RNA–Protein interactions for RNA: ENST00000372733.3

SDC4-201, Transcript of syndecan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC4, Length 2,613 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC4-201ENST00000372733 USF1P22415 310 aaPredicted RBP13.36□□□□□ -0.27
SDC4-201ENST00000372733 TAS2R45P59539 299 aa13.36□□□□□ -0.27
SDC4-201ENST00000372733 HES3Q5TGS1 186 aa13.36□□□□□ -0.27
SDC4-201ENST00000372733 C11orf42Q8N5U0 333 aa13.36□□□□□ -0.27
SDC4-201ENST00000372733 ZNF436-AS1Q8NC38 126 aaPredicted RBP13.36□□□□□ -0.27
SDC4-201ENST00000372733 OR10W1Q8NGF6 305 aa13.36□□□□□ -0.27
SDC4-201ENST00000372733 TXN2Q99757 166 aa13.36□□□□□ -0.27
SDC4-201ENST00000372733 UPK2O00526 184 aa13.35□□□□□ -0.27
SDC4-201ENST00000372733 ITGB1BP1O14713 200 aa13.35□□□□□ -0.27
SDC4-201ENST00000372733 UBE2L3P68036 154 aaKnown RBP13.35□□□□□ -0.27
SDC4-201ENST00000372733 POU2AF1Q16633 256 aa13.35□□□□□ -0.27
SDC4-201ENST00000372733 DMRTA1Q5VZB9 504 aa13.35□□□□□ -0.27
SDC4-201ENST00000372733 LCN12Q6JVE5 192 aa13.35□□□□□ -0.27
SDC4-201ENST00000372733 Q6ZN92 141 aa13.35□□□□□ -0.27
SDC4-201ENST00000372733 STPG4Q8N801 248 aa13.35□□□□□ -0.27
SDC4-201ENST00000372733 ZNF439Q8NDP4 499 aa13.35□□□□□ -0.27
SDC4-201ENST00000372733 SLC35D1Q9NTN3 355 aa13.35□□□□□ -0.27
SDC4-201ENST00000372733 UQCR10Q9UDW1 63 aa13.35□□□□□ -0.27
SDC4-201ENST00000372733 C19orf67A6NJJ6 358 aa13.35□□□□□ -0.27
SDC4-201ENST00000372733 C8orf88P0DMB2 117 aa13.35□□□□□ -0.27
SDC4-201ENST00000372733 CFHR2P36980 270 aa13.35□□□□□ -0.27
SDC4-201ENST00000372733 MAJINQ3KP22 176 aa13.35□□□□□ -0.27
SDC4-201ENST00000372733 COX19Q49B96 90 aa13.35□□□□□ -0.27
SDC4-201ENST00000372733 DEFB108BQ8NET1 73 aa13.35□□□□□ -0.27
SDC4-201ENST00000372733 SLC25A33Q9BSK2 321 aa13.35□□□□□ -0.27
SDC4-201ENST00000372733 TEX50A0A1B0GTY4 177 aa13.34□□□□□ -0.27
SDC4-201ENST00000372733 A0A1W2PRE2 83 aa13.34□□□□□ -0.27
SDC4-201ENST00000372733 DPRXA6NFQ7 191 aa13.34□□□□□ -0.27
SDC4-201ENST00000372733 RNASE2P10153 161 aaKnown RBP13.34□□□□□ -0.27
SDC4-201ENST00000372733 PRRX1P54821 245 aa13.34□□□□□ -0.27
SDC4-201ENST00000372733 BHLHA15Q7RTS1 189 aaPredicted RBP13.34□□□□□ -0.27
SDC4-201ENST00000372733 C18orf32Q8TCD1 76 aa13.34□□□□□ -0.27
SDC4-201ENST00000372733 RND1Q92730 232 aa13.34□□□□□ -0.27
SDC4-201ENST00000372733 ADTRPQ96IZ2 230 aa13.34□□□□□ -0.27
SDC4-201ENST00000372733 PPP1R14DQ9NXH3 145 aa13.34□□□□□ -0.27
SDC4-201ENST00000372733 IZUMO1RA6ND01 250 aa13.34□□□□□ -0.27
SDC4-201ENST00000372733 CRYABP02511 175 aaKnown RBP13.34□□□□□ -0.27
SDC4-201ENST00000372733 HNRNPA3P51991 378 aaKnown RBP13.34□□□□□ -0.27
SDC4-201ENST00000372733 FAM167A-AS1Q96KT0 104 aa13.34□□□□□ -0.27
SDC4-201ENST00000372733 GUCD1Q96NT3 240 aa13.34□□□□□ -0.27
SDC4-201ENST00000372733 SLC25A2Q9BXI2 301 aa13.34□□□□□ -0.27
SDC4-201ENST00000372733 ZNF71Q9NQZ8 489 aaPredicted RBP13.34□□□□□ -0.27
SDC4-201ENST00000372733 ZFP30Q9Y2G7 519 aa13.34□□□□□ -0.27
SDC4-201ENST00000372733 ZNF257Q9Y2Q1 563 aa13.34□□□□□ -0.27
SDC4-201ENST00000372733 DSCAML1Q8TD84 2053 aa13.33□□□□□ -0.27
SDC4-201ENST00000372733 PRR33A8MZF0 331 aa13.33□□□□□ -0.28
SDC4-201ENST00000372733 CT45A6P0DMU7 189 aa13.33□□□□□ -0.28
SDC4-201ENST00000372733 CT45A5P0DMU8 189 aa13.33□□□□□ -0.28
SDC4-201ENST00000372733 CT45A7P0DMV0 189 aa13.33□□□□□ -0.28
SDC4-201ENST00000372733 SSBP2P81877 361 aaPredicted RBP13.33□□□□□ -0.28
SDC4-201ENST00000372733 SRSF6Q13247 344 aaKnown RBP13.33□□□□□ -0.28
SDC4-201ENST00000372733 PRR31Q5SQ13 230 aa13.33□□□□□ -0.28
SDC4-201ENST00000372733 DNAJC4Q9NNZ3 241 aa13.33□□□□□ -0.28
SDC4-201ENST00000372733 ZNF331Q9NQX6 463 aaPredicted RBP13.33□□□□□ -0.28
SDC4-201ENST00000372733 ZNF355PQ9NSJ1 428 aa13.33□□□□□ -0.28
SDC4-201ENST00000372733 SIAH2O43255 324 aa13.33□□□□□ -0.28
SDC4-201ENST00000372733 LHBP01229 141 aa13.33□□□□□ -0.28
SDC4-201ENST00000372733 SAA1P0DJI8 122 aaPredicted RBP13.33□□□□□ -0.28
SDC4-201ENST00000372733 PYYP10082 97 aa13.33□□□□□ -0.28
SDC4-201ENST00000372733 CCL11P51671 97 aa13.33□□□□□ -0.28
SDC4-201ENST00000372733 C2orf83Q53S99 150 aa13.33□□□□□ -0.28
SDC4-201ENST00000372733 GDF5OSQ5U4N7 250 aa13.33□□□□□ -0.28
SDC4-201ENST00000372733 OR2T6Q8NHC8 308 aa13.33□□□□□ -0.28
SDC4-201ENST00000372733 SNRNP40Q96DI7 357 aaKnown RBP13.33□□□□□ -0.28
SDC4-201ENST00000372733 SLC25A15Q9Y619 301 aa13.33□□□□□ -0.28
SDC4-201ENST00000372733 SVILO95425 2214 aa13.32□□□□□ -0.28
SDC4-201ENST00000372733 M0R1B8 84 aa13.32□□□□□ -0.28
SDC4-201ENST00000372733 NDUFB8O95169 186 aa13.32□□□□□ -0.28
SDC4-201ENST00000372733 RELQ04864 619 aaPredicted RBP13.32□□□□□ -0.28
SDC4-201ENST00000372733 DEFB123Q8N688 67 aa13.32□□□□□ -0.28
SDC4-201ENST00000372733 ICE1Q9Y2F5 2266 aa13.32□□□□□ -0.28
SDC4-201ENST00000372733 TCF21O43680 179 aa13.32□□□□□ -0.28
SDC4-201ENST00000372733 MFAP2P55001 183 aa13.32□□□□□ -0.28
SDC4-201ENST00000372733 CD69Q07108 199 aa13.32□□□□□ -0.28
SDC4-201ENST00000372733 FAM216BQ8N7L0 139 aa13.32□□□□□ -0.28
SDC4-201ENST00000372733 FDCSPQ8NFU4 85 aa13.32□□□□□ -0.28
SDC4-201ENST00000372733 BORCS7Q96B45 105 aa13.32□□□□□ -0.28
SDC4-201ENST00000372733 CLEC7AQ9BXN2 247 aa13.32□□□□□ -0.28
SDC4-201ENST00000372733 PLSCR4Q9NRQ2 329 aa13.32□□□□□ -0.28
SDC4-201ENST00000372733 PROCRQ9UNN8 238 aa13.32□□□□□ -0.28
SDC4-201ENST00000372733 LAMTOR2Q9Y2Q5 125 aa13.32□□□□□ -0.28
SDC4-201ENST00000372733 PCNX2A6NKB5 2137 aa13.32□□□□□ -0.28
SDC4-201ENST00000372733 BDP1A6H8Y1 2624 aa13.32□□□□□ -0.28
SDC4-201ENST00000372733 PSMB11A5LHX3 300 aa13.31□□□□□ -0.28
SDC4-201ENST00000372733 SFTPCP11686 197 aa13.31□□□□□ -0.28
SDC4-201ENST00000372733 KLF3P57682 345 aaPredicted RBP13.31□□□□□ -0.28
SDC4-201ENST00000372733 RTL8BQ17RB0 113 aa13.31□□□□□ -0.28
SDC4-201ENST00000372733 SPACA3Q8IXA5 215 aa13.31□□□□□ -0.28
SDC4-201ENST00000372733 COMMD5Q9GZQ3 224 aa13.31□□□□□ -0.28
SDC4-201ENST00000372733 DCAF16Q9NXF7 216 aa13.31□□□□□ -0.28
SDC4-201ENST00000372733 TANC2Q9HCD6 1990 aa13.31□□□□□ -0.28
SDC4-201ENST00000372733 PRR27Q6MZM9 219 aa13.31□□□□□ -0.28
SDC4-201ENST00000372733 PNKDQ8N490 385 aa13.31□□□□□ -0.28
SDC4-201ENST00000372733 CCL13Q99616 98 aa13.31□□□□□ -0.28
SDC4-201ENST00000372733 YLPM1P49750 1951 aaKnown RBP13.3□□□□□ -0.28
SDC4-201ENST00000372733 NKX2-8O15522 239 aa13.3□□□□□ -0.28
SDC4-201ENST00000372733 IGHV3-48P01763 117 aa13.3□□□□□ -0.28
SDC4-201ENST00000372733 GPR6P46095 362 aaPredicted RBP13.3□□□□□ -0.28
SDC4-201ENST00000372733 TNXAQ16473 311 aa13.3□□□□□ -0.28
SDC4-201ENST00000372733 OR1L8Q8NGR8 309 aa13.3□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms