RNA–Protein interactions for RNA: ENST00000211998.9

VCL-201, Transcript of vinculin, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene VCL, Length 5,490 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-201ENST00000211998 LILRA1O75019 489 aa8.74□□□□□ -1.01
VCL-201ENST00000211998 LHFPL1Q86WI0 220 aa8.74□□□□□ -1.01
VCL-201ENST00000211998 ARFGEF1Q9Y6D6 1849 aa8.74□□□□□ -1.01
VCL-201ENST00000211998 OTOFQ9HC10 1997 aa8.74□□□□□ -1.01
VCL-201ENST00000211998 C12orf77C9JDV5 145 aa8.74□□□□□ -1.01
VCL-201ENST00000211998 PF4V1P10720 104 aa8.74□□□□□ -1.01
VCL-201ENST00000211998 NXT2Q9NPJ8 142 aaKnown RBP8.74□□□□□ -1.01
VCL-201ENST00000211998 ATAD5Q96QE3 1844 aa8.74□□□□□ -1.01
VCL-201ENST00000211998 TNS1Q9HBL0 1735 aaKnown RBP8.74□□□□□ -1.01
VCL-201ENST00000211998 C9orf118A6NHY6 69 aa8.74□□□□□ -1.01
VCL-201ENST00000211998 OR9G9P0C7N8 305 aa8.74□□□□□ -1.01
VCL-201ENST00000211998 LYL1P12980 280 aa8.74□□□□□ -1.01
VCL-201ENST00000211998 LHFPL4Q7Z7J7 247 aa8.74□□□□□ -1.01
VCL-201ENST00000211998 OR9G1Q8NH87 305 aa8.74□□□□□ -1.01
VCL-201ENST00000211998 OR5P3Q8WZ94 311 aa8.74□□□□□ -1.01
VCL-201ENST00000211998 TMEM54Q969K7 222 aa8.74□□□□□ -1.01
VCL-201ENST00000211998 COL4A5P29400 1685 aa8.73□□□□□ -1.01
VCL-201ENST00000211998 ATXN8Q156A1 80 aa8.73□□□□□ -1.01
VCL-201ENST00000211998 RASL11AQ6T310 242 aa8.73□□□□□ -1.01
VCL-201ENST00000211998 LINC00114Q6XXX2 140 aa8.73□□□□□ -1.01
VCL-201ENST00000211998 KLF14Q8TD94 323 aaPredicted RBP8.73□□□□□ -1.01
VCL-201ENST00000211998 SMPXQ9UHP9 88 aa8.73□□□□□ -1.01
VCL-201ENST00000211998 KLF12Q9Y4X4 402 aa8.73□□□□□ -1.01
VCL-201ENST00000211998 EPOPA6NHQ4 379 aa8.73□□□□□ -1.01
VCL-201ENST00000211998 GFRA3O60609 400 aa8.73□□□□□ -1.01
VCL-201ENST00000211998 PDLIM4P50479 330 aa8.73□□□□□ -1.01
VCL-201ENST00000211998 SRSF1Q07955 248 aaKnown RBP eCLIP8.73□□□□□ -1.012e-6■□□□□ 10.6
VCL-201ENST00000211998 CDCP2Q5VXM1 449 aa8.73□□□□□ -1.01
VCL-201ENST00000211998 Q6ZWC4 215 aa8.73□□□□□ -1.01
VCL-201ENST00000211998 TDRD15B5MCY1 1934 aaKnown RBP8.73□□□□□ -1.01
VCL-201ENST00000211998 MAP1BP46821 2468 aaKnown RBP8.73□□□□□ -1.01
VCL-201ENST00000211998 PYYP10082 97 aa8.73□□□□□ -1.01
VCL-201ENST00000211998 Q0VG73 95 aa8.73□□□□□ -1.01
VCL-201ENST00000211998 CD300EQ496F6 205 aaPredicted RBP8.73□□□□□ -1.01
VCL-201ENST00000211998 FAM106AQ4KMX7 169 aa8.73□□□□□ -1.01
VCL-201ENST00000211998 FAM89BQ8N5H3 189 aa8.73□□□□□ -1.01
VCL-201ENST00000211998 CITED2Q99967 270 aaPredicted RBP8.73□□□□□ -1.01
VCL-201ENST00000211998 NPFFR1Q9GZQ6 430 aa8.73□□□□□ -1.01
VCL-201ENST00000211998 PGPEP1Q9NXJ5 209 aa8.73□□□□□ -1.01
VCL-201ENST00000211998 TRBV7-9A0A0J9YWB2 115 aa8.73□□□□□ -1.01
VCL-201ENST00000211998 B9A039 149 aa8.73□□□□□ -1.01
VCL-201ENST00000211998 C9JCJ5 164 aa8.73□□□□□ -1.01
VCL-201ENST00000211998 TMEM144Q7Z5S9 345 aa8.73□□□□□ -1.01
VCL-201ENST00000211998 MGST2Q99735 147 aa8.73□□□□□ -1.01
VCL-201ENST00000211998 SRXN1Q9BYN0 137 aa8.73□□□□□ -1.01
VCL-201ENST00000211998 SS18L2Q9UHA2 77 aa8.73□□□□□ -1.01
VCL-201ENST00000211998 PFN1P07737 140 aaKnown RBP8.72□□□□□ -1.01
VCL-201ENST00000211998 EVI2AP22794 236 aa8.72□□□□□ -1.01
VCL-201ENST00000211998 KLF17Q5JT82 389 aaPredicted RBP8.72□□□□□ -1.01
VCL-201ENST00000211998 WDR83OSQ9Y284 106 aa8.72□□□□□ -1.01
VCL-201ENST00000211998 RGPD3A6NKT7 1758 aaPredicted RBP8.72□□□□□ -1.01
VCL-201ENST00000211998 K7EP34 96 aa8.72□□□□□ -1.01
VCL-201ENST00000211998 SMAD7O15105 426 aaKnown RBP8.72□□□□□ -1.01
VCL-201ENST00000211998 SPSB3Q6PJ21 355 aa8.72□□□□□ -1.01
VCL-201ENST00000211998 MYO16Q9Y6X6 1858 aa8.72□□□□□ -1.01
VCL-201ENST00000211998 SCN8AQ9UQD0 1980 aa8.72□□□□□ -1.01
VCL-201ENST00000211998 PSMB11A5LHX3 300 aa8.72□□□□□ -1.01
VCL-201ENST00000211998 FXYD7P58549 80 aa8.72□□□□□ -1.01
VCL-201ENST00000211998 DOCK5Q9H7D0 1870 aa8.72□□□□□ -1.01
VCL-201ENST00000211998 C9orf172C9J069 976 aa8.72□□□□□ -1.01
VCL-201ENST00000211998 C2orf82Q6UX34 121 aa8.72□□□□□ -1.01
VCL-201ENST00000211998 OTORQ9NRC9 128 aa8.72□□□□□ -1.01
VCL-201ENST00000211998 hCG_38984A0A1B0GV85 526 aa8.71□□□□□ -1.01
VCL-201ENST00000211998 CSRP2Q16527 193 aa8.71□□□□□ -1.01
VCL-201ENST00000211998 RRN3P1Q2M238 152 aa8.71□□□□□ -1.01
VCL-201ENST00000211998 ETDBQ3ZM63 59 aa8.71□□□□□ -1.01
VCL-201ENST00000211998 CHAC1Q9BUX1 264 aa8.71□□□□□ -1.01
VCL-201ENST00000211998 TRIP12Q14669 1992 aaPredicted RBP8.71□□□□□ -1.01
VCL-201ENST00000211998 TRAV21A0A0B4J279 112 aa8.71□□□□□ -1.01
VCL-201ENST00000211998 PRR19A6NJB7 356 aa8.71□□□□□ -1.01
VCL-201ENST00000211998 FOXH1O75593 365 aa8.71□□□□□ -1.01
VCL-201ENST00000211998 ZNF562Q6V9R5 426 aa8.71□□□□□ -1.01
VCL-201ENST00000211998 PPP1R32Q7Z5V6 425 aa8.71□□□□□ -1.01
VCL-201ENST00000211998 IGKV1-9A0A0C4DH69 117 aa8.71□□□□□ -1.02
VCL-201ENST00000211998 Q6ZT83 130 aa8.71□□□□□ -1.02
VCL-201ENST00000211998 RP1L1Q8IWN7 2480 aaPredicted RBP8.71□□□□□ -1.02
VCL-201ENST00000211998 SIGLEC12Q96PQ1 595 aa8.71□□□□□ -1.02
VCL-201ENST00000211998 CSTL1Q9H114 145 aa8.71□□□□□ -1.02
VCL-201ENST00000211998 MBNL3Q9NUK0 354 aaKnown RBP8.71□□□□□ -1.02
VCL-201ENST00000211998 CCL25O15444 150 aa8.71□□□□□ -1.02
VCL-201ENST00000211998 MLNRO43193 412 aa8.71□□□□□ -1.02
VCL-201ENST00000211998 RAMP3O60896 148 aa8.71□□□□□ -1.02
VCL-201ENST00000211998 ZNF138P52744 262 aa8.71□□□□□ -1.02
VCL-201ENST00000211998 WFDC12Q8WWY7 111 aa8.71□□□□□ -1.02
VCL-201ENST00000211998 PPBPP02775 128 aa8.7□□□□□ -1.02
VCL-201ENST00000211998 ASIPP42127 132 aa8.7□□□□□ -1.02
VCL-201ENST00000211998 NUP35Q8NFH5 326 aa8.7□□□□□ -1.02
VCL-201ENST00000211998 CACNG8Q8WXS5 425 aa8.7□□□□□ -1.02
VCL-201ENST00000211998 DDB2Q92466 427 aa8.7□□□□□ -1.02
VCL-201ENST00000211998 RAX2Q96IS3 184 aa8.7□□□□□ -1.02
VCL-201ENST00000211998 LRRC37AA6NMS7 1700 aa8.7□□□□□ -1.02
VCL-201ENST00000211998 IGKV3OR2-268A0A0C4DH90 116 aa8.7□□□□□ -1.02
VCL-201ENST00000211998 NPIPB11E5RHQ5 1161 aa8.7□□□□□ -1.02
VCL-201ENST00000211998 HIST1H4AP62805 103 aaKnown RBP8.7□□□□□ -1.02
VCL-201ENST00000211998 ATP5G2Q06055 141 aa8.7□□□□□ -1.02
VCL-201ENST00000211998 RPRMLQ8N4K4 120 aa8.7□□□□□ -1.02
VCL-201ENST00000211998 IGHV3-35A0A0C4DH35 117 aa8.7□□□□□ -1.02
VCL-201ENST00000211998 ATP5J2P56134 94 aa8.7□□□□□ -1.02
VCL-201ENST00000211998 SPATA31B1PQ5VZV4 182 aa8.7□□□□□ -1.02
VCL-201ENST00000211998 UNQ6494/PRO21346Q6UXR6 183 aa8.7□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 375.7 ms