RNA–Protein interactions for RNA: ENST00000360019.7

CLN3-206, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,840 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-206ENST00000360019 RNASEH2CQ8TDP1 164 aaKnown RBP14.68□□□□□ -0.06
CLN3-206ENST00000360019 PARD6GQ9BYG4 376 aaPredicted RBP14.68□□□□□ -0.06
CLN3-206ENST00000360019 PARP11Q9NR21 331 aa14.68□□□□□ -0.06
CLN3-206ENST00000360019 SETXQ7Z333 2677 aaKnown RBP14.68□□□□□ -0.06
CLN3-206ENST00000360019 CRYGCP07315 174 aa14.67□□□□□ -0.06
CLN3-206ENST00000360019 CD69Q07108 199 aa14.67□□□□□ -0.06
CLN3-206ENST00000360019 SGMS2Q8NHU3 365 aa14.67□□□□□ -0.06
CLN3-206ENST00000360019 TAF15Q92804 592 aaKnown RBP eCLIP14.67□□□□□ -0.06
CLN3-206ENST00000360019 WNT10AQ9GZT5 417 aa14.67□□□□□ -0.06
CLN3-206ENST00000360019 FNDC4Q9H6D8 234 aaPredicted RBP14.67□□□□□ -0.06
CLN3-206ENST00000360019 RPS10-NUDT3A0A1W2PQS6 291 aa14.66□□□□□ -0.06
CLN3-206ENST00000360019 SMCO3A2RU48 225 aa14.66□□□□□ -0.06
CLN3-206ENST00000360019 M0QZK8 103 aa14.66□□□□□ -0.06
CLN3-206ENST00000360019 SEC11BP0C7V7 166 aa14.66□□□□□ -0.06
CLN3-206ENST00000360019 SRP14P37108 136 aaKnown RBP14.66□□□□□ -0.06
CLN3-206ENST00000360019 TREML4Q6UXN2 200 aa14.66□□□□□ -0.06
CLN3-206ENST00000360019 SCGB1C1Q8TD33 95 aa14.66□□□□□ -0.06
CLN3-206ENST00000360019 RSG1Q9BU20 258 aa14.66□□□□□ -0.06
CLN3-206ENST00000360019 TNFRSF19Q9NS68 423 aa14.66□□□□□ -0.06
CLN3-206ENST00000360019 WDR83OSQ9Y284 106 aa14.66□□□□□ -0.06
CLN3-206ENST00000360019 HIVEP1P15822 2718 aa14.66□□□□□ -0.06
CLN3-206ENST00000360019 NPIPB5A8MRT5 1133 aa14.66□□□□□ -0.06
CLN3-206ENST00000360019 HOXA3O43365 443 aaPredicted RBP14.66□□□□□ -0.06
CLN3-206ENST00000360019 FGF7P21781 194 aa14.66□□□□□ -0.06
CLN3-206ENST00000360019 EIF5AL1Q6IS14 154 aaKnown RBP14.66□□□□□ -0.06
CLN3-206ENST00000360019 TTC9CQ8N5M4 171 aa14.66□□□□□ -0.06
CLN3-206ENST00000360019 GNPNAT1Q96EK6 184 aaPredicted RBP14.66□□□□□ -0.06
CLN3-206ENST00000360019 VPREB3Q9UKI3 123 aa14.66□□□□□ -0.06
CLN3-206ENST00000360019 OPRK1P41145 380 aa14.65□□□□□ -0.06
CLN3-206ENST00000360019 BLCAPP62952 87 aa14.65□□□□□ -0.06
CLN3-206ENST00000360019 GAMTQ14353 236 aa14.65□□□□□ -0.06
CLN3-206ENST00000360019 SIGLECL1Q8N7X8 197 aa14.65□□□□□ -0.06
CLN3-206ENST00000360019 MISP3Q96FF7 219 aa14.65□□□□□ -0.06
CLN3-206ENST00000360019 BTBD17A6NE02 478 aa14.64□□□□□ -0.07
CLN3-206ENST00000360019 FNDC10F2Z333 226 aa14.64□□□□□ -0.07
CLN3-206ENST00000360019 PRH1P02810 166 aa14.64□□□□□ -0.07
CLN3-206ENST00000360019 FAM157CP0CG43 387 aa14.64□□□□□ -0.07
CLN3-206ENST00000360019 BTNL8Q6UX41 500 aa14.64□□□□□ -0.07
CLN3-206ENST00000360019 Q6ZS46 218 aa14.64□□□□□ -0.07
CLN3-206ENST00000360019 SLC16A13Q7RTY0 426 aa14.64□□□□□ -0.07
CLN3-206ENST00000360019 OR2G3Q8NGZ4 309 aa14.64□□□□□ -0.07
CLN3-206ENST00000360019 CACNG8Q8WXS5 425 aa14.64□□□□□ -0.07
CLN3-206ENST00000360019 NPVFQ9HCQ7 196 aa14.64□□□□□ -0.07
CLN3-206ENST00000360019 LSM4Q9Y4Z0 139 aaKnown RBP14.64□□□□□ -0.07
CLN3-206ENST00000360019 LY6G6DO95868 133 aa14.64□□□□□ -0.07
CLN3-206ENST00000360019 NMBP08949 121 aa14.64□□□□□ -0.07
CLN3-206ENST00000360019 DEFA4P12838 97 aa14.64□□□□□ -0.07
CLN3-206ENST00000360019 GPX4P36969 197 aaPredicted RBP14.64□□□□□ -0.07
CLN3-206ENST00000360019 ECSCRQ19T08 205 aa14.64□□□□□ -0.07
CLN3-206ENST00000360019 C9orf152Q5JTZ5 239 aa14.64□□□□□ -0.07
CLN3-206ENST00000360019 TMEM182Q6ZP80 229 aaPredicted RBP14.64□□□□□ -0.07
CLN3-206ENST00000360019 OR2T6Q8NHC8 308 aa14.64□□□□□ -0.07
CLN3-206ENST00000360019 NPCDR1Q9BY65 106 aa14.64□□□□□ -0.07
CLN3-206ENST00000360019 HIVEP2P31629 2446 aa14.63□□□□□ -0.07
CLN3-206ENST00000360019 G3V318 75 aa14.63□□□□□ -0.07
CLN3-206ENST00000360019 IGHV3-48P01763 117 aa14.63□□□□□ -0.07
CLN3-206ENST00000360019 IGHG2P01859 326 aa14.63□□□□□ -0.07
CLN3-206ENST00000360019 AKR1C1Q04828 323 aa14.63□□□□□ -0.07
CLN3-206ENST00000360019 CLLU1Q5K131 121 aa14.63□□□□□ -0.07
CLN3-206ENST00000360019 OR5T1Q8NG75 326 aa14.63□□□□□ -0.07
CLN3-206ENST00000360019 TMUB1Q9BVT8 246 aa14.63□□□□□ -0.07
CLN3-206ENST00000360019 TMEM160Q9NX00 188 aa14.63□□□□□ -0.07
CLN3-206ENST00000360019 MRPL36Q9P0J6 103 aaKnown RBP14.63□□□□□ -0.07
CLN3-206ENST00000360019 CORTO00230 105 aa14.62□□□□□ -0.07
CLN3-206ENST00000360019 HNF1AP20823 631 aa14.62□□□□□ -0.07
CLN3-206ENST00000360019 SULT1A2P50226 295 aa14.62□□□□□ -0.07
CLN3-206ENST00000360019 UNQ5815/PRO19632Q6UWF5 114 aa14.62□□□□□ -0.07
CLN3-206ENST00000360019 RNF141Q8WVD5 230 aa14.62□□□□□ -0.07
CLN3-206ENST00000360019 FANCD2OSQ96PS1 177 aa14.62□□□□□ -0.07
CLN3-206ENST00000360019 MGST2Q99735 147 aa14.62□□□□□ -0.07
CLN3-206ENST00000360019 PSMG3Q9BT73 122 aaPredicted RBP14.62□□□□□ -0.07
CLN3-206ENST00000360019 IGLV11-55A0A075B6I3 123 aa14.62□□□□□ -0.07
CLN3-206ENST00000360019 IGKV1OR2-108A0A075B7D4 117 aa14.62□□□□□ -0.07
CLN3-206ENST00000360019 IGHV3-21A0A0B4J1V1 117 aa14.62□□□□□ -0.07
CLN3-206ENST00000360019 MT-CO2P00403 227 aa14.62□□□□□ -0.07
CLN3-206ENST00000360019 CRIP2P52943 208 aaPredicted RBP14.62□□□□□ -0.07
CLN3-206ENST00000360019 AKIRIN2Q53H80 203 aa14.62□□□□□ -0.07
CLN3-206ENST00000360019 TMEM144Q7Z5S9 345 aa14.62□□□□□ -0.07
CLN3-206ENST00000360019 CENPVQ7Z7K6 275 aaPredicted RBP14.62□□□□□ -0.07
CLN3-206ENST00000360019 OR1L6Q8NGR2 347 aa14.62□□□□□ -0.07
CLN3-206ENST00000360019 FAM110DQ8TAY7 271 aaPredicted RBP14.62□□□□□ -0.07
CLN3-206ENST00000360019 TIMM9Q9Y5J7 89 aa14.62□□□□□ -0.07
CLN3-206ENST00000360019 I3L2K1 104 aa14.61□□□□□ -0.07
CLN3-206ENST00000360019 IGF1P05019 195 aa14.61□□□□□ -0.07
CLN3-206ENST00000360019 RAB14P61106 215 aa14.61□□□□□ -0.07
CLN3-206ENST00000360019 C19orf54Q5BKX5 351 aa14.61□□□□□ -0.07
CLN3-206ENST00000360019 TEPPQ6URK8 271 aa14.61□□□□□ -0.07
CLN3-206ENST00000360019 SLC35E3Q7Z769 313 aa14.61□□□□□ -0.07
CLN3-206ENST00000360019 ACY3Q96HD9 319 aa14.61□□□□□ -0.07
CLN3-206ENST00000360019 SLC35E1Q96K37 410 aa14.61□□□□□ -0.07
CLN3-206ENST00000360019 LINC00527Q9UJ94 153 aa14.61□□□□□ -0.07
CLN3-206ENST00000360019 MPDU1O75352 247 aa14.6□□□□□ -0.07
CLN3-206ENST00000360019 TMEM68Q96MH6 324 aa14.6□□□□□ -0.07
CLN3-206ENST00000360019 DUX5Q96PT3 197 aa14.6□□□□□ -0.07
CLN3-206ENST00000360019 GGTLC1Q9BX51 225 aa14.6□□□□□ -0.07
CLN3-206ENST00000360019 K7EIM0 57 aa14.59□□□□□ -0.07
CLN3-206ENST00000360019 FHITP49789 147 aa14.59□□□□□ -0.07
CLN3-206ENST00000360019 TRAV41A0A0B4J266 112 aa14.59□□□□□ -0.07
CLN3-206ENST00000360019 AGPAT2O15120 278 aa14.59□□□□□ -0.07
CLN3-206ENST00000360019 CD99P14209 185 aa14.59□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 66.4 ms