RNA–Protein interactions for RNA: ENST00000504120.3

PCDHA1-203, Transcript of protocadherin alpha 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PCDHA1, Length 5,263 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA1-203ENST00000504120 CHD5Q8TDI0 1954 aa13.8□□□□□ -0.2
PCDHA1-203ENST00000504120 RPL23P62829 140 aaKnown RBP13.8□□□□□ -0.2
PCDHA1-203ENST00000504120 A0A0A6YYD4 124 aa13.8□□□□□ -0.2
PCDHA1-203ENST00000504120 MST1P26927 711 aa13.8□□□□□ -0.2
PCDHA1-203ENST00000504120 CLEC19AQ6UXS0 136 aa13.8□□□□□ -0.2
PCDHA1-203ENST00000504120 IMMP2LQ96T52 175 aa13.8□□□□□ -0.2
PCDHA1-203ENST00000504120 TMEM160Q9NX00 188 aa13.8□□□□□ -0.2
PCDHA1-203ENST00000504120 CCL20P78556 96 aa13.8□□□□□ -0.2
PCDHA1-203ENST00000504120 PSMG4Q5JS54 123 aa13.8□□□□□ -0.2
PCDHA1-203ENST00000504120 PVRIGQ6DKI7 326 aa13.8□□□□□ -0.2
PCDHA1-203ENST00000504120 PINLYPA6NC86 204 aa13.8□□□□□ -0.2
PCDHA1-203ENST00000504120 SPRR3Q9UBC9 169 aa13.8□□□□□ -0.2
PCDHA1-203ENST00000504120 IGHV1-18A0A0C4DH31 117 aa13.79□□□□□ -0.2
PCDHA1-203ENST00000504120 TNFRSF18Q9Y5U5 241 aa13.79□□□□□ -0.2
PCDHA1-203ENST00000504120 H0YIZ8 118 aa13.79□□□□□ -0.2
PCDHA1-203ENST00000504120 ARL6IP6Q8N6S5 226 aa13.79□□□□□ -0.2
PCDHA1-203ENST00000504120 C7orf69Q9H7B7 122 aa13.79□□□□□ -0.2
PCDHA1-203ENST00000504120 FER1L6-AS1Q8NA97 138 aa13.79□□□□□ -0.2
PCDHA1-203ENST00000504120 PAX1P15863 534 aa13.79□□□□□ -0.2
PCDHA1-203ENST00000504120 RAMP3O60896 148 aa13.78□□□□□ -0.2
PCDHA1-203ENST00000504120 SMIM13P0DJ93 91 aa13.78□□□□□ -0.2
PCDHA1-203ENST00000504120 C17orf82Q86X59 251 aaPredicted RBP13.78□□□□□ -0.2
PCDHA1-203ENST00000504120 SCN2AQ99250 2005 aa13.78□□□□□ -0.2
PCDHA1-203ENST00000504120 FGF16O43320 207 aa13.78□□□□□ -0.2
PCDHA1-203ENST00000504120 EFNA2O43921 213 aa13.78□□□□□ -0.2
PCDHA1-203ENST00000504120 DUTP33316 252 aaKnown RBP13.78□□□□□ -0.2
PCDHA1-203ENST00000504120 SUMO2P61956 95 aaKnown RBP13.78□□□□□ -0.2
PCDHA1-203ENST00000504120 PRCDQ00LT1 54 aa13.78□□□□□ -0.2
PCDHA1-203ENST00000504120 TMEM170BQ5T4T1 132 aa13.78□□□□□ -0.2
PCDHA1-203ENST00000504120 NUP37Q8NFH4 326 aa13.78□□□□□ -0.2
PCDHA1-203ENST00000504120 ORMDL3Q8N138 153 aa13.77□□□□□ -0.2
PCDHA1-203ENST00000504120 FGFBP3Q8TAT2 258 aa13.77□□□□□ -0.2
PCDHA1-203ENST00000504120 C18orf15Q96N68 181 aa13.77□□□□□ -0.2
PCDHA1-203ENST00000504120 DOCK6Q96HP0 2047 aa13.77□□□□□ -0.2
PCDHA1-203ENST00000504120 CTAG1AP78358 180 aa13.77□□□□□ -0.21
PCDHA1-203ENST00000504120 IGKV1D-8A0A087WSZ0 117 aa13.77□□□□□ -0.21
PCDHA1-203ENST00000504120 TRAV8-6A0A0B4J262 113 aa13.77□□□□□ -0.21
PCDHA1-203ENST00000504120 HOXA5P20719 270 aa13.77□□□□□ -0.21
PCDHA1-203ENST00000504120 ATRAIDQ6UW56 229 aa13.77□□□□□ -0.21
PCDHA1-203ENST00000504120 OR4X2Q8NGF9 303 aa13.77□□□□□ -0.21
PCDHA1-203ENST00000504120 NABP1Q96AH0 204 aa13.77□□□□□ -0.21
PCDHA1-203ENST00000504120 SLC50A1Q9BRV3 221 aa13.77□□□□□ -0.21
PCDHA1-203ENST00000504120 A0A1W2PRE2 83 aa13.77□□□□□ -0.21
PCDHA1-203ENST00000504120 TCRBV4S1A1TA0A5B7 111 aa13.77□□□□□ -0.21
PCDHA1-203ENST00000504120 HIGD1CA8MV81 97 aa13.77□□□□□ -0.21
PCDHA1-203ENST00000504120 GGNQ86UU5 652 aa13.77□□□□□ -0.21
PCDHA1-203ENST00000504120 SCGB3A1Q96QR1 104 aa13.77□□□□□ -0.21
PCDHA1-203ENST00000504120 PEF1Q9UBV8 284 aaKnown RBP13.77□□□□□ -0.21
PCDHA1-203ENST00000504120 TMEM101Q96IK0 257 aa13.76□□□□□ -0.21
PCDHA1-203ENST00000504120 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP13.76□□□□□ -0.21
PCDHA1-203ENST00000504120 SCGB1A1P11684 91 aa13.76□□□□□ -0.21
PCDHA1-203ENST00000504120 NEUROG1Q92886 237 aa13.76□□□□□ -0.21
PCDHA1-203ENST00000504120 TNFRSF14Q92956 283 aa13.76□□□□□ -0.21
PCDHA1-203ENST00000504120 ALKBH7Q9BT30 221 aaPredicted RBP13.76□□□□□ -0.21
PCDHA1-203ENST00000504120 IGKV1-12A0A0C4DH73 117 aa13.76□□□□□ -0.21
PCDHA1-203ENST00000504120 IGKV1D-12P01611 117 aa13.76□□□□□ -0.21
PCDHA1-203ENST00000504120 TTC9CQ8N5M4 171 aa13.76□□□□□ -0.21
PCDHA1-203ENST00000504120 MESP1Q9BRJ9 268 aa13.76□□□□□ -0.21
PCDHA1-203ENST00000504120 E9PLN8 166 aa13.76□□□□□ -0.21
PCDHA1-203ENST00000504120 TCF23Q7RTU1 214 aa13.76□□□□□ -0.21
PCDHA1-203ENST00000504120 ASCL2Q99929 193 aa13.76□□□□□ -0.21
PCDHA1-203ENST00000504120 VKORC1Q9BQB6 163 aa13.76□□□□□ -0.21
PCDHA1-203ENST00000504120 ASXL3Q9C0F0 2248 aa13.76□□□□□ -0.21
PCDHA1-203ENST00000504120 IGKV3OR2-268A0A0C4DH90 116 aa13.75□□□□□ -0.21
PCDHA1-203ENST00000504120 SMAD7O15105 426 aaKnown RBP13.75□□□□□ -0.21
PCDHA1-203ENST00000504120 CDKN1AP38936 164 aa13.75□□□□□ -0.21
PCDHA1-203ENST00000504120 RNF125Q96EQ8 232 aa13.75□□□□□ -0.21
PCDHA1-203ENST00000504120 ALPK2Q86TB3 2170 aa13.75□□□□□ -0.21
PCDHA1-203ENST00000504120 CD55P08174 381 aa13.75□□□□□ -0.21
PCDHA1-203ENST00000504120 WDR83OSQ9Y284 106 aa13.75□□□□□ -0.21
PCDHA1-203ENST00000504120 FABP5P3A8MUU1 101 aa13.75□□□□□ -0.21
PCDHA1-203ENST00000504120 CD59P13987 128 aa13.75□□□□□ -0.21
PCDHA1-203ENST00000504120 EPDR1Q9UM22 224 aa13.75□□□□□ -0.21
PCDHA1-203ENST00000504120 LEMD1Q68G75 181 aa13.75□□□□□ -0.21
PCDHA1-203ENST00000504120 TMEM170AQ8WVE7 144 aa13.75□□□□□ -0.21
PCDHA1-203ENST00000504120 DUX3Q96PT4 197 aa13.75□□□□□ -0.21
PCDHA1-203ENST00000504120 OSTCQ9NRP0 149 aa13.75□□□□□ -0.21
PCDHA1-203ENST00000504120 OR9G9P0C7N8 305 aa13.74□□□□□ -0.21
PCDHA1-203ENST00000504120 LHFPL1Q86WI0 220 aa13.74□□□□□ -0.21
PCDHA1-203ENST00000504120 DMRTA2Q96SC8 542 aa13.74□□□□□ -0.21
PCDHA1-203ENST00000504120 DOCK4Q8N1I0 1966 aa13.74□□□□□ -0.21
PCDHA1-203ENST00000504120 IGHV1-46P01743 117 aa13.74□□□□□ -0.21
PCDHA1-203ENST00000504120 IGHV3OR16-8A0A075B7F1 116 aa13.74□□□□□ -0.21
PCDHA1-203ENST00000504120 MYOD1P15172 320 aa13.74□□□□□ -0.21
PCDHA1-203ENST00000504120 MBD3L1Q8WWY6 194 aa13.74□□□□□ -0.21
PCDHA1-203ENST00000504120 C1QTNF9BB2RNN3 333 aa13.74□□□□□ -0.21
PCDHA1-203ENST00000504120 TGFAP01135 160 aa13.74□□□□□ -0.21
PCDHA1-203ENST00000504120 THBDP07204 575 aa13.74□□□□□ -0.21
PCDHA1-203ENST00000504120 ITLN2Q8WWU7 325 aaPredicted RBP13.74□□□□□ -0.21
PCDHA1-203ENST00000504120 C2orf88Q9BSF0 95 aa13.74□□□□□ -0.21
PCDHA1-203ENST00000504120 MUC21A0A0G2JKD1 596 aa13.73□□□□□ -0.21
PCDHA1-203ENST00000504120 MUC21A0A140T8X8 626 aa13.73□□□□□ -0.21
PCDHA1-203ENST00000504120 RNASE4P34096 147 aaKnown RBP13.73□□□□□ -0.21
PCDHA1-203ENST00000504120 TIMP3P35625 211 aa13.73□□□□□ -0.21
PCDHA1-203ENST00000504120 GCSAMLQ5JQS6 135 aa13.73□□□□□ -0.21
PCDHA1-203ENST00000504120 MUC21Q5SSG8 566 aa13.73□□□□□ -0.21
PCDHA1-203ENST00000504120 ZNF600Q6ZNG1 722 aa13.73□□□□□ -0.21
PCDHA1-203ENST00000504120 FOXC2Q99958 501 aa13.73□□□□□ -0.21
PCDHA1-203ENST00000504120 PLSCR4Q9NRQ2 329 aa13.73□□□□□ -0.21
PCDHA1-203ENST00000504120 PEMTQ9UBM1 199 aa13.73□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 103.6 ms