.52□□□□□ -0.89
PRPF40A-203ENST00000448428 CLN5O75503 358 aa9.52□□□□□ -0.89
PRPF40A-203ENST00000448428 SFT2D2O95562 160 aa9.52□□□□□ -0.89
PRPF40A-203ENST00000448428 ZNF600Q6ZNG1 722 aa9.52□□□□□ -0.89
PRPF40A-203ENST00000448428 CENPSQ8N2Z9 138 aa9.52□□□□□ -0.89
PRPF40A-203ENST00000448428 LRTM2Q8N967 370 aa9.52□□□□□ -0.89
PRPF40A-203ENST00000448428 SLC24A4Q8NFF2 622 aa9.52□□□□□ -0.89
PRPF40A-203ENST00000448428 OR4X1Q8NH49 305 aa9.52□□□□□ -0.89
PRPF40A-203ENST00000448428 RNF2Q99496 336 aa9.52□□□□□ -0.89
PRPF40A-203ENST00000448428 SPAG8Q99932 426 aaPredicted RBP9.52□□□□□ -0.89
PRPF40A-203ENST00000448428 RBKSQ9H477 322 aa9.52□□□□□ -0.89
PRPF40A-203ENST00000448428 PUS1Q9Y606 427 aaKnown RBP eCLIP9.52□□□□□ -0.89
PRPF40A-203ENST00000448428 IGHV3OR16-13A0A075B7E8 117 aa9.51□□□□□ -0.89
PRPF40A-203ENST00000448428 IGHV3-74A0A0B4J1X5 117 aa9.51□□□□□ -0.89
PRPF40A-203ENST00000448428 PIGBOS1A0A0B4J2F0 54 aa9.51□□□□□ -0.89
PRPF40A-203ENST00000448428 DUXBA0A1W2PPF3 345 aa9.51□□□□□ -0.89
PRPF40A-203ENST00000448428 PITX3O75364 302 aa9.51□□□□□ -0.89
PRPF40A-203ENST00000448428 NDUFB6O95139 128 aa9.51□□□□□ -0.89
PRPF40A-203ENST00000448428 IL7P13232 177 aa9.51□□□□□ -0.89
PRPF40A-203ENST00000448428 PRSS54Q6PEW0 395 aa9.51□□□□□ -0.89
PRPF40A-203ENST00000448428 OR1S1Q8NH92 325 aa9.51□□□□□ -0.89
PRPF40A-203ENST00000448428 RNASEH2CQ8TDP1 164 aaKnown RBP9.51□□□□□ -0.89
PRPF40A-203ENST00000448428 ZFAND3Q9H8U3 227 aa9.51□□□□□ -0.89
PRPF40A-203ENST00000448428 FLVCR2Q9UPI3 526 aa9.51□□□□□ -0.89
PRPF40A-203ENST00000448428 RPS10-NUDT3A0A1W2PQS6 291 aa9.5□□□□□ -0.89
PRPF40A-203ENST00000448428 IFNA10P01566 189 aa9.5□□□□□ -0.89
PRPF40A-203ENST00000448428 IGKV1-17P01599 117 aa9.5□□□□□ -0.89
PRPF40A-203ENST00000448428 APOHP02749 345 aaPredicted RBP9.5□□□□□ -0.89
PRPF40A-203ENST00000448428 NPY1RP25929 384 aa9.5□□□□□ -0.89
PRPF40A-203ENST00000448428 BTCP35070 178 aa9.5□□□□□ -0.89
PRPF40A-203ENST00000448428 TIGITQ495A1 244 aa9.5□□□□□ -0.89
PRPF40A-203ENST00000448428 NOXA1Q86UR1 476 aa9.5□□□□□ -0.89
PRPF40A-203ENST00000448428 LILRB2Q8N423 598 aa9.5□□□□□ -0.89
PRPF40A-203ENST00000448428 DTD1Q8TEA8 209 aa9.5□□□□□ -0.89
PRPF40A-203ENST00000448428 CITED4Q96RK1 184 aa9.5□□□□□ -0.89
PRPF40A-203ENST00000448428 SPATA25Q9BR10 227 aa9.5□□□□□ -0.89
PRPF40A-203ENST00000448428 GINS3Q9BRX5 216 aa9.5□□□□□ -0.89
PRPF40A-203ENST00000448428 UBQLN2Q9UHD9 624 aa9.5□□□□□ -0.89
PRPF40A-203ENST00000448428 U3KQ87 197 aa9.5□□□□□ -0.89
PRPF40A-203ENST00000448428 TRAV30A0A087WSZ9 112 aa9.49□□□□□ -0.89
PRPF40A-203ENST00000448428 C9orf170A2RU37 121 aa9.49□□□□□ -0.89
PRPF40A-203ENST00000448428 HOXB5P09067 269 aa9.49□□□□□ -0.89
PRPF40A-203ENST00000448428 SLC25A4P12235 298 aa9.49□□□□□ -0.89
PRPF40A-203ENST00000448428 SLC25A6P12236 298 aa9.49□□□□□ -0.89
PRPF40A-203ENST00000448428 RND2P52198 227 aa9.49□□□□□ -0.89
PRPF40A-203ENST00000448428 UBE2MP61081 183 aaKnown RBP9.49□□□□□ -0.89
PRPF40A-203ENST00000448428 FAM90A2PQ658T7 463 aa9.49□□□□□ -0.89
PRPF40A-203ENST00000448428 ST8SIA2Q92186 375 aa9.49□□□□□ -0.89
PRPF40A-203ENST00000448428 VSIRQ9H7M9 311 aa9.49□□□□□ -0.89
PRPF40A-203ENST00000448428 TMED3Q9Y3Q3 217 aa9.49□□□□□ -0.89
PRPF40A-203ENST00000448428 IGKV3-7A0A075B6H7 116 aa9.48□□□□□ -0.89
PRPF40A-203ENST00000448428 IGHV3-66A0A0C4DH42 116 aa9.48□□□□□ -0.89
PRPF40A-203ENST00000448428 OR4C46A6NHA9 309 aa9.48□□□□□ -0.89
PRPF40A-203ENST00000448428 CENPXA8MT69 81 aa9.48□□□□□ -0.89
PRPF40A-203ENST00000448428 PLA2G10O15496 165 aa9.48□□□□□ -0.89
PRPF40A-203ENST00000448428 IGLC1P0CG04 106 aa9.48□□□□□ -0.89
PRPF40A-203ENST00000448428 NPPCP23582 126 aa9.48□□□□□ -0.89
PRPF40A-203ENST00000448428 GGNBP1Q5YKI7 109 aa9.48□□□□□ -0.89
PRPF40A-203ENST00000448428 ETFRF1Q6IPR1 90 aa9.48□□□□□ -0.89
PRPF40A-203ENST00000448428 TCF24Q7RTU0 167 aa9.48□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 115.7 ms