RNA–Protein interactions for RNA: ENST00000564994.5

VPS39-208, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-208ENST00000564994 NXF2Q9GZY0 626 aaKnown RBP8.05□□□□□ -1.12
VPS39-208ENST00000564994 IGHV3-49A0A0A0MS15 119 aa8.04□□□□□ -1.12
VPS39-208ENST00000564994 A0A0G2JRQ6 117 aa8.04□□□□□ -1.12
VPS39-208ENST00000564994 C15orf62A8K5M9 175 aa8.04□□□□□ -1.12
VPS39-208ENST00000564994 GABARAPH6UMI1 98 aa8.04□□□□□ -1.12
VPS39-208ENST00000564994 NUPL2O15504 423 aaKnown RBP8.04□□□□□ -1.12
VPS39-208ENST00000564994 ST8SIA3O43173 380 aa8.04□□□□□ -1.12
VPS39-208ENST00000564994 RAB3DO95716 219 aa8.04□□□□□ -1.12
VPS39-208ENST00000564994 UCP1P25874 307 aa8.04□□□□□ -1.12
VPS39-208ENST00000564994 MFAP4P55083 255 aa8.04□□□□□ -1.12
VPS39-208ENST00000564994 TAS2R19P59542 299 aa8.04□□□□□ -1.12
VPS39-208ENST00000564994 ERHP84090 104 aaKnown RBP8.04□□□□□ -1.12
VPS39-208ENST00000564994 SCGB2B2Q4G0G5 96 aa8.04□□□□□ -1.12
VPS39-208ENST00000564994 PVRIGQ6DKI7 326 aa8.04□□□□□ -1.12
VPS39-208ENST00000564994 PINX1Q96BK5 328 aaKnown RBP8.04□□□□□ -1.12
VPS39-208ENST00000564994 OR10C1Q96KK4 312 aa8.04□□□□□ -1.12
VPS39-208ENST00000564994 RNF2Q99496 336 aa8.04□□□□□ -1.12
VPS39-208ENST00000564994 TXN2Q99757 166 aa8.04□□□□□ -1.12
VPS39-208ENST00000564994 COPZ2Q9P299 210 aa8.04□□□□□ -1.12
VPS39-208ENST00000564994 SMPXQ9UHP9 88 aa8.04□□□□□ -1.12
VPS39-208ENST00000564994 IGHV7-4-1A0A0J9YVY3 117 aa8.03□□□□□ -1.12
VPS39-208ENST00000564994 INS-IGF2F8WCM5 200 aa8.03□□□□□ -1.12
VPS39-208ENST00000564994 CHEK1O14757 476 aa8.03□□□□□ -1.12
VPS39-208ENST00000564994 RGS5O15539 181 aa8.03□□□□□ -1.12
VPS39-208ENST00000564994 YIF1AO95070 293 aa8.03□□□□□ -1.12
VPS39-208ENST00000564994 CTSDP07339 412 aaPredicted RBP8.03□□□□□ -1.12
VPS39-208ENST00000564994 ETV6P41212 452 aa8.03□□□□□ -1.12
VPS39-208ENST00000564994 AKR1C2P52895 323 aa8.03□□□□□ -1.12
VPS39-208ENST00000564994 RELQ04864 619 aaPredicted RBP8.03□□□□□ -1.12
VPS39-208ENST00000564994 TRIM16LQ309B1 348 aa8.03□□□□□ -1.12
VPS39-208ENST00000564994 LAMTOR1Q6IAA8 161 aa8.03□□□□□ -1.12
VPS39-208ENST00000564994 Q6ZRM9 215 aa8.03□□□□□ -1.12
VPS39-208ENST00000564994 CLVS1Q8IUQ0 354 aaPredicted RBP8.03□□□□□ -1.12
VPS39-208ENST00000564994 LHFPL5Q8TAF8 219 aa8.03□□□□□ -1.12
VPS39-208ENST00000564994 ZFAND1Q8TCF1 268 aa8.03□□□□□ -1.12
VPS39-208ENST00000564994 DYNC2LI1Q8TCX1 351 aa8.03□□□□□ -1.12
VPS39-208ENST00000564994 C15orf40Q8WUR7 153 aa8.03□□□□□ -1.12
VPS39-208ENST00000564994 RTBDNQ9BSG5 229 aaPredicted RBP8.03□□□□□ -1.12
VPS39-208ENST00000564994 RHPN1-AS1Q9BWJ2 59 aa8.03□□□□□ -1.12
VPS39-208ENST00000564994 GNG7O60262 68 aa8.02□□□□□ -1.13
VPS39-208ENST00000564994 IFNA17P01571 189 aa8.02□□□□□ -1.13
VPS39-208ENST00000564994 OR5AC1P0C628 307 aa8.02□□□□□ -1.13
VPS39-208ENST00000564994 RNASE2P10153 161 aaKnown RBP8.02□□□□□ -1.13
VPS39-208ENST00000564994 MRPS10P82664 201 aaKnown RBP8.02□□□□□ -1.13
VPS39-208ENST00000564994 SSBP1Q04837 148 aaKnown RBP8.02□□□□□ -1.13
VPS39-208ENST00000564994 FAM90A2PQ658T7 463 aa8.02□□□□□ -1.13
VPS39-208ENST00000564994 SLC35G3Q8N808 338 aa8.02□□□□□ -1.13
VPS39-208ENST00000564994 CCDC71LQ8N9Z2 235 aa8.02□□□□□ -1.13
VPS39-208ENST00000564994 TMEM116Q8NCL8 245 aa8.02□□□□□ -1.13
VPS39-208ENST00000564994 SMIM4Q8WVI0 70 aa8.02□□□□□ -1.13
VPS39-208ENST00000564994 MRPL36Q9P0J6 103 aaKnown RBP8.02□□□□□ -1.13
VPS39-208ENST00000564994 BIRC6Q9NR09 4857 aa8.02□□□□□ -1.13
VPS39-208ENST00000564994 IGHV3OR16-13A0A075B7E8 117 aa8.01□□□□□ -1.13
VPS39-208ENST00000564994 TRAV14DV4A0A0A6YYC5 116 aa8.01□□□□□ -1.13
VPS39-208ENST00000564994 IGHV3-74A0A0B4J1X5 117 aa8.01□□□□□ -1.13
VPS39-208ENST00000564994 OR4C46A6NHA9 309 aa8.01□□□□□ -1.13
VPS39-208ENST00000564994 CTDSPLO15194 276 aa8.01□□□□□ -1.13
VPS39-208ENST00000564994 ATG12O94817 140 aa8.01□□□□□ -1.13
VPS39-208ENST00000564994 CDS2O95674 445 aa8.01□□□□□ -1.13
VPS39-208ENST00000564994 TMEM50AO95807 157 aa8.01□□□□□ -1.13
VPS39-208ENST00000564994 APOHP02749 345 aaPredicted RBP8.01□□□□□ -1.13
VPS39-208ENST00000564994 SNCAP37840 140 aa8.01□□□□□ -1.13
VPS39-208ENST00000564994 MEF2DQ14814 521 aa8.01□□□□□ -1.13
VPS39-208ENST00000564994 ZNF124Q15973 351 aa8.01□□□□□ -1.13
VPS39-208ENST00000564994 MLANAQ16655 118 aa8.01□□□□□ -1.13
VPS39-208ENST00000564994 TOMM20LQ6UXN7 152 aa8.01□□□□□ -1.13
VPS39-208ENST00000564994 APRG1Q8IVJ8 170 aa8.01□□□□□ -1.13
VPS39-208ENST00000564994 LILRB2Q8N423 598 aa8.01□□□□□ -1.13
VPS39-208ENST00000564994 OR4C16Q8NGL9 310 aa8.01□□□□□ -1.13
VPS39-208ENST00000564994 GLYATL2Q8WU03 294 aa8.01□□□□□ -1.13
VPS39-208ENST00000564994 RAB2BQ8WUD1 216 aa8.01□□□□□ -1.13
VPS39-208ENST00000564994 DIRAS2Q96HU8 199 aa8.01□□□□□ -1.13
VPS39-208ENST00000564994 TMEM222Q9H0R3 208 aa8.01□□□□□ -1.13
VPS39-208ENST00000564994 FNDC4Q9H6D8 234 aaPredicted RBP8.01□□□□□ -1.13
VPS39-208ENST00000564994 NAA60Q9H7X0 242 aa8.01□□□□□ -1.13
VPS39-208ENST00000564994 ZFAND3Q9H8U3 227 aa8.01□□□□□ -1.13
VPS39-208ENST00000564994 CCDC59Q9P031 241 aaKnown RBP8.01□□□□□ -1.13
VPS39-208ENST00000564994 AGRNO00468 2067 aa8□□□□□ -1.13
VPS39-208ENST00000564994 IGKV3-7A0A075B6H7 116 aa8□□□□□ -1.13
VPS39-208ENST00000564994 TEX13DA0A0J9YY54 714 aaPredicted RBP8□□□□□ -1.13
VPS39-208ENST00000564994 A0A1B0GU03 582 aa8□□□□□ -1.13
VPS39-208ENST00000564994 DISC1C4P0D8 188 aa8□□□□□ -1.13
VPS39-208ENST00000564994 AKAIN1P0CW23 69 aa8□□□□□ -1.13
VPS39-208ENST00000564994 NPBWR1P48145 328 aa8□□□□□ -1.13
VPS39-208ENST00000564994 TFPI2P48307 235 aa8□□□□□ -1.13
VPS39-208ENST00000564994 HOXA1P49639 335 aaPredicted RBP8□□□□□ -1.13
VPS39-208ENST00000564994 APOC4P55056 127 aa8□□□□□ -1.13
VPS39-208ENST00000564994 TMBIM6P55061 237 aa8□□□□□ -1.13
VPS39-208ENST00000564994 EWSR1Q01844 656 aaKnown RBP eCLIP8□□□□□ -1.13
VPS39-208ENST00000564994 IL18Q14116 193 aa8□□□□□ -1.13
VPS39-208ENST00000564994 DEFB135Q30KP9 77 aa8□□□□□ -1.13
VPS39-208ENST00000564994 BSXQ3C1V8 233 aa8□□□□□ -1.13
VPS39-208ENST00000564994 AARDQ4LEZ3 155 aa8□□□□□ -1.13
VPS39-208ENST00000564994 Q6ZWC4 215 aa8□□□□□ -1.13
VPS39-208ENST00000564994 WFDC3Q8IUB2 231 aa8□□□□□ -1.13
VPS39-208ENST00000564994 SELENOHQ8IZQ5 122 aaKnown RBP8□□□□□ -1.13
VPS39-208ENST00000564994 DUSP18Q8NEJ0 188 aa8□□□□□ -1.13
VPS39-208ENST00000564994 IL17DQ8TAD2 202 aa8□□□□□ -1.13
VPS39-208ENST00000564994 ST8SIA2Q92186 375 aa8□□□□□ -1.13
VPS39-208ENST00000564994 RRNAD1Q96FB5 475 aaKnown RBP8□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms