RNA–Protein interactions for RNA: ENST00000225726.9

CCDC47-201, Transcript of coiled-coil domain containing 47, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC47, Length 3,466 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC47-201ENST00000225726 RPS10P5Q9NQ39 176 aa11.91□□□□□ -0.5
CCDC47-201ENST00000225726 KIAA1456Q9P272 454 aa11.91□□□□□ -0.5
CCDC47-201ENST00000225726 TNCP24821 2201 aa11.91□□□□□ -0.5
CCDC47-201ENST00000225726 NBR2O15453 112 aa11.91□□□□□ -0.5
CCDC47-201ENST00000225726 SNRNP70P08621 437 aaKnown RBP11.91□□□□□ -0.5
CCDC47-201ENST00000225726 OPRK1P41145 380 aa11.91□□□□□ -0.5
CCDC47-201ENST00000225726 CEBPGP53567 150 aa11.91□□□□□ -0.5
CCDC47-201ENST00000225726 CCL20P78556 96 aa11.91□□□□□ -0.5
CCDC47-201ENST00000225726 MALSU1Q96EH3 234 aa11.91□□□□□ -0.5
CCDC47-201ENST00000225726 C14orf144Q96I85 54 aa11.91□□□□□ -0.5
CCDC47-201ENST00000225726 KCNIP2Q9NS61 270 aa11.91□□□□□ -0.5
CCDC47-201ENST00000225726 NDUFA3O95167 84 aa11.91□□□□□ -0.5
CCDC47-201ENST00000225726 OR13C7P0DN81 318 aa11.91□□□□□ -0.5
CCDC47-201ENST00000225726 PLGLAQ15195 96 aa11.91□□□□□ -0.5
CCDC47-201ENST00000225726 MMDQ15546 238 aa11.91□□□□□ -0.5
CCDC47-201ENST00000225726 SVBPQ8N300 66 aa11.91□□□□□ -0.5
CCDC47-201ENST00000225726 EAF1Q96JC9 268 aaPredicted RBP11.91□□□□□ -0.5
CCDC47-201ENST00000225726 ACOT6Q3I5F7 207 aaPredicted RBP11.9□□□□□ -0.5
CCDC47-201ENST00000225726 C10orf91Q5T1B1 145 aa11.9□□□□□ -0.5
CCDC47-201ENST00000225726 ZNF787Q6DD87 383 aa11.9□□□□□ -0.5
CCDC47-201ENST00000225726 TEPPQ6URK8 271 aa11.9□□□□□ -0.5
CCDC47-201ENST00000225726 RNASEH2CQ8TDP1 164 aaKnown RBP11.9□□□□□ -0.5
CCDC47-201ENST00000225726 C1orf159Q96HA4 380 aa11.9□□□□□ -0.5
CCDC47-201ENST00000225726 EIF5A2Q9GZV4 153 aaKnown RBP11.9□□□□□ -0.5
CCDC47-201ENST00000225726 IGLC7A0M8Q6 106 aa11.9□□□□□ -0.5
CCDC47-201ENST00000225726 OR10G4Q8NGN3 311 aa11.9□□□□□ -0.5
CCDC47-201ENST00000225726 OR10G9Q8NGN4 311 aa11.9□□□□□ -0.5
CCDC47-201ENST00000225726 OR10G7Q8NGN6 311 aa11.9□□□□□ -0.5
CCDC47-201ENST00000225726 GGTLC1Q9BX51 225 aa11.9□□□□□ -0.5
CCDC47-201ENST00000225726 M0R036 132 aa11.9□□□□□ -0.51
CCDC47-201ENST00000225726 SNAPINO95295 136 aa11.9□□□□□ -0.51
CCDC47-201ENST00000225726 GNB1P62873 340 aa11.9□□□□□ -0.51
CCDC47-201ENST00000225726 CD69Q07108 199 aa11.9□□□□□ -0.51
CCDC47-201ENST00000225726 EBI3Q14213 229 aa11.9□□□□□ -0.51
CCDC47-201ENST00000225726 SSX7Q7RTT5 188 aa11.9□□□□□ -0.51
CCDC47-201ENST00000225726 RPP25LQ8N5L8 163 aaKnown RBP11.9□□□□□ -0.51
CCDC47-201ENST00000225726 ZNF114Q8NC26 417 aa11.9□□□□□ -0.51
CCDC47-201ENST00000225726 CACNG8Q8WXS5 425 aa11.9□□□□□ -0.51
CCDC47-201ENST00000225726 P2RX4Q99571 388 aa11.9□□□□□ -0.51
CCDC47-201ENST00000225726 SLC25A16P16260 332 aa11.89□□□□□ -0.51
CCDC47-201ENST00000225726 ADCYAP1P18509 176 aa11.89□□□□□ -0.51
CCDC47-201ENST00000225726 RAB31Q13636 194 aa11.89□□□□□ -0.51
CCDC47-201ENST00000225726 HES1Q14469 280 aa11.89□□□□□ -0.51
CCDC47-201ENST00000225726 SEC11CQ9BY50 192 aa11.89□□□□□ -0.51
CCDC47-201ENST00000225726 CARHSP1Q9Y2V2 147 aaKnown RBP11.89□□□□□ -0.51
CCDC47-201ENST00000225726 SFTA3P0C7M3 94 aa11.89□□□□□ -0.51
CCDC47-201ENST00000225726 PAX6P26367 422 aa11.89□□□□□ -0.51
CCDC47-201ENST00000225726 NDUFA6P56556 154 aa11.89□□□□□ -0.51
CCDC47-201ENST00000225726 TMEM144Q7Z5S9 345 aa11.89□□□□□ -0.51
CCDC47-201ENST00000225726 AJUBAQ96IF1 538 aa11.89□□□□□ -0.51
CCDC47-201ENST00000225726 ACTR3CQ9C0K3 210 aaPredicted RBP11.89□□□□□ -0.51
CCDC47-201ENST00000225726 SMDT1Q9H4I9 107 aa11.89□□□□□ -0.51
CCDC47-201ENST00000225726 SLC39A9Q9NUM3 307 aa11.89□□□□□ -0.51
CCDC47-201ENST00000225726 COL12A1Q99715 3063 aa11.89□□□□□ -0.51
CCDC47-201ENST00000225726 CTXND1A0A1B0GTU2 59 aa11.88□□□□□ -0.51
CCDC47-201ENST00000225726 MAP1LC3B2A6NCE7 125 aa11.88□□□□□ -0.51
CCDC47-201ENST00000225726 RBFOX3A6NFN3 312 aa11.88□□□□□ -0.51
CCDC47-201ENST00000225726 PRSS47A8MTI9 375 aa11.88□□□□□ -0.51
CCDC47-201ENST00000225726 C9JQL5 133 aa11.88□□□□□ -0.51
CCDC47-201ENST00000225726 BATFQ16520 125 aa11.88□□□□□ -0.51
CCDC47-201ENST00000225726 LCN15Q6UWW0 184 aa11.88□□□□□ -0.51
CCDC47-201ENST00000225726 Q8N6K4 173 aa11.88□□□□□ -0.51
CCDC47-201ENST00000225726 SRSF8Q9BRL6 282 aaKnown RBP11.88□□□□□ -0.51
CCDC47-201ENST00000225726 MAP1LC3BQ9GZQ8 125 aa11.88□□□□□ -0.51
CCDC47-201ENST00000225726 AKAP6Q13023 2319 aa11.88□□□□□ -0.51
CCDC47-201ENST00000225726 TEX22C9J3V5 150 aa11.88□□□□□ -0.51
CCDC47-201ENST00000225726 NPFFO15130 113 aa11.88□□□□□ -0.51
CCDC47-201ENST00000225726 ZNF25P17030 456 aaPredicted RBP11.88□□□□□ -0.51
CCDC47-201ENST00000225726 CLEC12BQ2HXU8 276 aa11.88□□□□□ -0.51
CCDC47-201ENST00000225726 PVRIGQ6DKI7 326 aa11.88□□□□□ -0.51
CCDC47-201ENST00000225726 OR10D4PQ8NGN7 298 aa11.88□□□□□ -0.51
CCDC47-201ENST00000225726 PXMP4Q9Y6I8 212 aa11.88□□□□□ -0.51
CCDC47-201ENST00000225726 SPTAN1Q13813 2472 aaKnown RBP11.88□□□□□ -0.51
CCDC47-201ENST00000225726 FCN1O00602 326 aa11.88□□□□□ -0.51
CCDC47-201ENST00000225726 CYB5BO43169 146 aa11.88□□□□□ -0.51
CCDC47-201ENST00000225726 FBP1P09467 338 aa11.88□□□□□ -0.51
CCDC47-201ENST00000225726 CD24P25063 80 aa11.88□□□□□ -0.51
CCDC47-201ENST00000225726 SAA4P35542 130 aa11.88□□□□□ -0.51
CCDC47-201ENST00000225726 SSBP2P81877 361 aaPredicted RBP11.88□□□□□ -0.51
CCDC47-201ENST00000225726 GAMTQ14353 236 aa11.88□□□□□ -0.51
CCDC47-201ENST00000225726 SRSF12Q8WXF0 261 aaKnown RBP11.88□□□□□ -0.51
CCDC47-201ENST00000225726 CENPVL3A0A0U1RRI6 287 aa11.87□□□□□ -0.51
CCDC47-201ENST00000225726 PHOX2AO14813 284 aa11.87□□□□□ -0.51
CCDC47-201ENST00000225726 SLC35E1Q96K37 410 aa11.87□□□□□ -0.51
CCDC47-201ENST00000225726 REG1AP05451 166 aa11.87□□□□□ -0.51
CCDC47-201ENST00000225726 MIC13Q5XKP0 118 aa11.87□□□□□ -0.51
CCDC47-201ENST00000225726 SLC25A22Q9H936 323 aa11.87□□□□□ -0.51
CCDC47-201ENST00000225726 CBY1Q9Y3M2 126 aa11.87□□□□□ -0.51
CCDC47-201ENST00000225726 COL8A1P27658 744 aa11.87□□□□□ -0.51
CCDC47-201ENST00000225726 S100A2P29034 98 aa11.87□□□□□ -0.51
CCDC47-201ENST00000225726 RPL29P47914 159 aaKnown RBP11.87□□□□□ -0.51
CCDC47-201ENST00000225726 C5orf64Q2M2E5 130 aa11.87□□□□□ -0.51
CCDC47-201ENST00000225726 FBLN7Q53RD9 439 aa11.87□□□□□ -0.51
CCDC47-201ENST00000225726 ZNF506Q5JVG8 444 aa11.87□□□□□ -0.51
CCDC47-201ENST00000225726 SEC14L6B5MCN3 397 aa11.86□□□□□ -0.51
CCDC47-201ENST00000225726 S100A8P05109 93 aa11.86□□□□□ -0.51
CCDC47-201ENST00000225726 AREGP15514 252 aa11.86□□□□□ -0.51
CCDC47-201ENST00000225726 ARL6IP6Q8N6S5 226 aa11.86□□□□□ -0.51
CCDC47-201ENST00000225726 RARRES2Q99969 163 aa11.86□□□□□ -0.51
CCDC47-201ENST00000225726 MSMBP08118 114 aa11.86□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms