RNA–Protein interactions for RNA: ENST00000374876.4

CCDC40-202, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best) BASIC

Gene CCDC40, Length 2,010 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-202ENST00000374876 NDUFS8O00217 210 aa12.57□□□□□ -0.4
CCDC40-202ENST00000374876 HIST1H2BKO60814 126 aa12.57□□□□□ -0.4
CCDC40-202ENST00000374876 VENTXO95231 258 aa12.57□□□□□ -0.4
CCDC40-202ENST00000374876 HIST1H2BJP06899 126 aa12.57□□□□□ -0.4
CCDC40-202ENST00000374876 STAG3L2P0CL84 134 aa12.57□□□□□ -0.4
CCDC40-202ENST00000374876 STAG3L3P0CL85 134 aa12.57□□□□□ -0.4
CCDC40-202ENST00000374876 HIST1H2BOP23527 126 aa12.57□□□□□ -0.4
CCDC40-202ENST00000374876 S100PP25815 95 aa12.57□□□□□ -0.4
CCDC40-202ENST00000374876 HIST1H2BBP33778 126 aa12.57□□□□□ -0.4
CCDC40-202ENST00000374876 HIST1H2BDP58876 126 aa12.57□□□□□ -0.4
CCDC40-202ENST00000374876 HIST1H2BCP62807 126 aa12.57□□□□□ -0.4
CCDC40-202ENST00000374876 HIST2H2BEQ16778 126 aa12.57□□□□□ -0.4
CCDC40-202ENST00000374876 HIST2H2BFQ5QNW6 126 aaPredicted RBP12.57□□□□□ -0.4
CCDC40-202ENST00000374876 SLC16A13Q7RTY0 426 aa12.57□□□□□ -0.4
CCDC40-202ENST00000374876 STPG3Q8N7X2 389 aa12.57□□□□□ -0.4
CCDC40-202ENST00000374876 OSR1Q8TAX0 266 aaPredicted RBP12.57□□□□□ -0.4
CCDC40-202ENST00000374876 ABHD5Q8WTS1 349 aa12.57□□□□□ -0.4
CCDC40-202ENST00000374876 HIST1H2BHQ93079 126 aa12.57□□□□□ -0.4
CCDC40-202ENST00000374876 OR5B12Q96R08 314 aa12.57□□□□□ -0.4
CCDC40-202ENST00000374876 HIST1H2BNQ99877 126 aa12.57□□□□□ -0.4
CCDC40-202ENST00000374876 HIST1H2BMQ99879 126 aa12.57□□□□□ -0.4
CCDC40-202ENST00000374876 BET1LQ9NYM9 111 aa12.57□□□□□ -0.4
CCDC40-202ENST00000374876 DOK5Q9P104 306 aa12.57□□□□□ -0.4
CCDC40-202ENST00000374876 TEX50A0A1B0GTY4 177 aa12.56□□□□□ -0.4
CCDC40-202ENST00000374876 CLN5O75503 358 aa12.56□□□□□ -0.4
CCDC40-202ENST00000374876 FCN3O75636 299 aa12.56□□□□□ -0.4
CCDC40-202ENST00000374876 SAA1P0DJI8 122 aaPredicted RBP12.56□□□□□ -0.4
CCDC40-202ENST00000374876 CD99P14209 185 aa12.56□□□□□ -0.4
CCDC40-202ENST00000374876 HOXA5P20719 270 aa12.56□□□□□ -0.4
CCDC40-202ENST00000374876 GPR6P46095 362 aaPredicted RBP12.56□□□□□ -0.4
CCDC40-202ENST00000374876 ATP5G3P48201 142 aa12.56□□□□□ -0.4
CCDC40-202ENST00000374876 LYPD2Q6UXB3 125 aa12.56□□□□□ -0.4
CCDC40-202ENST00000374876 NECAP1Q8NC96 275 aa12.56□□□□□ -0.4
CCDC40-202ENST00000374876 OR51G1Q8NGK1 321 aa12.56□□□□□ -0.4
CCDC40-202ENST00000374876 OR10X1Q8NGY0 326 aa12.56□□□□□ -0.4
CCDC40-202ENST00000374876 OR5B3Q8NH48 314 aa12.56□□□□□ -0.4
CCDC40-202ENST00000374876 NANPQ8TBE9 248 aa12.56□□□□□ -0.4
CCDC40-202ENST00000374876 HARBI1Q96MB7 349 aa12.56□□□□□ -0.4
CCDC40-202ENST00000374876 TMUB1Q9BVT8 246 aa12.56□□□□□ -0.4
CCDC40-202ENST00000374876 IGHV4-61A0A0C4DH41 118 aa12.55□□□□□ -0.4
CCDC40-202ENST00000374876 FNDC10F2Z333 226 aa12.55□□□□□ -0.4
CCDC40-202ENST00000374876 F6UZH7 168 aa12.55□□□□□ -0.4
CCDC40-202ENST00000374876 SLC25A16P16260 332 aa12.55□□□□□ -0.4
CCDC40-202ENST00000374876 NPPCP23582 126 aa12.55□□□□□ -0.4
CCDC40-202ENST00000374876 RPL29P47914 159 aaKnown RBP12.55□□□□□ -0.4
CCDC40-202ENST00000374876 RHOBP62745 196 aa12.55□□□□□ -0.4
CCDC40-202ENST00000374876 MED13LQ71F56 2210 aa12.55□□□□□ -0.4
CCDC40-202ENST00000374876 A0A096LNT2 108 aa12.55□□□□□ -0.4
CCDC40-202ENST00000374876 DVL1O14640 695 aa12.55□□□□□ -0.4
CCDC40-202ENST00000374876 GALR1P47211 349 aa12.55□□□□□ -0.4
CCDC40-202ENST00000374876 REG1BP48304 166 aa12.55□□□□□ -0.4
CCDC40-202ENST00000374876 ATP5IP56385 69 aaPredicted RBP12.55□□□□□ -0.4
CCDC40-202ENST00000374876 ANAPC16Q96DE5 110 aa12.55□□□□□ -0.4
CCDC40-202ENST00000374876 SMR3AQ99954 134 aa12.55□□□□□ -0.4
CCDC40-202ENST00000374876 TXNDC17Q9BRA2 123 aa12.55□□□□□ -0.4
CCDC40-202ENST00000374876 F8P00451 2351 aa12.54□□□□□ -0.4
CCDC40-202ENST00000374876 H0YJW9 148 aa12.54□□□□□ -0.4
CCDC40-202ENST00000374876 TNFRSF13BO14836 293 aaPredicted RBP12.54□□□□□ -0.4
CCDC40-202ENST00000374876 NDUFB4O95168 129 aa12.54□□□□□ -0.4
CCDC40-202ENST00000374876 PFN1P07737 140 aaKnown RBP12.54□□□□□ -0.4
CCDC40-202ENST00000374876 CDX1P47902 265 aaPredicted RBP12.54□□□□□ -0.4
CCDC40-202ENST00000374876 GNB1P62873 340 aa12.54□□□□□ -0.4
CCDC40-202ENST00000374876 OR5AN1Q8NGI8 311 aa12.54□□□□□ -0.4
CCDC40-202ENST00000374876 FLYWCH2Q96CP2 140 aaKnown RBP12.54□□□□□ -0.4
CCDC40-202ENST00000374876 COMMD5Q9GZQ3 224 aa12.54□□□□□ -0.4
CCDC40-202ENST00000374876 TRGC1P0CF51 173 aa12.54□□□□□ -0.4
CCDC40-202ENST00000374876 USF1P22415 310 aaPredicted RBP12.54□□□□□ -0.4
CCDC40-202ENST00000374876 OR5T1Q8NG75 326 aa12.54□□□□□ -0.4
CCDC40-202ENST00000374876 FRZBQ92765 325 aa12.54□□□□□ -0.4
CCDC40-202ENST00000374876 SEPSECSQ9HD40 501 aaKnown RBP12.54□□□□□ -0.4
CCDC40-202ENST00000374876 CR1P17927 2039 aa12.54□□□□□ -0.4
CCDC40-202ENST00000374876 S100A12P80511 92 aa12.53□□□□□ -0.4
CCDC40-202ENST00000374876 TMEM177Q53S58 311 aa12.53□□□□□ -0.4
CCDC40-202ENST00000374876 C2orf83Q53S99 150 aa12.53□□□□□ -0.4
CCDC40-202ENST00000374876 CTSZQ9UBR2 303 aa12.53□□□□□ -0.4
CCDC40-202ENST00000374876 MT-CO2P00403 227 aa12.52□□□□□ -0.4
CCDC40-202ENST00000374876 GCHFRP30047 84 aa12.52□□□□□ -0.4
CCDC40-202ENST00000374876 RPL8P62917 257 aaKnown RBP12.52□□□□□ -0.4
CCDC40-202ENST00000374876 PRR20EP86478 221 aa12.52□□□□□ -0.4
CCDC40-202ENST00000374876 PRR20CP86479 221 aa12.52□□□□□ -0.4
CCDC40-202ENST00000374876 PRR20DP86480 221 aa12.52□□□□□ -0.4
CCDC40-202ENST00000374876 PRR20BP86481 221 aa12.52□□□□□ -0.4
CCDC40-202ENST00000374876 PRR20AP86496 221 aa12.52□□□□□ -0.4
CCDC40-202ENST00000374876 SPATA31B1PQ5VZV4 182 aa12.52□□□□□ -0.4
CCDC40-202ENST00000374876 FAM71F2Q6NXP2 309 aa12.52□□□□□ -0.4
CCDC40-202ENST00000374876 TMEM144Q7Z5S9 345 aa12.52□□□□□ -0.4
CCDC40-202ENST00000374876 C8orf31Q8N9H6 132 aa12.52□□□□□ -0.4
CCDC40-202ENST00000374876 OR4C13Q8NGP0 309 aa12.52□□□□□ -0.4
CCDC40-202ENST00000374876 OR1L8Q8NGR8 309 aa12.52□□□□□ -0.4
CCDC40-202ENST00000374876 TMEM186Q96B77 213 aa12.52□□□□□ -0.4
CCDC40-202ENST00000374876 TIMD4Q96H15 378 aa12.52□□□□□ -0.4
CCDC40-202ENST00000374876 DERL1Q9BUN8 251 aa12.52□□□□□ -0.4
CCDC40-202ENST00000374876 SRD5A3Q9H8P0 318 aa12.52□□□□□ -0.4
CCDC40-202ENST00000374876 KAAG1Q9UBP8 84 aa12.52□□□□□ -0.4
CCDC40-202ENST00000374876 PPP1R2P9O14990 202 aa12.52□□□□□ -0.41
CCDC40-202ENST00000374876 S100A2P29034 98 aa12.52□□□□□ -0.41
CCDC40-202ENST00000374876 LOXL1Q08397 574 aaPredicted RBP12.52□□□□□ -0.41
CCDC40-202ENST00000374876 LINC01551Q86U37 167 aa12.52□□□□□ -0.41
CCDC40-202ENST00000374876 PDPNQ86YL7 162 aa12.52□□□□□ -0.41
CCDC40-202ENST00000374876 LINC00311Q8N616 119 aa12.52□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 113.7 ms