RNA–Protein interactions for RNA: ENST00000377797.7

TCOF1-202, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 5,095 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-202ENST00000377797 KLHDC1Q8N7A1 406 aa11.94□□□□□ -0.5
TCOF1-202ENST00000377797 RNASEH2CQ8TDP1 164 aaKnown RBP11.94□□□□□ -0.5
TCOF1-202ENST00000377797 MKI67P46013 3256 aaKnown RBP11.94□□□□□ -0.5
TCOF1-202ENST00000377797 LRP4O75096 1905 aa11.93□□□□□ -0.5
TCOF1-202ENST00000377797 TGFAP01135 160 aa11.93□□□□□ -0.5
TCOF1-202ENST00000377797 DUX4L9Q6RFH8 374 aaPredicted RBP11.93□□□□□ -0.5
TCOF1-202ENST00000377797 TOMM20LQ6UXN7 152 aa11.93□□□□□ -0.5
TCOF1-202ENST00000377797 OR10W1Q8NGF6 305 aa11.93□□□□□ -0.5
TCOF1-202ENST00000377797 AUP1Q9Y679 476 aa11.93□□□□□ -0.5
TCOF1-202ENST00000377797 ARL2-SNX15V9GYD0 113 aa11.93□□□□□ -0.5
TCOF1-202ENST00000377797 EIF4E3Q8N5X7 224 aaKnown RBP11.93□□□□□ -0.5
TCOF1-202ENST00000377797 FUT9Q9Y231 359 aa11.93□□□□□ -0.5
TCOF1-202ENST00000377797 BMPR1BO00238 502 aa11.93□□□□□ -0.5
TCOF1-202ENST00000377797 ZNF600Q6ZNG1 722 aa11.93□□□□□ -0.5
TCOF1-202ENST00000377797 MRPL32Q9BYC8 188 aaKnown RBP11.93□□□□□ -0.5
TCOF1-202ENST00000377797 BET1LQ9NYM9 111 aa11.93□□□□□ -0.5
TCOF1-202ENST00000377797 WDR83OSQ9Y284 106 aa11.93□□□□□ -0.5
TCOF1-202ENST00000377797 FOXI3A8MTJ6 420 aaPredicted RBP11.93□□□□□ -0.5
TCOF1-202ENST00000377797 SEM1Q6ZVN7 128 aa11.93□□□□□ -0.5
TCOF1-202ENST00000377797 LINC00305Q7Z4B0 112 aa11.93□□□□□ -0.5
TCOF1-202ENST00000377797 OR52E5Q8NH55 327 aa11.93□□□□□ -0.5
TCOF1-202ENST00000377797 VAMP8Q9BV40 100 aa11.93□□□□□ -0.5
TCOF1-202ENST00000377797 HIST1H1EP10412 219 aaKnown RBP11.92□□□□□ -0.5
TCOF1-202ENST00000377797 SLC25A48Q6ZT89 311 aaKnown RBP11.92□□□□□ -0.5
TCOF1-202ENST00000377797 PRNTQ86SH4 94 aa11.92□□□□□ -0.5
TCOF1-202ENST00000377797 CYYR1Q96J86 154 aa11.92□□□□□ -0.5
TCOF1-202ENST00000377797 WNT10AQ9GZT5 417 aa11.92□□□□□ -0.5
TCOF1-202ENST00000377797 RABAC1Q9UI14 185 aa11.92□□□□□ -0.5
TCOF1-202ENST00000377797 NAGKQ9UJ70 344 aa11.92□□□□□ -0.5
TCOF1-202ENST00000377797 CSPG4Q6UVK1 2322 aa11.92□□□□□ -0.5
TCOF1-202ENST00000377797 CBY3A6NI87 242 aa11.92□□□□□ -0.5
TCOF1-202ENST00000377797 WDR73Q6P4I2 378 aa11.92□□□□□ -0.5
TCOF1-202ENST00000377797 TEX45Q8NA69 505 aa11.92□□□□□ -0.5
TCOF1-202ENST00000377797 ARPC1AQ92747 370 aa11.92□□□□□ -0.5
TCOF1-202ENST00000377797 TEX50A0A1B0GTY4 177 aa11.92□□□□□ -0.5
TCOF1-202ENST00000377797 SRP19P09132 144 aaKnown RBP11.92□□□□□ -0.5
TCOF1-202ENST00000377797 Q8TCH9 128 aa11.92□□□□□ -0.5
TCOF1-202ENST00000377797 SGK494Q96LW2 274 aa11.92□□□□□ -0.5
TCOF1-202ENST00000377797 SMIM6P0DI80 62 aa11.91□□□□□ -0.5
TCOF1-202ENST00000377797 SRSF3P84103 164 aaKnown RBP11.91□□□□□ -0.5
TCOF1-202ENST00000377797 FAM162BQ5T6X4 162 aa11.91□□□□□ -0.5
TCOF1-202ENST00000377797 ZNRD1Q9P1U0 126 aa11.91□□□□□ -0.5
TCOF1-202ENST00000377797 MED12LQ86YW9 2145 aa11.91□□□□□ -0.5
TCOF1-202ENST00000377797 ATRAIDQ6UW56 229 aa11.91□□□□□ -0.5
TCOF1-202ENST00000377797 SRD5A3Q9H8P0 318 aa11.91□□□□□ -0.5
TCOF1-202ENST00000377797 CARHSP1Q9Y2V2 147 aaKnown RBP11.91□□□□□ -0.5
TCOF1-202ENST00000377797 SEC14L6B5MCN3 397 aa11.91□□□□□ -0.5
TCOF1-202ENST00000377797 PMCHP20382 165 aa11.91□□□□□ -0.5
TCOF1-202ENST00000377797 HNRNPA3P51991 378 aaKnown RBP11.91□□□□□ -0.5
TCOF1-202ENST00000377797 FAM3BP58499 235 aaPredicted RBP11.91□□□□□ -0.5
TCOF1-202ENST00000377797 CD69Q07108 199 aa11.91□□□□□ -0.5
TCOF1-202ENST00000377797 FOXA2Q9Y261 457 aaPredicted RBP11.91□□□□□ -0.5
TCOF1-202ENST00000377797 RFNGQ9Y644 331 aa11.91□□□□□ -0.5
TCOF1-202ENST00000377797 J3KRW8 73 aa11.91□□□□□ -0.5
TCOF1-202ENST00000377797 ORM1P02763 201 aa11.91□□□□□ -0.5
TCOF1-202ENST00000377797 IER3P46695 156 aa11.91□□□□□ -0.5
TCOF1-202ENST00000377797 SLC35B1P78383 322 aa11.91□□□□□ -0.5
TCOF1-202ENST00000377797 CCL20P78556 96 aa11.91□□□□□ -0.5
TCOF1-202ENST00000377797 KLRD1Q13241 179 aa11.91□□□□□ -0.5
TCOF1-202ENST00000377797 TMEM14EPQ6UXP3 125 aa11.91□□□□□ -0.5
TCOF1-202ENST00000377797 WFDC3Q8IUB2 231 aa11.91□□□□□ -0.5
TCOF1-202ENST00000377797 CLDND2Q8NHS1 167 aa11.91□□□□□ -0.5
TCOF1-202ENST00000377797 METTL26Q96S19 204 aa11.91□□□□□ -0.5
TCOF1-202ENST00000377797 SPTBN4Q9H254 2564 aa11.9□□□□□ -0.5
TCOF1-202ENST00000377797 TMEM8BA6NDV4 472 aa11.9□□□□□ -0.5
TCOF1-202ENST00000377797 ZNF257Q9Y2Q1 563 aa11.9□□□□□ -0.5
TCOF1-202ENST00000377797 ANKRD11Q6UB99 2663 aaPredicted RBP11.9□□□□□ -0.5
TCOF1-202ENST00000377797 TMSB15BA0A087X1C1 80 aa11.9□□□□□ -0.5
TCOF1-202ENST00000377797 IGHV3-23P01764 117 aa11.9□□□□□ -0.5
TCOF1-202ENST00000377797 CRISP2P16562 243 aa11.9□□□□□ -0.5
TCOF1-202ENST00000377797 RPL29P47914 159 aaKnown RBP11.9□□□□□ -0.5
TCOF1-202ENST00000377797 C21orf62Q9NYP8 219 aa11.9□□□□□ -0.5
TCOF1-202ENST00000377797 FBXL7Q9UJT9 491 aa11.9□□□□□ -0.5
TCOF1-202ENST00000377797 WNT2P09544 360 aa11.9□□□□□ -0.5
TCOF1-202ENST00000377797 GPX4P36969 197 aaPredicted RBP11.9□□□□□ -0.5
TCOF1-202ENST00000377797 C11orf53Q8IXP5 236 aa11.9□□□□□ -0.5
TCOF1-202ENST00000377797 SNURFLB1AK76 121 aa11.9□□□□□ -0.51
TCOF1-202ENST00000377797 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP11.9□□□□□ -0.51
TCOF1-202ENST00000377797 IGKV1-16P04430 117 aa11.9□□□□□ -0.51
TCOF1-202ENST00000377797 LYL1P12980 280 aa11.9□□□□□ -0.51
TCOF1-202ENST00000377797 MYOD1P15172 320 aa11.9□□□□□ -0.51
TCOF1-202ENST00000377797 RELBQ01201 579 aa11.9□□□□□ -0.51
TCOF1-202ENST00000377797 MIR17HGQ75NE6 70 aa11.9□□□□□ -0.51
TCOF1-202ENST00000377797 OR2D3Q8NGH3 330 aa11.9□□□□□ -0.51
TCOF1-202ENST00000377797 VSIRQ9H7M9 311 aa11.9□□□□□ -0.51
TCOF1-202ENST00000377797 IGHV1-3A0A0C4DH29 117 aa11.89□□□□□ -0.51
TCOF1-202ENST00000377797 RPL7P18124 248 aaKnown RBP11.89□□□□□ -0.51
TCOF1-202ENST00000377797 ATP5G2Q06055 141 aa11.89□□□□□ -0.51
TCOF1-202ENST00000377797 GCSAMLQ5JQS6 135 aa11.89□□□□□ -0.51
TCOF1-202ENST00000377797 NOL4LQ96MY1 436 aaPredicted RBP11.89□□□□□ -0.51
TCOF1-202ENST00000377797 SLC25A33Q9BSK2 321 aa11.89□□□□□ -0.51
TCOF1-202ENST00000377797 IGHV3OR16-13A0A075B7E8 117 aa11.89□□□□□ -0.51
TCOF1-202ENST00000377797 IGHV3-74A0A0B4J1X5 117 aa11.89□□□□□ -0.51
TCOF1-202ENST00000377797 H0YJW9 148 aa11.89□□□□□ -0.51
TCOF1-202ENST00000377797 GRNP28799 593 aaKnown RBP11.89□□□□□ -0.51
TCOF1-202ENST00000377797 MAS1LP35410 378 aa11.89□□□□□ -0.51
TCOF1-202ENST00000377797 PMS2P11Q13670 270 aa11.89□□□□□ -0.51
TCOF1-202ENST00000377797 COX19Q49B96 90 aa11.89□□□□□ -0.51
TCOF1-202ENST00000377797 IBA57Q5T440 356 aaKnown RBP11.89□□□□□ -0.51
TCOF1-202ENST00000377797 NHLRC2Q8NBF2 726 aa11.89□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 117.1 ms