RNA–Protein interactions for RNA: ENST00000509277.5

LIMCH1-209, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2 BASIC

Gene LIMCH1, Length 3,474 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-209ENST00000509277 UNC79Q9P2D8 2635 aa7.15□□□□□ -1.26
LIMCH1-209ENST00000509277 ZANQ9Y493 2812 aa7.15□□□□□ -1.27
LIMCH1-209ENST00000509277 SRRM5B3KS81 715 aa7.15□□□□□ -1.27
LIMCH1-209ENST00000509277 NDUFB3O43676 98 aa7.15□□□□□ -1.27
LIMCH1-209ENST00000509277 ACTL6BO94805 426 aa7.15□□□□□ -1.27
LIMCH1-209ENST00000509277 NAPSAO96009 420 aa7.15□□□□□ -1.27
LIMCH1-209ENST00000509277 ATP5G3P48201 142 aa7.15□□□□□ -1.27
LIMCH1-209ENST00000509277 LCN2P80188 198 aa7.15□□□□□ -1.27
LIMCH1-209ENST00000509277 MPV17L2Q567V2 206 aa7.15□□□□□ -1.27
LIMCH1-209ENST00000509277 GCSAMLQ5JQS6 135 aa7.15□□□□□ -1.27
LIMCH1-209ENST00000509277 C20orf204Q6ZNR8 217 aa7.15□□□□□ -1.27
LIMCH1-209ENST00000509277 LYPD6Q86Y78 171 aa7.15□□□□□ -1.27
LIMCH1-209ENST00000509277 OR8I2Q8N0Y5 310 aa7.15□□□□□ -1.27
LIMCH1-209ENST00000509277 OR10G4Q8NGN3 311 aa7.15□□□□□ -1.27
LIMCH1-209ENST00000509277 OR10G9Q8NGN4 311 aa7.15□□□□□ -1.27
LIMCH1-209ENST00000509277 OR10G7Q8NGN6 311 aa7.15□□□□□ -1.27
LIMCH1-209ENST00000509277 PPP1R35Q8TAP8 253 aa7.15□□□□□ -1.27
LIMCH1-209ENST00000509277 RAB1CQ92928 201 aa7.15□□□□□ -1.27
LIMCH1-209ENST00000509277 GTSF1LQ9H1H1 148 aa7.15□□□□□ -1.27
LIMCH1-209ENST00000509277 ONECUT1Q9UBC0 465 aa7.15□□□□□ -1.27
LIMCH1-209ENST00000509277 SLC25A10Q9UBX3 287 aaPredicted RBP7.15□□□□□ -1.27
LIMCH1-209ENST00000509277 CLN8Q9UBY8 286 aa7.15□□□□□ -1.27
LIMCH1-209ENST00000509277 SVEP1Q4LDE5 3571 aa7.15□□□□□ -1.27
LIMCH1-209ENST00000509277 RAI1Q7Z5J4 1906 aaPredicted RBP7.14□□□□□ -1.27
LIMCH1-209ENST00000509277 APCP25054 2843 aa7.14□□□□□ -1.27
LIMCH1-209ENST00000509277 TMEM178BH3BS89 294 aa7.14□□□□□ -1.27
LIMCH1-209ENST00000509277 K7ERU9 68 aa7.14□□□□□ -1.27
LIMCH1-209ENST00000509277 MPPED1O15442 326 aa7.14□□□□□ -1.27
LIMCH1-209ENST00000509277 CCL3L1P16619 93 aa7.14□□□□□ -1.27
LIMCH1-209ENST00000509277 RANP62826 216 aaKnown RBP7.14□□□□□ -1.27
LIMCH1-209ENST00000509277 SLC24A4Q8NFF2 622 aa7.14□□□□□ -1.27
LIMCH1-209ENST00000509277 NINJ1Q92982 152 aa7.14□□□□□ -1.27
LIMCH1-209ENST00000509277 CST9LQ9H4G1 147 aa7.14□□□□□ -1.27
LIMCH1-209ENST00000509277 FNDC4Q9H6D8 234 aaPredicted RBP7.14□□□□□ -1.27
LIMCH1-209ENST00000509277 FBXL7Q9UJT9 491 aa7.14□□□□□ -1.27
LIMCH1-209ENST00000509277 ITPR3Q14573 2671 aa7.14□□□□□ -1.27
LIMCH1-209ENST00000509277 IGHV3OR16-10A0A075B7F0 116 aa7.14□□□□□ -1.27
LIMCH1-209ENST00000509277 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP7.14□□□□□ -1.27
LIMCH1-209ENST00000509277 BMPR1BO00238 502 aa7.14□□□□□ -1.27
LIMCH1-209ENST00000509277 SMAD7O15105 426 aaKnown RBP7.14□□□□□ -1.27
LIMCH1-209ENST00000509277 PPYP01298 95 aa7.14□□□□□ -1.27
LIMCH1-209ENST00000509277 LOXP28300 417 aaPredicted RBP7.14□□□□□ -1.27
LIMCH1-209ENST00000509277 OR4C12Q96R67 309 aa7.14□□□□□ -1.27
LIMCH1-209ENST00000509277 CTDSP1Q9GZU7 261 aa7.14□□□□□ -1.27
LIMCH1-209ENST00000509277 BAHCC1Q9P281 2608 aa7.14□□□□□ -1.27
LIMCH1-209ENST00000509277 FBN2P35556 2912 aa7.14□□□□□ -1.27
LIMCH1-209ENST00000509277 COX7A1P24310 79 aa7.14□□□□□ -1.27
LIMCH1-209ENST00000509277 RPL31P62899 125 aaKnown RBP7.14□□□□□ -1.27
LIMCH1-209ENST00000509277 ACSM6Q6P461 480 aa7.14□□□□□ -1.27
LIMCH1-209ENST00000509277 OR1L1Q8NH94 360 aa7.14□□□□□ -1.27
LIMCH1-209ENST00000509277 CEACAM18A8MTB9 384 aa7.13□□□□□ -1.27
LIMCH1-209ENST00000509277 SERPINE3A8MV23 424 aa7.13□□□□□ -1.27
LIMCH1-209ENST00000509277 CA1P00915 261 aaPredicted RBP7.13□□□□□ -1.27
LIMCH1-209ENST00000509277 CSN3P07498 182 aa7.13□□□□□ -1.27
LIMCH1-209ENST00000509277 PFN1P07737 140 aaKnown RBP7.13□□□□□ -1.27
LIMCH1-209ENST00000509277 SRIP30626 198 aa7.13□□□□□ -1.27
LIMCH1-209ENST00000509277 ZNF816Q0VGE8 651 aaPredicted RBP7.13□□□□□ -1.27
LIMCH1-209ENST00000509277 HLA-DRB5Q30154 266 aa7.13□□□□□ -1.27
LIMCH1-209ENST00000509277 OCIAD2Q56VL3 154 aa7.13□□□□□ -1.27
LIMCH1-209ENST00000509277 LRRC10Q5BKY1 277 aa7.13□□□□□ -1.27
LIMCH1-209ENST00000509277 OR52L2PQ8NGH6 319 aa7.13□□□□□ -1.27
LIMCH1-209ENST00000509277 OR13A1Q8NGR1 328 aa7.13□□□□□ -1.27
LIMCH1-209ENST00000509277 CORO2AQ92828 525 aa7.13□□□□□ -1.27
LIMCH1-209ENST00000509277 SGK494Q96LW2 274 aa7.13□□□□□ -1.27
LIMCH1-209ENST00000509277 YPEL4Q96NS1 127 aa7.13□□□□□ -1.27
LIMCH1-209ENST00000509277 WDR61Q9GZS3 305 aaKnown RBP7.13□□□□□ -1.27
LIMCH1-209ENST00000509277 CELSR1Q9NYQ6 3014 aa7.13□□□□□ -1.27
LIMCH1-209ENST00000509277 PITX3O75364 302 aa7.13□□□□□ -1.27
LIMCH1-209ENST00000509277 HYPMO75409 117 aa7.13□□□□□ -1.27
LIMCH1-209ENST00000509277 NDUFB8O95169 186 aa7.13□□□□□ -1.27
LIMCH1-209ENST00000509277 SLC25A6P12236 298 aa7.13□□□□□ -1.27
LIMCH1-209ENST00000509277 STUMQ69YW2 141 aa7.13□□□□□ -1.27
LIMCH1-209ENST00000509277 Q6ZSR3 168 aa7.13□□□□□ -1.27
LIMCH1-209ENST00000509277 TCTEX1D1Q8N7M0 179 aa7.13□□□□□ -1.27
LIMCH1-209ENST00000509277 IGFBPL1Q8WX77 278 aa7.13□□□□□ -1.27
LIMCH1-209ENST00000509277 MOB3AQ96BX8 217 aa7.13□□□□□ -1.27
LIMCH1-209ENST00000509277 OR1A1Q9P1Q5 309 aa7.13□□□□□ -1.27
LIMCH1-209ENST00000509277 FLNAP21333 2647 aaKnown RBP7.13□□□□□ -1.27
LIMCH1-209ENST00000509277 TMEM30CPA0ZSE6 113 aa7.13□□□□□ -1.27
LIMCH1-209ENST00000509277 KBTBD11O94819 623 aa7.13□□□□□ -1.27
LIMCH1-209ENST00000509277 IGHV4-39P01824 125 aa7.13□□□□□ -1.27
LIMCH1-209ENST00000509277 CD99P14209 185 aa7.13□□□□□ -1.27
LIMCH1-209ENST00000509277 USF1P22415 310 aaPredicted RBP7.13□□□□□ -1.27
LIMCH1-209ENST00000509277 ARF6P62330 175 aa7.13□□□□□ -1.27
LIMCH1-209ENST00000509277 SELENOTP62341 195 aa7.13□□□□□ -1.27
LIMCH1-209ENST00000509277 HBG1P69891 147 aa7.13□□□□□ -1.27
LIMCH1-209ENST00000509277 HBG2P69892 147 aa7.13□□□□□ -1.27
LIMCH1-209ENST00000509277 GAGE1Q13065 139 aa7.13□□□□□ -1.27
LIMCH1-209ENST00000509277 EFNB3Q15768 340 aa7.13□□□□□ -1.27
LIMCH1-209ENST00000509277 NIT1Q86X76 327 aa7.13□□□□□ -1.27
LIMCH1-209ENST00000509277 ZNF295-AS1Q8N0V1 137 aa7.13□□□□□ -1.27
LIMCH1-209ENST00000509277 TMEM116Q8NCL8 245 aa7.13□□□□□ -1.27
LIMCH1-209ENST00000509277 FAM168AQ92567 244 aa7.13□□□□□ -1.27
LIMCH1-209ENST00000509277 NEIL1Q96FI4 390 aaPredicted RBP7.13□□□□□ -1.27
LIMCH1-209ENST00000509277 CHRDL1Q9BU40 450 aa7.13□□□□□ -1.27
LIMCH1-209ENST00000509277 SSBP3Q9BWW4 388 aaPredicted RBP7.13□□□□□ -1.27
LIMCH1-209ENST00000509277 ZNRD1Q9P1U0 126 aa7.13□□□□□ -1.27
LIMCH1-209ENST00000509277 HILPDAQ9Y5L2 63 aa7.13□□□□□ -1.27
LIMCH1-209ENST00000509277 RNF212BA8MTL3 300 aa7.12□□□□□ -1.27
LIMCH1-209ENST00000509277 ITGB1BP1O14713 200 aa7.12□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 69.4 ms