RNA–Protein interactions for RNA: ENST00000617451.4

PTPRF-216, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5 BASIC

Gene PTPRF, Length 1,129 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-216ENST00000617451 UBAC2Q8NBM4 344 aa18.39■□□□□ 0.53
PTPRF-216ENST00000617451 DGCR14Q96DF8 476 aaKnown RBP18.39■□□□□ 0.53
PTPRF-216ENST00000617451 ZNF414Q96IQ9 312 aa18.39■□□□□ 0.53
PTPRF-216ENST00000617451 IFT46Q9NQC8 304 aa18.39■□□□□ 0.53
PTPRF-216ENST00000617451 SMPXQ9UHP9 88 aa18.39■□□□□ 0.53
PTPRF-216ENST00000617451 XRCC3O43542 346 aa18.38■□□□□ 0.53
PTPRF-216ENST00000617451 SNAPC5O75971 98 aa18.38■□□□□ 0.53
PTPRF-216ENST00000617451 CTSGP08311 255 aa18.38■□□□□ 0.53
PTPRF-216ENST00000617451 Q56UQ5 140 aa18.38■□□□□ 0.53
PTPRF-216ENST00000617451 OR5B3Q8NH48 314 aa18.38■□□□□ 0.53
PTPRF-216ENST00000617451 ZNF2Q9BSG1 426 aaPredicted RBP18.38■□□□□ 0.53
PTPRF-216ENST00000617451 TMEM127O75204 238 aa18.37■□□□□ 0.53
PTPRF-216ENST00000617451 FCGR2BP31994 310 aaPredicted RBP18.37■□□□□ 0.53
PTPRF-216ENST00000617451 G6PCP35575 357 aa18.37■□□□□ 0.53
PTPRF-216ENST00000617451 APRG1Q8IVJ8 170 aa18.37■□□□□ 0.53
PTPRF-216ENST00000617451 RPP25LQ8N5L8 163 aaKnown RBP18.37■□□□□ 0.53
PTPRF-216ENST00000617451 PHLDA1Q8WV24 401 aaPredicted RBP18.37■□□□□ 0.53
PTPRF-216ENST00000617451 RNF2Q99496 336 aa18.37■□□□□ 0.53
PTPRF-216ENST00000617451 PRNDQ9UKY0 176 aa18.37■□□□□ 0.53
PTPRF-216ENST00000617451 ANAPC10Q9UM13 185 aa18.37■□□□□ 0.53
PTPRF-216ENST00000617451 CMTM1Q8IZ96 169 aa18.36■□□□□ 0.53
PTPRF-216ENST00000617451 TMEM56Q96MV1 263 aa18.36■□□□□ 0.53
PTPRF-216ENST00000617451 C6orf62Q9GZU0 229 aaPredicted RBP18.36■□□□□ 0.53
PTPRF-216ENST00000617451 FKBP11Q9NYL4 201 aa18.36■□□□□ 0.53
PTPRF-216ENST00000617451 IGHV7-4-1A0A0J9YVY3 117 aa18.35■□□□□ 0.53
PTPRF-216ENST00000617451 DBX1A6NMT0 343 aa18.35■□□□□ 0.53
PTPRF-216ENST00000617451 CHEK1O14757 476 aa18.35■□□□□ 0.53
PTPRF-216ENST00000617451 PMP2P02689 132 aa18.35■□□□□ 0.53
PTPRF-216ENST00000617451 TSPAN14Q8NG11 270 aa18.35■□□□□ 0.53
PTPRF-216ENST00000617451 OR1P1Q8NH06 330 aa18.35■□□□□ 0.53
PTPRF-216ENST00000617451 S100A16Q96FQ6 103 aaKnown RBP18.35■□□□□ 0.53
PTPRF-216ENST00000617451 RHPN1-AS1Q9BWJ2 59 aa18.35■□□□□ 0.53
PTPRF-216ENST00000617451 CSTL1Q9H114 145 aa18.35■□□□□ 0.53
PTPRF-216ENST00000617451 TMEM14BQ9NUH8 114 aa18.35■□□□□ 0.53
PTPRF-216ENST00000617451 VPS13DQ5THJ4 4388 aa18.34■□□□□ 0.53
PTPRF-216ENST00000617451 NAT1P18440 290 aa18.34■□□□□ 0.53
PTPRF-216ENST00000617451 RELQ04864 619 aaPredicted RBP18.34■□□□□ 0.53
PTPRF-216ENST00000617451 ZNF124Q15973 351 aa18.34■□□□□ 0.53
PTPRF-216ENST00000617451 TMEM116Q8NCL8 245 aa18.34■□□□□ 0.53
PTPRF-216ENST00000617451 OR10C1Q96KK4 312 aa18.34■□□□□ 0.53
PTPRF-216ENST00000617451 Q9H521 79 aa18.34■□□□□ 0.53
PTPRF-216ENST00000617451 HERC2O95714 4834 aa18.33■□□□□ 0.53
PTPRF-216ENST00000617451 GPR31O00270 319 aa18.33■□□□□ 0.52
PTPRF-216ENST00000617451 NUPL2O15504 423 aaKnown RBP18.33■□□□□ 0.52
PTPRF-216ENST00000617451 CMC4P56277 68 aaPredicted RBP18.33■□□□□ 0.52
PTPRF-216ENST00000617451 TAS2R46P59540 309 aa18.33■□□□□ 0.52
PTPRF-216ENST00000617451 OR5H2Q8NGV7 314 aa18.33■□□□□ 0.52
PTPRF-216ENST00000617451 FXYD6Q9H0Q3 95 aa18.33■□□□□ 0.52
PTPRF-216ENST00000617451 C15orf61A6NNL5 157 aa18.32■□□□□ 0.52
PTPRF-216ENST00000617451 MPTX1A8MV57 137 aa18.32■□□□□ 0.52
PTPRF-216ENST00000617451 I3L2K1 104 aa18.32■□□□□ 0.52
PTPRF-216ENST00000617451 UBE2NLQ5JXB2 153 aa18.32■□□□□ 0.52
PTPRF-216ENST00000617451 LGALS9CQ6DKI2 356 aa18.32■□□□□ 0.52
PTPRF-216ENST00000617451 OR6F1Q8NGZ6 308 aa18.32■□□□□ 0.52
PTPRF-216ENST00000617451 GATAD1Q8WUU5 269 aa18.32■□□□□ 0.52
PTPRF-216ENST00000617451 SLC25A46Q96AG3 418 aa18.32■□□□□ 0.52
PTPRF-216ENST00000617451 TSC22D3Q99576 134 aa18.32■□□□□ 0.52
PTPRF-216ENST00000617451 IGHV3-49A0A0A0MS15 119 aa18.31■□□□□ 0.52
PTPRF-216ENST00000617451 YIF1AO95070 293 aa18.31■□□□□ 0.52
PTPRF-216ENST00000617451 TFPI2P48307 235 aa18.31■□□□□ 0.52
PTPRF-216ENST00000617451 MFAP4P55083 255 aa18.31■□□□□ 0.52
PTPRF-216ENST00000617451 TAS2R20P59543 309 aa18.31■□□□□ 0.52
PTPRF-216ENST00000617451 NEDD8Q15843 81 aa18.31■□□□□ 0.52
PTPRF-216ENST00000617451 TMEM69Q5SWH9 247 aa18.31■□□□□ 0.52
PTPRF-216ENST00000617451 FAM90A2PQ658T7 463 aa18.31■□□□□ 0.52
PTPRF-216ENST00000617451 CROCCP3Q8IVE0 287 aa18.31■□□□□ 0.52
PTPRF-216ENST00000617451 TXN2Q99757 166 aa18.31■□□□□ 0.52
PTPRF-216ENST00000617451 RARRES2Q99969 163 aa18.31■□□□□ 0.52
PTPRF-216ENST00000617451 HECTD4Q9Y4D8 3996 aa18.31■□□□□ 0.52
PTPRF-216ENST00000617451 DEDDO75618 318 aa18.3■□□□□ 0.52
PTPRF-216ENST00000617451 LYSMD2Q8IV50 215 aa18.3■□□□□ 0.52
PTPRF-216ENST00000617451 MISP3Q96FF7 219 aa18.3■□□□□ 0.52
PTPRF-216ENST00000617451 KRTAP17-1Q9BYP8 105 aa18.3■□□□□ 0.52
PTPRF-216ENST00000617451 NXF2Q9GZY0 626 aaKnown RBP18.3■□□□□ 0.52
PTPRF-216ENST00000617451 FAM212BQ9NTI7 297 aaPredicted RBP18.3■□□□□ 0.52
PTPRF-216ENST00000617451 DNAH6Q9C0G6 4158 aa18.3■□□□□ 0.52
PTPRF-216ENST00000617451 TRAV14DV4A0A0A6YYC5 116 aa18.29■□□□□ 0.52
PTPRF-216ENST00000617451 PHLDA2Q53GA4 152 aa18.29■□□□□ 0.52
PTPRF-216ENST00000617451 ZNF114Q8NC26 417 aa18.29■□□□□ 0.52
PTPRF-216ENST00000617451 IGKV3-7A0A075B6H7 116 aa18.28■□□□□ 0.52
PTPRF-216ENST00000617451 ATP6V1G2O95670 118 aa18.28■□□□□ 0.52
PTPRF-216ENST00000617451 MT-CO2P00403 227 aa18.28■□□□□ 0.52
PTPRF-216ENST00000617451 HRH1P35367 487 aa18.28■□□□□ 0.52
PTPRF-216ENST00000617451 TGFBR1P36897 503 aa18.28■□□□□ 0.52
PTPRF-216ENST00000617451 GBGT1Q8N5D6 347 aa18.28■□□□□ 0.52
PTPRF-216ENST00000617451 SAMD12Q8N8I0 201 aa18.28■□□□□ 0.52
PTPRF-216ENST00000617451 SEC22AQ96IW7 307 aa18.28■□□□□ 0.52
PTPRF-216ENST00000617451 CMTM3Q96MX0 182 aa18.28■□□□□ 0.52
PTPRF-216ENST00000617451 C11orf68Q9H3H3 251 aaKnown RBP18.28■□□□□ 0.52
PTPRF-216ENST00000617451 IGHV3OR16-13A0A075B7E8 117 aa18.27■□□□□ 0.52
PTPRF-216ENST00000617451 IGHV3-74A0A0B4J1X5 117 aa18.27■□□□□ 0.52
PTPRF-216ENST00000617451 IGHV3-48P01763 117 aa18.27■□□□□ 0.52
PTPRF-216ENST00000617451 PRSS3P35030 304 aa18.27■□□□□ 0.52
PTPRF-216ENST00000617451 NANOS2P60321 138 aaKnown RBP18.27■□□□□ 0.52
PTPRF-216ENST00000617451 OR11H2Q8NH07 326 aa18.27■□□□□ 0.52
PTPRF-216ENST00000617451 MFFQ9GZY8 342 aa18.27■□□□□ 0.52
PTPRF-216ENST00000617451 IGKV1-39P01597 117 aa18.26■□□□□ 0.51
PTPRF-216ENST00000617451 IGKV1D-39P04432 117 aa18.26■□□□□ 0.51
PTPRF-216ENST00000617451 HLA-DMAP28067 261 aa18.26■□□□□ 0.51
PTPRF-216ENST00000617451 RPS19P39019 145 aaKnown RBP18.26■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 46.4 ms