RNA–Protein interactions for RNA: ENST00000617445.4

CCDC28A-203, Transcript of coiled-coil domain containing 28A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28A, Length 1,240 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-203ENST00000617445 SEC22AQ96IW7 307 aa14.32□□□□□ -0.12
CCDC28A-203ENST00000617445 NAA50Q9GZZ1 169 aaKnown RBP14.32□□□□□ -0.12
CCDC28A-203ENST00000617445 C5orf66Q9H5L9 145 aa14.32□□□□□ -0.12
CCDC28A-203ENST00000617445 RBMY1BA6NDE4 496 aaKnown RBP14.31□□□□□ -0.12
CCDC28A-203ENST00000617445 RBMY1EA6NEQ0 496 aaKnown RBP14.31□□□□□ -0.12
CCDC28A-203ENST00000617445 OR2T8A6NH00 312 aa14.31□□□□□ -0.12
CCDC28A-203ENST00000617445 NDUFA4O00483 81 aa14.31□□□□□ -0.12
CCDC28A-203ENST00000617445 RBMY1DP0C7P1 496 aaKnown RBP14.31□□□□□ -0.12
CCDC28A-203ENST00000617445 RND3P61587 244 aa14.31□□□□□ -0.12
CCDC28A-203ENST00000617445 RNASE10Q5GAN6 216 aaKnown RBP14.31□□□□□ -0.12
CCDC28A-203ENST00000617445 BTNL8Q6UX41 500 aa14.31□□□□□ -0.12
CCDC28A-203ENST00000617445 IL17DQ8TAD2 202 aa14.31□□□□□ -0.12
CCDC28A-203ENST00000617445 SCARB1Q8WTV0 552 aa14.31□□□□□ -0.12
CCDC28A-203ENST00000617445 DAZ1Q9NQZ3 744 aaKnown RBP14.31□□□□□ -0.12
CCDC28A-203ENST00000617445 K7EMT4 169 aa14.3□□□□□ -0.12
CCDC28A-203ENST00000617445 MFAP2P55001 183 aa14.3□□□□□ -0.12
CCDC28A-203ENST00000617445 MTFP1Q9UDX5 166 aa14.3□□□□□ -0.12
CCDC28A-203ENST00000617445 IGHV3-35A0A0C4DH35 117 aa14.29□□□□□ -0.12
CCDC28A-203ENST00000617445 K7EIM0 57 aa14.29□□□□□ -0.12
CCDC28A-203ENST00000617445 M0QYG6 137 aa14.29□□□□□ -0.12
CCDC28A-203ENST00000617445 ATG12O94817 140 aa14.29□□□□□ -0.12
CCDC28A-203ENST00000617445 SCAF4O95104 1147 aaKnown RBP14.29□□□□□ -0.12
CCDC28A-203ENST00000617445 PRCDQ00LT1 54 aa14.29□□□□□ -0.12
CCDC28A-203ENST00000617445 LAMTOR1Q6IAA8 161 aa14.29□□□□□ -0.12
CCDC28A-203ENST00000617445 LHFPL1Q86WI0 220 aa14.29□□□□□ -0.12
CCDC28A-203ENST00000617445 OR2C3Q8N628 320 aa14.29□□□□□ -0.12
CCDC28A-203ENST00000617445 ZNF114Q8NC26 417 aa14.29□□□□□ -0.12
CCDC28A-203ENST00000617445 TXN2Q99757 166 aa14.29□□□□□ -0.12
CCDC28A-203ENST00000617445 SPAG8Q99932 426 aaPredicted RBP14.29□□□□□ -0.12
CCDC28A-203ENST00000617445 EXTL2Q9UBQ6 330 aa14.29□□□□□ -0.12
CCDC28A-203ENST00000617445 KLK11Q9UBX7 282 aa14.29□□□□□ -0.12
CCDC28A-203ENST00000617445 TENM2Q9NT68 2774 aa14.28□□□□□ -0.12
CCDC28A-203ENST00000617445 DBX1A6NMT0 343 aa14.28□□□□□ -0.12
CCDC28A-203ENST00000617445 IGKV1-39P01597 117 aa14.28□□□□□ -0.12
CCDC28A-203ENST00000617445 IGKV1D-39P04432 117 aa14.28□□□□□ -0.12
CCDC28A-203ENST00000617445 PGAM2P15259 253 aa14.28□□□□□ -0.12
CCDC28A-203ENST00000617445 FCGR2BP31994 310 aaPredicted RBP14.28□□□□□ -0.12
CCDC28A-203ENST00000617445 HSPE1P61604 102 aaKnown RBP14.28□□□□□ -0.12
CCDC28A-203ENST00000617445 ERHP84090 104 aaKnown RBP14.28□□□□□ -0.12
CCDC28A-203ENST00000617445 Q56UQ5 140 aa14.28□□□□□ -0.12
CCDC28A-203ENST00000617445 OR52I2Q8NH67 350 aa14.28□□□□□ -0.12
CCDC28A-203ENST00000617445 WFDC10AQ9H1F0 79 aa14.28□□□□□ -0.12
CCDC28A-203ENST00000617445 C15orf62A8K5M9 175 aa14.27□□□□□ -0.13
CCDC28A-203ENST00000617445 TSPAN4O14817 238 aa14.27□□□□□ -0.13
CCDC28A-203ENST00000617445 CD3DP04234 171 aa14.27□□□□□ -0.13
CCDC28A-203ENST00000617445 SSBP1Q04837 148 aaKnown RBP14.27□□□□□ -0.13
CCDC28A-203ENST00000617445 RELQ04864 619 aaPredicted RBP14.27□□□□□ -0.13
CCDC28A-203ENST00000617445 ZFAND1Q8TCF1 268 aa14.27□□□□□ -0.13
CCDC28A-203ENST00000617445 MRGPRFQ96AM1 343 aa14.27□□□□□ -0.13
CCDC28A-203ENST00000617445 CHRDL1Q9BU40 450 aa14.27□□□□□ -0.13
CCDC28A-203ENST00000617445 LOC102724200A0A096LPH7 203 aaPredicted RBP14.26□□□□□ -0.13
CCDC28A-203ENST00000617445 F8W735 103 aaPredicted RBP14.26□□□□□ -0.13
CCDC28A-203ENST00000617445 NUPL2O15504 423 aaKnown RBP14.26□□□□□ -0.13
CCDC28A-203ENST00000617445 B3GALNT1O75752 331 aa14.26□□□□□ -0.13
CCDC28A-203ENST00000617445 CTSGP08311 255 aa14.26□□□□□ -0.13
CCDC28A-203ENST00000617445 ADMP35318 185 aa14.26□□□□□ -0.13
CCDC28A-203ENST00000617445 RPL5P46777 297 aaKnown RBP14.26□□□□□ -0.13
CCDC28A-203ENST00000617445 MFAP4P55083 255 aa14.26□□□□□ -0.13
CCDC28A-203ENST00000617445 PIGPP57054 158 aa14.26□□□□□ -0.13
CCDC28A-203ENST00000617445 TAS2R19P59542 299 aa14.26□□□□□ -0.13
CCDC28A-203ENST00000617445 MRPS10P82664 201 aaKnown RBP14.26□□□□□ -0.13
CCDC28A-203ENST00000617445 ZFAND6Q6FIF0 208 aa14.26□□□□□ -0.13
CCDC28A-203ENST00000617445 TMEM229BQ8NBD8 167 aa14.26□□□□□ -0.13
CCDC28A-203ENST00000617445 UBAC2Q8NBM4 344 aa14.26□□□□□ -0.13
CCDC28A-203ENST00000617445 TERB2Q8NHR7 220 aa14.26□□□□□ -0.13
CCDC28A-203ENST00000617445 ABHD1Q96SE0 405 aa14.26□□□□□ -0.13
CCDC28A-203ENST00000617445 BCL7BQ9BQE9 202 aa14.26□□□□□ -0.13
CCDC28A-203ENST00000617445 GGTLC1Q9BX51 225 aa14.26□□□□□ -0.13
CCDC28A-203ENST00000617445 RYR3Q15413 4870 aa14.26□□□□□ -0.13
CCDC28A-203ENST00000617445 IGHV3-21A0A0B4J1V1 117 aa14.25□□□□□ -0.13
CCDC28A-203ENST00000617445 I3L2K1 104 aa14.25□□□□□ -0.13
CCDC28A-203ENST00000617445 CD74P04233 296 aa14.25□□□□□ -0.13
CCDC28A-203ENST00000617445 CLVS1Q8IUQ0 354 aaPredicted RBP14.25□□□□□ -0.13
CCDC28A-203ENST00000617445 CCDC71LQ8N9Z2 235 aa14.25□□□□□ -0.13
CCDC28A-203ENST00000617445 RAB2BQ8WUD1 216 aa14.25□□□□□ -0.13
CCDC28A-203ENST00000617445 MISP3Q96FF7 219 aa14.25□□□□□ -0.13
CCDC28A-203ENST00000617445 C20orf24Q9BUV8 137 aa14.25□□□□□ -0.13
CCDC28A-203ENST00000617445 RETNQ9HD89 108 aa14.25□□□□□ -0.13
CCDC28A-203ENST00000617445 COPZ2Q9P299 210 aa14.25□□□□□ -0.13
CCDC28A-203ENST00000617445 RABL2AQ9UBK7 228 aaPredicted RBP14.25□□□□□ -0.13
CCDC28A-203ENST00000617445 RABL2BQ9UNT1 228 aa14.25□□□□□ -0.13
CCDC28A-203ENST00000617445 SELENOKQ9Y6D0 94 aa14.25□□□□□ -0.13
CCDC28A-203ENST00000617445 C3orf85A0A1B0GTC6 90 aa14.24□□□□□ -0.13
CCDC28A-203ENST00000617445 INS-IGF2F8WCM5 200 aa14.24□□□□□ -0.13
CCDC28A-203ENST00000617445 GABARAPH6UMI1 98 aa14.24□□□□□ -0.13
CCDC28A-203ENST00000617445 TMBIM6P55061 237 aa14.24□□□□□ -0.13
CCDC28A-203ENST00000617445 RNASE12Q5GAN4 147 aaKnown RBP14.24□□□□□ -0.13
CCDC28A-203ENST00000617445 FAM110AQ9BQ89 295 aa14.24□□□□□ -0.13
CCDC28A-203ENST00000617445 CSMD3Q7Z407 3707 aa14.24□□□□□ -0.13
CCDC28A-203ENST00000617445 LCE6AA0A183 80 aa14.23□□□□□ -0.13
CCDC28A-203ENST00000617445 RAB3DO95716 219 aa14.23□□□□□ -0.13
CCDC28A-203ENST00000617445 AKR1C2P52895 323 aa14.23□□□□□ -0.13
CCDC28A-203ENST00000617445 TP53RKQ96S44 253 aa14.23□□□□□ -0.13
CCDC28A-203ENST00000617445 OR4C46A6NHA9 309 aa14.22□□□□□ -0.13
CCDC28A-203ENST00000617445 RGS5O15539 181 aa14.22□□□□□ -0.13
CCDC28A-203ENST00000617445 MT-CO2P00403 227 aa14.22□□□□□ -0.13
CCDC28A-203ENST00000617445 IGKV1-5P01602 117 aa14.22□□□□□ -0.13
CCDC28A-203ENST00000617445 P0C879 139 aa14.22□□□□□ -0.13
CCDC28A-203ENST00000617445 PI3P19957 117 aa14.22□□□□□ -0.13
CCDC28A-203ENST00000617445 SNCAP37840 140 aa14.22□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms