RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 CMTM1Q8IZ96 169 aa15.51■□□□□ 0.07
VPS53-216ENST00000574029 OR1P1Q8NH06 330 aa15.51■□□□□ 0.07
VPS53-216ENST00000574029 OR10C1Q96KK4 312 aa15.51■□□□□ 0.07
VPS53-216ENST00000574029 RHPN1-AS1Q9BWJ2 59 aa15.51■□□□□ 0.07
VPS53-216ENST00000574029 C6orf62Q9GZU0 229 aaPredicted RBP15.51■□□□□ 0.07
VPS53-216ENST00000574029 FXYD6Q9H0Q3 95 aa15.51■□□□□ 0.07
VPS53-216ENST00000574029 TMEM14BQ9NUH8 114 aa15.51■□□□□ 0.07
VPS53-216ENST00000574029 FRAS1Q86XX4 4008 aa15.5■□□□□ 0.07
VPS53-216ENST00000574029 CCDC160A6NGH7 325 aa15.5■□□□□ 0.07
VPS53-216ENST00000574029 DBX1A6NMT0 343 aa15.5■□□□□ 0.07
VPS53-216ENST00000574029 HLA-DMAP28067 261 aa15.5■□□□□ 0.07
VPS53-216ENST00000574029 HRH1P35367 487 aa15.5■□□□□ 0.07
VPS53-216ENST00000574029 RELQ04864 619 aaPredicted RBP15.5■□□□□ 0.07
VPS53-216ENST00000574029 ZNF124Q15973 351 aa15.5■□□□□ 0.07
VPS53-216ENST00000574029 TMEM116Q8NCL8 245 aa15.5■□□□□ 0.07
VPS53-216ENST00000574029 GATAD1Q8WUU5 269 aa15.5■□□□□ 0.07
VPS53-216ENST00000574029 CSTL1Q9H114 145 aa15.5■□□□□ 0.07
VPS53-216ENST00000574029 MTFP1Q9UDX5 166 aa15.5■□□□□ 0.07
VPS53-216ENST00000574029 C15orf61A6NNL5 157 aa15.49■□□□□ 0.07
VPS53-216ENST00000574029 I3L2K1 104 aa15.49■□□□□ 0.07
VPS53-216ENST00000574029 GPR31O00270 319 aa15.49■□□□□ 0.07
VPS53-216ENST00000574029 NUPL2O15504 423 aaKnown RBP15.49■□□□□ 0.07
VPS53-216ENST00000574029 MRPS10P82664 201 aaKnown RBP15.49■□□□□ 0.07
VPS53-216ENST00000574029 LGALS9CQ6DKI2 356 aa15.49■□□□□ 0.07
VPS53-216ENST00000574029 OR6F1Q8NGZ6 308 aa15.49■□□□□ 0.07
VPS53-216ENST00000574029 OR52I2Q8NH67 350 aa15.49■□□□□ 0.07
VPS53-216ENST00000574029 MCFD2Q8NI22 146 aa15.49■□□□□ 0.07
VPS53-216ENST00000574029 DIRAS2Q96HU8 199 aa15.49■□□□□ 0.07
VPS53-216ENST00000574029 TSC22D3Q99576 134 aa15.49■□□□□ 0.07
VPS53-216ENST00000574029 TXN2Q99757 166 aa15.49■□□□□ 0.07
VPS53-216ENST00000574029 KLK11Q9UBX7 282 aa15.49■□□□□ 0.07
VPS53-216ENST00000574029 MPTX1A8MV57 137 aa15.48■□□□□ 0.07
VPS53-216ENST00000574029 GABARAPH6UMI1 98 aa15.48■□□□□ 0.07
VPS53-216ENST00000574029 CTDSPLO15194 276 aa15.48■□□□□ 0.07
VPS53-216ENST00000574029 FAM90A2PQ658T7 463 aa15.48■□□□□ 0.07
VPS53-216ENST00000574029 SOSTQ9BQB4 213 aa15.48■□□□□ 0.07
VPS53-216ENST00000574029 TNFSF8P32971 234 aa15.47■□□□□ 0.07
VPS53-216ENST00000574029 MFAP4P55083 255 aa15.47■□□□□ 0.07
VPS53-216ENST00000574029 KMT2AQ03164 3969 aa15.47■□□□□ 0.07
VPS53-216ENST00000574029 SSBP1Q04837 148 aaKnown RBP15.47■□□□□ 0.07
VPS53-216ENST00000574029 ZNF114Q8NC26 417 aa15.47■□□□□ 0.07
VPS53-216ENST00000574029 RARRES2Q99969 163 aa15.47■□□□□ 0.07
VPS53-216ENST00000574029 FAM212BQ9NTI7 297 aaPredicted RBP15.47■□□□□ 0.07
VPS53-216ENST00000574029 IGHV3-49A0A0A0MS15 119 aa15.46■□□□□ 0.07
VPS53-216ENST00000574029 TRAV14DV4A0A0A6YYC5 116 aa15.46■□□□□ 0.07
VPS53-216ENST00000574029 DEDDO75618 318 aa15.46■□□□□ 0.07
VPS53-216ENST00000574029 YIF1AO95070 293 aa15.46■□□□□ 0.07
VPS53-216ENST00000574029 TBPP20226 339 aa15.46■□□□□ 0.07
VPS53-216ENST00000574029 TFPI2P48307 235 aa15.46■□□□□ 0.07
VPS53-216ENST00000574029 MISP3Q96FF7 219 aa15.46■□□□□ 0.07
VPS53-216ENST00000574029 C11orf68Q9H3H3 251 aaKnown RBP15.46■□□□□ 0.07
VPS53-216ENST00000574029 NDUFA13Q9P0J0 144 aa15.46■□□□□ 0.07
VPS53-216ENST00000574029 TSPAN5P62079 268 aa15.45■□□□□ 0.06
VPS53-216ENST00000574029 TMEM229BQ8NBD8 167 aa15.45■□□□□ 0.06
VPS53-216ENST00000574029 SMIM4Q8WVI0 70 aa15.45■□□□□ 0.06
VPS53-216ENST00000574029 SEC22AQ96IW7 307 aa15.45■□□□□ 0.06
VPS53-216ENST00000574029 IGKV3-7A0A075B6H7 116 aa15.44■□□□□ 0.06
VPS53-216ENST00000574029 MT-CO2P00403 227 aa15.44■□□□□ 0.06
VPS53-216ENST00000574029 CD74P04233 296 aa15.44■□□□□ 0.06
VPS53-216ENST00000574029 UCP3P55916 312 aa15.44■□□□□ 0.06
VPS53-216ENST00000574029 NANOS2P60321 138 aaKnown RBP15.44■□□□□ 0.06
VPS53-216ENST00000574029 PRCDQ00LT1 54 aa15.44■□□□□ 0.06
VPS53-216ENST00000574029 IL18Q14116 193 aa15.44■□□□□ 0.06
VPS53-216ENST00000574029 PHLDA2Q53GA4 152 aa15.44■□□□□ 0.06
VPS53-216ENST00000574029 LPCAT3Q6P1A2 487 aa15.44■□□□□ 0.06
VPS53-216ENST00000574029 OR11H2Q8NH07 326 aa15.44■□□□□ 0.06
VPS53-216ENST00000574029 C11orf45Q8TAV5 145 aa15.44■□□□□ 0.06
VPS53-216ENST00000574029 MFFQ9GZY8 342 aa15.44■□□□□ 0.06
VPS53-216ENST00000574029 IGHV3OR16-13A0A075B7E8 117 aa15.43■□□□□ 0.06
VPS53-216ENST00000574029 IGHV3-74A0A0B4J1X5 117 aa15.43■□□□□ 0.06
VPS53-216ENST00000574029 GSTZ1O43708 216 aaPredicted RBP15.43■□□□□ 0.06
VPS53-216ENST00000574029 IGKV1-39P01597 117 aa15.43■□□□□ 0.06
VPS53-216ENST00000574029 CD3DP04234 171 aa15.43■□□□□ 0.06
VPS53-216ENST00000574029 IGKV1D-39P04432 117 aa15.43■□□□□ 0.06
VPS53-216ENST00000574029 CD5P06127 495 aa15.43■□□□□ 0.06
VPS53-216ENST00000574029 RNASE12Q5GAN4 147 aaKnown RBP15.43■□□□□ 0.06
VPS53-216ENST00000574029 TBC1D26Q86UD7 250 aa15.43■□□□□ 0.06
VPS53-216ENST00000574029 GBGT1Q8N5D6 347 aa15.43■□□□□ 0.06
VPS53-216ENST00000574029 OR4A16Q8NH70 328 aa15.43■□□□□ 0.06
VPS53-216ENST00000574029 FABP12A6NFH5 140 aa15.42■□□□□ 0.06
VPS53-216ENST00000574029 M0QYG6 137 aa15.42■□□□□ 0.06
VPS53-216ENST00000574029 GNG7O60262 68 aa15.42■□□□□ 0.06
VPS53-216ENST00000574029 IGHV3-48P01763 117 aa15.42■□□□□ 0.06
VPS53-216ENST00000574029 TAS2R19P59542 299 aa15.42■□□□□ 0.06
VPS53-216ENST00000574029 PAFAH1B2P68402 229 aa15.42■□□□□ 0.06
VPS53-216ENST00000574029 RBMS2Q15434 407 aaKnown RBP15.42■□□□□ 0.06
VPS53-216ENST00000574029 RNASE10Q5GAN6 216 aaKnown RBP15.42■□□□□ 0.06
VPS53-216ENST00000574029 TCF24Q7RTU0 167 aa15.42■□□□□ 0.06
VPS53-216ENST00000574029 H2BFWTQ7Z2G1 175 aa15.42■□□□□ 0.06
VPS53-216ENST00000574029 ARRDC1Q8N5I2 433 aa15.42■□□□□ 0.06
VPS53-216ENST00000574029 GINS3Q9BRX5 216 aa15.42■□□□□ 0.06
VPS53-216ENST00000574029 VSIRQ9H7M9 311 aa15.42■□□□□ 0.06
VPS53-216ENST00000574029 IFNA4P05014 189 aa15.41■□□□□ 0.06
VPS53-216ENST00000574029 S100GP29377 79 aa15.41■□□□□ 0.06
VPS53-216ENST00000574029 HSPE1P61604 102 aaKnown RBP15.41■□□□□ 0.06
VPS53-216ENST00000574029 TOMM20LQ6UXN7 152 aa15.41■□□□□ 0.06
VPS53-216ENST00000574029 LHFPL1Q86WI0 220 aa15.41■□□□□ 0.06
VPS53-216ENST00000574029 ST8SIA2Q92186 375 aa15.41■□□□□ 0.06
VPS53-216ENST00000574029 PINX1Q96BK5 328 aaKnown RBP15.41■□□□□ 0.06
VPS53-216ENST00000574029 ERHP84090 104 aaKnown RBP15.4■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms