RNA–Protein interactions for RNA: ENST00000323701.10

USP39-201, Transcript of ubiquitin specific peptidase 39, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP39, Length 2,177 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-201ENST00000323701 MAP1LC3BQ9GZQ8 125 aa14.6□□□□□ -0.07
USP39-201ENST00000323701 AKAP9Q99996 3911 aa14.6□□□□□ -0.07
USP39-201ENST00000323701 PRRC2AP48634 2157 aaKnown RBP14.6□□□□□ -0.07
USP39-201ENST00000323701 FNDC10F2Z333 226 aa14.6□□□□□ -0.07
USP39-201ENST00000323701 LINC00869P0C866 280 aa14.6□□□□□ -0.07
USP39-201ENST00000323701 KRTAP1-3Q8IUG1 177 aa14.6□□□□□ -0.07
USP39-201ENST00000323701 Q8N9W7 124 aa14.6□□□□□ -0.07
USP39-201ENST00000323701 RAB24Q969Q5 203 aa14.6□□□□□ -0.07
USP39-201ENST00000323701 MISP3Q96FF7 219 aa14.6□□□□□ -0.07
USP39-201ENST00000323701 HECTD1Q9ULT8 2610 aa14.6□□□□□ -0.07
USP39-201ENST00000323701 CR1P17927 2039 aa14.59□□□□□ -0.07
USP39-201ENST00000323701 FBP1P09467 338 aa14.59□□□□□ -0.07
USP39-201ENST00000323701 FAM106CPP0CH98 169 aa14.59□□□□□ -0.07
USP39-201ENST00000323701 Q5PR19 223 aa14.59□□□□□ -0.07
USP39-201ENST00000323701 ASPHD1Q5U4P2 390 aa14.59□□□□□ -0.07
USP39-201ENST00000323701 PIFOQ8TCI5 191 aa14.59□□□□□ -0.07
USP39-201ENST00000323701 RNASEH2CQ8TDP1 164 aaKnown RBP14.59□□□□□ -0.07
USP39-201ENST00000323701 RBFOX3A6NFN3 312 aa14.58□□□□□ -0.07
USP39-201ENST00000323701 SH2D7A6NKC9 451 aaPredicted RBP14.58□□□□□ -0.07
USP39-201ENST00000323701 OR10J1P30954 320 aa14.58□□□□□ -0.07
USP39-201ENST00000323701 GPX4P36969 197 aaPredicted RBP14.58□□□□□ -0.07
USP39-201ENST00000323701 SUB1P53999 127 aaKnown RBP eCLIP14.58□□□□□ -0.076e-9■■■□□ 18
USP39-201ENST00000323701 PRR20EP86478 221 aa14.58□□□□□ -0.07
USP39-201ENST00000323701 PRR20CP86479 221 aa14.58□□□□□ -0.07
USP39-201ENST00000323701 PRR20DP86480 221 aa14.58□□□□□ -0.07
USP39-201ENST00000323701 PRR20BP86481 221 aa14.58□□□□□ -0.07
USP39-201ENST00000323701 PRR20AP86496 221 aa14.58□□□□□ -0.07
USP39-201ENST00000323701 LFNGQ8NES3 379 aa14.58□□□□□ -0.07
USP39-201ENST00000323701 CACNG8Q8WXS5 425 aa14.58□□□□□ -0.07
USP39-201ENST00000323701 NPIPB3Q92617 1050 aa14.58□□□□□ -0.07
USP39-201ENST00000323701 SLC39A9Q9NUM3 307 aa14.58□□□□□ -0.07
USP39-201ENST00000323701 BEX4Q9NWD9 120 aaPredicted RBP14.58□□□□□ -0.07
USP39-201ENST00000323701 SLC45A2Q9UMX9 530 aa14.58□□□□□ -0.07
USP39-201ENST00000323701 F11RQ9Y624 299 aaKnown RBP14.58□□□□□ -0.07
USP39-201ENST00000323701 FASNP49327 2511 aaKnown RBP14.58□□□□□ -0.08
USP39-201ENST00000323701 AKR1C3P42330 323 aa14.58□□□□□ -0.08
USP39-201ENST00000323701 OR1P1Q8NH06 330 aa14.58□□□□□ -0.08
USP39-201ENST00000323701 RXFP4Q8TDU9 374 aa14.58□□□□□ -0.08
USP39-201ENST00000323701 SLC25A33Q9BSK2 321 aa14.58□□□□□ -0.08
USP39-201ENST00000323701 GNG13Q9P2W3 67 aa14.58□□□□□ -0.08
USP39-201ENST00000323701 IGKV1D-37A0A075B6S9 117 aa14.57□□□□□ -0.08
USP39-201ENST00000323701 BTBD17A6NE02 478 aa14.57□□□□□ -0.08
USP39-201ENST00000323701 MBP02144 154 aa14.57□□□□□ -0.08
USP39-201ENST00000323701 ICAM4Q14773 271 aa14.57□□□□□ -0.08
USP39-201ENST00000323701 AKIRIN2Q53H80 203 aa14.57□□□□□ -0.08
USP39-201ENST00000323701 SPATA31B1PQ5VZV4 182 aa14.57□□□□□ -0.08
USP39-201ENST00000323701 TMEM219Q86XT9 240 aa14.57□□□□□ -0.08
USP39-201ENST00000323701 ABHD5Q8WTS1 349 aa14.57□□□□□ -0.08
USP39-201ENST00000323701 HSPB9Q9BQS6 159 aa14.57□□□□□ -0.08
USP39-201ENST00000323701 TLN2Q9Y4G6 2542 aa14.57□□□□□ -0.08
USP39-201ENST00000323701 CTXND1A0A1B0GTU2 59 aa14.57□□□□□ -0.08
USP39-201ENST00000323701 EGR2P11161 476 aaPredicted RBP14.57□□□□□ -0.08
USP39-201ENST00000323701 RPL29P47914 159 aaKnown RBP14.57□□□□□ -0.08
USP39-201ENST00000323701 ACOT6Q3I5F7 207 aaPredicted RBP14.57□□□□□ -0.08
USP39-201ENST00000323701 ZNF562Q6V9R5 426 aa14.57□□□□□ -0.08
USP39-201ENST00000323701 GATAD1Q8WUU5 269 aa14.57□□□□□ -0.08
USP39-201ENST00000323701 WNT10AQ9GZT5 417 aa14.57□□□□□ -0.08
USP39-201ENST00000323701 SEPSECSQ9HD40 501 aaKnown RBP14.57□□□□□ -0.08
USP39-201ENST00000323701 IGHV7-81A0A0B4J1V7 117 aa14.56□□□□□ -0.08
USP39-201ENST00000323701 ZFP92A6NM28 416 aa14.56□□□□□ -0.08
USP39-201ENST00000323701 HBE1P02100 147 aa14.56□□□□□ -0.08
USP39-201ENST00000323701 CRYGCP07315 174 aa14.56□□□□□ -0.08
USP39-201ENST00000323701 BRS3P32247 399 aa14.56□□□□□ -0.08
USP39-201ENST00000323701 RND2P52198 227 aa14.56□□□□□ -0.08
USP39-201ENST00000323701 ZNF90Q03938 601 aa14.56□□□□□ -0.08
USP39-201ENST00000323701 LINC01356Q8N9X3 169 aa14.56□□□□□ -0.08
USP39-201ENST00000323701 ACTR3CQ9C0K3 210 aaPredicted RBP14.56□□□□□ -0.08
USP39-201ENST00000323701 COLCA2A8K830 154 aa14.56□□□□□ -0.08
USP39-201ENST00000323701 SEC14L6B5MCN3 397 aa14.56□□□□□ -0.08
USP39-201ENST00000323701 CRYBA1P05813 215 aa14.56□□□□□ -0.08
USP39-201ENST00000323701 CDC34P49427 236 aaPredicted RBP14.56□□□□□ -0.08
USP39-201ENST00000323701 SLC35E1Q96K37 410 aa14.56□□□□□ -0.08
USP39-201ENST00000323701 GSX1Q9H4S2 264 aaPredicted RBP14.56□□□□□ -0.08
USP39-201ENST00000323701 TRAV20A0A0B4J274 112 aa14.55□□□□□ -0.08
USP39-201ENST00000323701 LINC01548A6NM66 108 aa14.55□□□□□ -0.08
USP39-201ENST00000323701 MT-CO2P00403 227 aa14.55□□□□□ -0.08
USP39-201ENST00000323701 PEA15Q15121 130 aa14.55□□□□□ -0.08
USP39-201ENST00000323701 ARPC1AQ92747 370 aa14.55□□□□□ -0.08
USP39-201ENST00000323701 PBDC1Q9BVG4 233 aa14.55□□□□□ -0.08
USP39-201ENST00000323701 CYB5BO43169 146 aa14.54□□□□□ -0.08
USP39-201ENST00000323701 TGFAP01135 160 aa14.54□□□□□ -0.08
USP39-201ENST00000323701 LOXL1Q08397 574 aaPredicted RBP14.54□□□□□ -0.08
USP39-201ENST00000323701 LRRC75A-AS1Q8N1F1 130 aa14.54□□□□□ -0.08
USP39-201ENST00000323701 Q96MF0 132 aa14.54□□□□□ -0.08
USP39-201ENST00000323701 FLNAP21333 2647 aaKnown RBP14.54□□□□□ -0.08
USP39-201ENST00000323701 RAB31Q13636 194 aa14.54□□□□□ -0.08
USP39-201ENST00000323701 ZNF506Q5JVG8 444 aa14.54□□□□□ -0.08
USP39-201ENST00000323701 MRPL41Q8IXM3 137 aaKnown RBP14.54□□□□□ -0.08
USP39-201ENST00000323701 LOC102723971A0A1B0GUV8 181 aa14.53□□□□□ -0.08
USP39-201ENST00000323701 I3L2K1 104 aa14.53□□□□□ -0.08
USP39-201ENST00000323701 AWAT1Q58HT5 328 aa14.53□□□□□ -0.08
USP39-201ENST00000323701 AMY1AP04745 511 aa14.53□□□□□ -0.08
USP39-201ENST00000323701 IGHV4-31P0DP07 118 aa14.53□□□□□ -0.08
USP39-201ENST00000323701 ZFP82Q8N141 532 aa14.53□□□□□ -0.08
USP39-201ENST00000323701 LINC00469Q8N7U9 141 aa14.53□□□□□ -0.08
USP39-201ENST00000323701 SRSF8Q9BRL6 282 aaKnown RBP14.53□□□□□ -0.08
USP39-201ENST00000323701 C20orf24Q9BUV8 137 aa14.53□□□□□ -0.08
USP39-201ENST00000323701 MEGF9Q9H1U4 602 aa14.53□□□□□ -0.08
USP39-201ENST00000323701 RPS10P5Q9NQ39 176 aa14.53□□□□□ -0.08
USP39-201ENST00000323701 MDFIC2A0A1B0GVS7 189 aa14.52□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 97.6 ms