RNA–Protein interactions for RNA: ENST00000545440.5

SNHG1-223, Transcript of small nucleolar RNA host gene 1, human

TSL 2 BASIC

Gene SNHG1, Length 754 nt, Biotype lincRNA, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SNHG1-223	ENST00000545440	SPCS2	Q15005	226 aa		5.8	□□□□□ -1.48
SNHG1-223	ENST00000545440	RNASE12	Q5GAN4	147 aa	Known RBP	5.8	□□□□□ -1.48
SNHG1-223	ENST00000545440	CLEC19A	Q6UXS0	136 aa		5.8	□□□□□ -1.48
SNHG1-223	ENST00000545440	ADAMTSL5	Q6ZMM2	481 aa		5.8	□□□□□ -1.48
SNHG1-223	ENST00000545440	SBSPON	Q8IVN8	264 aa		5.8	□□□□□ -1.48
SNHG1-223	ENST00000545440	OR10W1	Q8NGF6	305 aa		5.8	□□□□□ -1.48
SNHG1-223	ENST00000545440	OR1L6	Q8NGR2	347 aa		5.8	□□□□□ -1.48
SNHG1-223	ENST00000545440	OR52I2	Q8NH67	350 aa		5.8	□□□□□ -1.48
SNHG1-223	ENST00000545440	ZNF502	Q8TBZ5	544 aa		5.8	□□□□□ -1.48
SNHG1-223	ENST00000545440	VN1R17P	Q8TDU5	208 aa		5.8	□□□□□ -1.48
SNHG1-223	ENST00000545440	SEC22A	Q96IW7	307 aa		5.8	□□□□□ -1.48
SNHG1-223	ENST00000545440	ABHD1	Q96SE0	405 aa		5.8	□□□□□ -1.48
SNHG1-223	ENST00000545440	ATP6V0B	Q99437	205 aa		5.8	□□□□□ -1.48
SNHG1-223	ENST00000545440	ASCL2	Q99929	193 aa		5.8	□□□□□ -1.48
SNHG1-223	ENST00000545440	MIXL1	Q9H2W2	232 aa		5.8	□□□□□ -1.48
SNHG1-223	ENST00000545440	ZC4H2	Q9NQZ6	224 aa		5.8	□□□□□ -1.48
SNHG1-223	ENST00000545440	TECR	Q9NZ01	308 aa	Known RBP	5.8	□□□□□ -1.48
SNHG1-223	ENST00000545440	RABL2A	Q9UBK7	228 aa	Predicted RBP	5.8	□□□□□ -1.48
SNHG1-223	ENST00000545440	RABL2B	Q9UNT1	228 aa		5.8	□□□□□ -1.48
SNHG1-223	ENST00000545440	OR51B2	Q9Y5P1	312 aa		5.8	□□□□□ -1.48
SNHG1-223	ENST00000545440	F11R	Q9Y624	299 aa	Known RBP	5.8	□□□□□ -1.48
SNHG1-223	ENST00000545440	TMEM213	A2RRL7	107 aa		5.79	□□□□□ -1.48
SNHG1-223	ENST00000545440	IZUMO1R	A6ND01	250 aa		5.79	□□□□□ -1.48
SNHG1-223	ENST00000545440	RGS5	O15539	181 aa		5.79	□□□□□ -1.48
SNHG1-223	ENST00000545440	OR2C1	O95371	312 aa		5.79	□□□□□ -1.48
SNHG1-223	ENST00000545440	IGHV3-23	P01764	117 aa		5.79	□□□□□ -1.48
SNHG1-223	ENST00000545440	HLA-A	P01891	365 aa	Known RBP	5.79	□□□□□ -1.48
SNHG1-223	ENST00000545440	CD3D	P04234	171 aa		5.79	□□□□□ -1.48
SNHG1-223	ENST00000545440	HNRNPC	P07910	306 aa	Known RBP eCLIP	5.79	□□□□□ -1.48
SNHG1-223	ENST00000545440	FOLR2	P14207	255 aa		5.79	□□□□□ -1.48
SNHG1-223	ENST00000545440	GPR183	P32249	361 aa		5.79	□□□□□ -1.48
SNHG1-223	ENST00000545440	PIGP	P57054	158 aa		5.79	□□□□□ -1.48
SNHG1-223	ENST00000545440	FAM106A	Q4KMX7	169 aa		5.79	□□□□□ -1.48
SNHG1-223	ENST00000545440	FAM90A2P	Q658T7	463 aa		5.79	□□□□□ -1.48
SNHG1-223	ENST00000545440	TMEM88	Q6PEY1	159 aa		5.79	□□□□□ -1.48
SNHG1-223	ENST00000545440	H2BFWT	Q7Z2G1	175 aa		5.79	□□□□□ -1.48
SNHG1-223	ENST00000545440	CLVS1	Q8IUQ0	354 aa	Predicted RBP	5.79	□□□□□ -1.48
SNHG1-223	ENST00000545440	TMEM229B	Q8NBD8	167 aa		5.79	□□□□□ -1.48
SNHG1-223	ENST00000545440	ZNF114	Q8NC26	417 aa		5.79	□□□□□ -1.48
SNHG1-223	ENST00000545440	DYNC2LI1	Q8TCX1	351 aa		5.79	□□□□□ -1.48
SNHG1-223	ENST00000545440	SMIM4	Q8WVI0	70 aa		5.79	□□□□□ -1.48
SNHG1-223	ENST00000545440	GLMP	Q8WWB7	406 aa		5.79	□□□□□ -1.48
SNHG1-223	ENST00000545440	MRGPRF	Q96AM1	343 aa		5.79	□□□□□ -1.48
SNHG1-223	ENST00000545440	TMEM56	Q96MV1	263 aa		5.79	□□□□□ -1.48
SNHG1-223	ENST00000545440	RCHY1	Q96PM5	261 aa		5.79	□□□□□ -1.48
SNHG1-223	ENST00000545440	TM2D3	Q9BRN9	247 aa		5.79	□□□□□ -1.48
SNHG1-223	ENST00000545440	NSG2	Q9Y328	171 aa		5.79	□□□□□ -1.48
SNHG1-223	ENST00000545440		S4R3C0	116 aa		5.79	□□□□□ -1.48
SNHG1-223	ENST00000545440	HUWE1	Q7Z6Z7	4374 aa	Known RBP	5.78	□□□□□ -1.48
SNHG1-223	ENST00000545440	KRTAP9-1	A8MXZ3	250 aa	Predicted RBP	5.78	□□□□□ -1.48
SNHG1-223	ENST00000545440	CTDSPL	O15194	276 aa		5.78	□□□□□ -1.48
SNHG1-223	ENST00000545440	TGOLN2	O43493	480 aa		5.78	□□□□□ -1.48
SNHG1-223	ENST00000545440	NOL3	O60936	208 aa	Known RBP	5.78	□□□□□ -1.48
SNHG1-223	ENST00000545440	B3GALNT1	O75752	331 aa		5.78	□□□□□ -1.48
SNHG1-223	ENST00000545440	ATG12	O94817	140 aa		5.78	□□□□□ -1.48
SNHG1-223	ENST00000545440	RAB3D	O95716	219 aa		5.78	□□□□□ -1.48
SNHG1-223	ENST00000545440	IGKV1-39	P01597	117 aa		5.78	□□□□□ -1.48
SNHG1-223	ENST00000545440	IGKV1D-39	P04432	117 aa		5.78	□□□□□ -1.48
SNHG1-223	ENST00000545440	CLEC3B	P05452	202 aa		5.78	□□□□□ -1.48
SNHG1-223	ENST00000545440	PGAM2	P15259	253 aa		5.78	□□□□□ -1.48
SNHG1-223	ENST00000545440	CBLN1	P23435	193 aa		5.78	□□□□□ -1.48
SNHG1-223	ENST00000545440	RPL5	P46777	297 aa	Known RBP	5.78	□□□□□ -1.48
SNHG1-223	ENST00000545440	PPP5C	P53041	499 aa		5.78	□□□□□ -1.48
SNHG1-223	ENST00000545440	MFAP2	P55001	183 aa		5.78	□□□□□ -1.48
SNHG1-223	ENST00000545440	ELL	P55199	621 aa	Predicted RBP	5.78	□□□□□ -1.48
SNHG1-223	ENST00000545440	CD81	P60033	236 aa		5.78	□□□□□ -1.48
SNHG1-223	ENST00000545440	PRCD	Q00LT1	54 aa		5.78	□□□□□ -1.48
SNHG1-223	ENST00000545440	MEF2D	Q14814	521 aa		5.78	□□□□□ -1.48
SNHG1-223	ENST00000545440	DEFB114	Q30KQ6	69 aa		5.78	□□□□□ -1.48
SNHG1-223	ENST00000545440	DGAT2L7P	Q6IED9	249 aa		5.78	□□□□□ -1.48
SNHG1-223	ENST00000545440	STEAP1B	Q6NZ63	245 aa		5.78	□□□□□ -1.48
SNHG1-223	ENST00000545440	SPSB3	Q6PJ21	355 aa		5.78	□□□□□ -1.48
SNHG1-223	ENST00000545440	PLET1	Q6UQ28	207 aa		5.78	□□□□□ -1.48
SNHG1-223	ENST00000545440	CCDC71L	Q8N9Z2	235 aa		5.78	□□□□□ -1.48
SNHG1-223	ENST00000545440	OR4D10	Q8NGI6	311 aa		5.78	□□□□□ -1.48
SNHG1-223	ENST00000545440	OR13C8	Q8NGS7	320 aa		5.78	□□□□□ -1.48
SNHG1-223	ENST00000545440	OR1P1	Q8NH06	330 aa		5.78	□□□□□ -1.48
SNHG1-223	ENST00000545440	OR4A16	Q8NH70	328 aa		5.78	□□□□□ -1.48
SNHG1-223	ENST00000545440	TERB2	Q8NHR7	220 aa		5.78	□□□□□ -1.48
SNHG1-223	ENST00000545440	TMEM190	Q8WZ59	177 aa		5.78	□□□□□ -1.48
SNHG1-223	ENST00000545440	MARC2	Q969Z3	335 aa		5.78	□□□□□ -1.48
SNHG1-223	ENST00000545440	BSCL2	Q96G97	398 aa	Predicted RBP	5.78	□□□□□ -1.48
SNHG1-223	ENST00000545440	HINT2	Q9BX68	163 aa		5.78	□□□□□ -1.48
SNHG1-223	ENST00000545440	ZNF436	Q9C0F3	470 aa	Predicted RBP	5.78	□□□□□ -1.48
SNHG1-223	ENST00000545440	PALMD	Q9NP74	551 aa		5.78	□□□□□ -1.48
SNHG1-223	ENST00000545440	SLC2A8	Q9NY64	477 aa		5.78	□□□□□ -1.48
SNHG1-223	ENST00000545440	ZNF320	A2RRD8	509 aa		5.77	□□□□□ -1.49
SNHG1-223	ENST00000545440		H3BMQ9	156 aa		5.77	□□□□□ -1.49
SNHG1-223	ENST00000545440		K7EIM0	57 aa		5.77	□□□□□ -1.49
SNHG1-223	ENST00000545440	CTDSP2	O14595	271 aa		5.77	□□□□□ -1.49
SNHG1-223	ENST00000545440	CTSD	P07339	412 aa	Predicted RBP	5.77	□□□□□ -1.49
SNHG1-223	ENST00000545440		P0C879	139 aa		5.77	□□□□□ -1.49
SNHG1-223	ENST00000545440	C8orf88	P0DMB2	117 aa		5.77	□□□□□ -1.49
SNHG1-223	ENST00000545440	EDN2	P20800	178 aa		5.77	□□□□□ -1.49
SNHG1-223	ENST00000545440	UCP1	P25874	307 aa		5.77	□□□□□ -1.49
SNHG1-223	ENST00000545440	FCGR2B	P31994	310 aa	Predicted RBP	5.77	□□□□□ -1.49
SNHG1-223	ENST00000545440	AKR1C2	P52895	323 aa		5.77	□□□□□ -1.49
SNHG1-223	ENST00000545440	IL18	Q14116	193 aa		5.77	□□□□□ -1.49
SNHG1-223	ENST00000545440	SURF2	Q15527	256 aa	Predicted RBP	5.77	□□□□□ -1.49
SNHG1-223	ENST00000545440	SCGB2B2	Q4G0G5	96 aa		5.77	□□□□□ -1.49

Retrieved 100 of 20,778 RNA–protein pairs in 59 ms