RNA–Protein interactions for RNA: ENST00000597901.1

LIG1-215, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 565 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-215ENST00000597901 TRIM16LQ309B1 348 aa11.27□□□□□ -0.61
LIG1-215ENST00000597901 SPINK9Q5DT21 86 aa11.27□□□□□ -0.61
LIG1-215ENST00000597901 FAAP20Q6NZ36 180 aa11.27□□□□□ -0.61
LIG1-215ENST00000597901 SMIM4Q8WVI0 70 aa11.27□□□□□ -0.61
LIG1-215ENST00000597901 ZNF414Q96IQ9 312 aa11.27□□□□□ -0.61
LIG1-215ENST00000597901 RETNQ9HD89 108 aa11.27□□□□□ -0.61
LIG1-215ENST00000597901 RABL2AQ9UBK7 228 aaPredicted RBP11.27□□□□□ -0.61
LIG1-215ENST00000597901 RABL2BQ9UNT1 228 aa11.27□□□□□ -0.61
LIG1-215ENST00000597901 DISC1C4P0D8 188 aa11.26□□□□□ -0.61
LIG1-215ENST00000597901 INS-IGF2F8WCM5 200 aa11.26□□□□□ -0.61
LIG1-215ENST00000597901 NUPL2O15504 423 aaKnown RBP11.26□□□□□ -0.61
LIG1-215ENST00000597901 ST8SIA3O43173 380 aa11.26□□□□□ -0.61
LIG1-215ENST00000597901 ZNF207O43670 478 aaKnown RBP11.26□□□□□ -0.61
LIG1-215ENST00000597901 B3GALNT1O75752 331 aa11.26□□□□□ -0.61
LIG1-215ENST00000597901 IFNA17P01571 189 aa11.26□□□□□ -0.61
LIG1-215ENST00000597901 SNCAP37840 140 aa11.26□□□□□ -0.61
LIG1-215ENST00000597901 AKR1C2P52895 323 aa11.26□□□□□ -0.61
LIG1-215ENST00000597901 LAMTOR1Q6IAA8 161 aa11.26□□□□□ -0.61
LIG1-215ENST00000597901 PINX1Q96BK5 328 aaKnown RBP11.26□□□□□ -0.61
LIG1-215ENST00000597901 RRNAD1Q96FB5 475 aaKnown RBP11.26□□□□□ -0.61
LIG1-215ENST00000597901 CCDC59Q9P031 241 aaKnown RBP11.26□□□□□ -0.61
LIG1-215ENST00000597901 SMPXQ9UHP9 88 aa11.26□□□□□ -0.61
LIG1-215ENST00000597901 GPR132Q9UNW8 380 aa11.26□□□□□ -0.61
LIG1-215ENST00000597901 TEX13DA0A0J9YY54 714 aaPredicted RBP11.25□□□□□ -0.61
LIG1-215ENST00000597901 C15orf62A8K5M9 175 aa11.25□□□□□ -0.61
LIG1-215ENST00000597901 TSPAN4O14817 238 aa11.25□□□□□ -0.61
LIG1-215ENST00000597901 CDS2O95674 445 aa11.25□□□□□ -0.61
LIG1-215ENST00000597901 AKAIN1P0CW23 69 aa11.25□□□□□ -0.61
LIG1-215ENST00000597901 RELQ04864 619 aaPredicted RBP11.25□□□□□ -0.61
LIG1-215ENST00000597901 ZFAND6Q6FIF0 208 aa11.25□□□□□ -0.61
LIG1-215ENST00000597901 Q6ZRM9 215 aa11.25□□□□□ -0.61
LIG1-215ENST00000597901 GLYATL2Q8WU03 294 aa11.25□□□□□ -0.61
LIG1-215ENST00000597901 SPAG8Q99932 426 aaPredicted RBP11.25□□□□□ -0.61
LIG1-215ENST00000597901 SOSTQ9BQB4 213 aa11.25□□□□□ -0.61
LIG1-215ENST00000597901 NXF2Q9GZY0 626 aaKnown RBP11.25□□□□□ -0.61
LIG1-215ENST00000597901 TMEM222Q9H0R3 208 aa11.25□□□□□ -0.61
LIG1-215ENST00000597901 C14orf166Q9Y224 244 aaKnown RBP11.25□□□□□ -0.61
LIG1-215ENST00000597901 A0A0G2JRQ6 117 aa11.24□□□□□ -0.61
LIG1-215ENST00000597901 GSTZ1O43708 216 aaPredicted RBP11.24□□□□□ -0.61
LIG1-215ENST00000597901 YIF1AO95070 293 aa11.24□□□□□ -0.61
LIG1-215ENST00000597901 OR5AC1P0C628 307 aa11.24□□□□□ -0.61
LIG1-215ENST00000597901 TNFSF8P32971 234 aa11.24□□□□□ -0.61
LIG1-215ENST00000597901 SURF2Q15527 256 aaPredicted RBP11.24□□□□□ -0.61
LIG1-215ENST00000597901 PVRIGQ6DKI7 326 aa11.24□□□□□ -0.61
LIG1-215ENST00000597901 SELENOHQ8IZQ5 122 aaKnown RBP11.24□□□□□ -0.61
LIG1-215ENST00000597901 SLC35G3Q8N808 338 aa11.24□□□□□ -0.61
LIG1-215ENST00000597901 DUSP18Q8NEJ0 188 aa11.24□□□□□ -0.61
LIG1-215ENST00000597901 OR4C16Q8NGL9 310 aa11.24□□□□□ -0.61
LIG1-215ENST00000597901 FAM110AQ9BQ89 295 aa11.24□□□□□ -0.61
LIG1-215ENST00000597901 PDCD10Q9BUL8 212 aa11.24□□□□□ -0.61
LIG1-215ENST00000597901 SLIRPQ9GZT3 109 aaKnown RBP11.24□□□□□ -0.61
LIG1-215ENST00000597901 C6orf62Q9GZU0 229 aaPredicted RBP11.24□□□□□ -0.61
LIG1-215ENST00000597901 RSL24D1Q9UHA3 163 aaKnown RBP11.24□□□□□ -0.61
LIG1-215ENST00000597901 RYR3Q15413 4870 aa11.24□□□□□ -0.61
LIG1-215ENST00000597901 LOC102724200A0A096LPH7 203 aaPredicted RBP11.23□□□□□ -0.61
LIG1-215ENST00000597901 IGHV7-4-1A0A0J9YVY3 117 aa11.23□□□□□ -0.61
LIG1-215ENST00000597901 ANKRD20A5PA0PJZ0 165 aa11.23□□□□□ -0.61
LIG1-215ENST00000597901 FABP12A6NFH5 140 aa11.23□□□□□ -0.61
LIG1-215ENST00000597901 H3BMQ9 156 aa11.23□□□□□ -0.61
LIG1-215ENST00000597901 GNG7O60262 68 aa11.23□□□□□ -0.61
LIG1-215ENST00000597901 TMEM50AO95807 157 aa11.23□□□□□ -0.61
LIG1-215ENST00000597901 SUB1P53999 127 aaKnown RBP eCLIP11.23□□□□□ -0.61
LIG1-215ENST00000597901 DHODHQ02127 395 aa11.23□□□□□ -0.61
LIG1-215ENST00000597901 TMEM116Q8NCL8 245 aa11.23□□□□□ -0.61
LIG1-215ENST00000597901 OR51S1Q8NGJ8 323 aa11.23□□□□□ -0.61
LIG1-215ENST00000597901 RNASE11Q8TAA1 199 aaKnown RBP11.23□□□□□ -0.61
LIG1-215ENST00000597901 OR10C1Q96KK4 312 aa11.23□□□□□ -0.61
LIG1-215ENST00000597901 RHPN1-AS1Q9BWJ2 59 aa11.23□□□□□ -0.61
LIG1-215ENST00000597901 GGTLC1Q9BX51 225 aa11.23□□□□□ -0.61
LIG1-215ENST00000597901 NAA60Q9H7X0 242 aa11.23□□□□□ -0.61
LIG1-215ENST00000597901 CTNNBIP1Q9NSA3 81 aaPredicted RBP11.23□□□□□ -0.61
LIG1-215ENST00000597901 TRAV14DV4A0A0A6YYC5 116 aa11.22□□□□□ -0.61
LIG1-215ENST00000597901 CHEK1O14757 476 aa11.22□□□□□ -0.61
LIG1-215ENST00000597901 RNASE2P10153 161 aaKnown RBP11.22□□□□□ -0.61
LIG1-215ENST00000597901 NPBWR1P48145 328 aa11.22□□□□□ -0.61
LIG1-215ENST00000597901 MLANAQ16655 118 aa11.22□□□□□ -0.61
LIG1-215ENST00000597901 FAM219AQ8IW50 185 aa11.22□□□□□ -0.61
LIG1-215ENST00000597901 MCFD2Q8NI22 146 aa11.22□□□□□ -0.61
LIG1-215ENST00000597901 LHFPL5Q8TAF8 219 aa11.22□□□□□ -0.61
LIG1-215ENST00000597901 GPR146Q96CH1 333 aa11.22□□□□□ -0.61
LIG1-215ENST00000597901 RNF2Q99496 336 aa11.22□□□□□ -0.61
LIG1-215ENST00000597901 PRRT1Q99946 306 aa11.22□□□□□ -0.61
LIG1-215ENST00000597901 ENY2Q9NPA8 101 aa11.22□□□□□ -0.61
LIG1-215ENST00000597901 UBQLN2Q9UHD9 624 aa11.22□□□□□ -0.61
LIG1-215ENST00000597901 IGHV3-49A0A0A0MS15 119 aa11.21□□□□□ -0.61
LIG1-215ENST00000597901 CRYM-AS1A6NIL9 109 aa11.21□□□□□ -0.61
LIG1-215ENST00000597901 NOL3O60936 208 aaKnown RBP11.21□□□□□ -0.61
LIG1-215ENST00000597901 HOXA1P49639 335 aaPredicted RBP11.21□□□□□ -0.61
LIG1-215ENST00000597901 SPCS3P61009 180 aa11.21□□□□□ -0.61
LIG1-215ENST00000597901 AARDQ4LEZ3 155 aa11.21□□□□□ -0.61
LIG1-215ENST00000597901 TOMM20LQ6UXN7 152 aa11.21□□□□□ -0.61
LIG1-215ENST00000597901 OR52E5Q8NH55 327 aa11.21□□□□□ -0.61
LIG1-215ENST00000597901 IL17DQ8TAD2 202 aa11.21□□□□□ -0.61
LIG1-215ENST00000597901 RBPMSQ93062 196 aaKnown RBP11.21□□□□□ -0.61
LIG1-215ENST00000597901 KCNIP3Q9Y2W7 256 aa11.21□□□□□ -0.61
LIG1-215ENST00000597901 OR4C46A6NHA9 309 aa11.2□□□□□ -0.62
LIG1-215ENST00000597901 CORTO00230 105 aa11.2□□□□□ -0.62
LIG1-215ENST00000597901 TMEM268Q5VZI3 342 aa11.2□□□□□ -0.62
LIG1-215ENST00000597901 SCGB3A2Q96PL1 93 aa11.2□□□□□ -0.62
LIG1-215ENST00000597901 OVOL2Q9BRP0 275 aa11.2□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 74.5 ms