RNA–Protein interactions for RNA: ENST00000599716.5

SHKBP1-220, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 572 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-220ENST00000599716 NQO2P16083 231 aa6.31□□□□□ -1.4
SHKBP1-220ENST00000599716 TAS2R31P59538 309 aa6.31□□□□□ -1.4
SHKBP1-220ENST00000599716 MXD1Q05195 221 aa6.31□□□□□ -1.4
SHKBP1-220ENST00000599716 TBCEQ15813 527 aaPredicted RBP6.31□□□□□ -1.4
SHKBP1-220ENST00000599716 AADACL3Q5VUY0 350 aa6.31□□□□□ -1.4
SHKBP1-220ENST00000599716 ZNF367Q7RTV3 350 aa6.31□□□□□ -1.4
SHKBP1-220ENST00000599716 OR4A5Q8NH83 315 aa6.31□□□□□ -1.4
SHKBP1-220ENST00000599716 VN1R17PQ8TDU5 208 aa6.31□□□□□ -1.4
SHKBP1-220ENST00000599716 GIMAP1Q8WWP7 306 aa6.31□□□□□ -1.4
SHKBP1-220ENST00000599716 SLC25A38Q96DW6 304 aa6.31□□□□□ -1.4
SHKBP1-220ENST00000599716 BSCL2Q96G97 398 aaPredicted RBP6.31□□□□□ -1.4
SHKBP1-220ENST00000599716 RHPN1-AS1Q9BWJ2 59 aa6.31□□□□□ -1.4
SHKBP1-220ENST00000599716 RHBDL2Q9NX52 303 aa6.31□□□□□ -1.4
SHKBP1-220ENST00000599716 SMPXQ9UHP9 88 aa6.31□□□□□ -1.4
SHKBP1-220ENST00000599716 APLNQ9ULZ1 77 aa6.31□□□□□ -1.4
SHKBP1-220ENST00000599716 RRP15Q9Y3B9 282 aaKnown RBP6.31□□□□□ -1.4
SHKBP1-220ENST00000599716 F11RQ9Y624 299 aaKnown RBP6.31□□□□□ -1.4
SHKBP1-220ENST00000599716 DNAH5Q8TE73 4624 aa6.3□□□□□ -1.4
SHKBP1-220ENST00000599716 IGHV7-4-1A0A0J9YVY3 117 aa6.3□□□□□ -1.4
SHKBP1-220ENST00000599716 NOTOA8MTQ0 251 aa6.3□□□□□ -1.4
SHKBP1-220ENST00000599716 J3QL48 77 aa6.3□□□□□ -1.4
SHKBP1-220ENST00000599716 NDUFA4O00483 81 aa6.3□□□□□ -1.4
SHKBP1-220ENST00000599716 NUPL2O15504 423 aaKnown RBP6.3□□□□□ -1.4
SHKBP1-220ENST00000599716 HPRT1P00492 218 aa6.3□□□□□ -1.4
SHKBP1-220ENST00000599716 KRASP01116 189 aa6.3□□□□□ -1.4
SHKBP1-220ENST00000599716 IFNA4P05014 189 aa6.3□□□□□ -1.4
SHKBP1-220ENST00000599716 ATF4P18848 351 aaPredicted RBP6.3□□□□□ -1.4
SHKBP1-220ENST00000599716 G6PCP35575 357 aa6.3□□□□□ -1.4
SHKBP1-220ENST00000599716 SPINK9Q5DT21 86 aa6.3□□□□□ -1.4
SHKBP1-220ENST00000599716 SFXN4Q6P4A7 337 aa6.3□□□□□ -1.4
SHKBP1-220ENST00000599716 ZNF767PQ75MW2 155 aa6.3□□□□□ -1.4
SHKBP1-220ENST00000599716 TMEM116Q8NCL8 245 aa6.3□□□□□ -1.4
SHKBP1-220ENST00000599716 C2CD4CQ8TF44 421 aa6.3□□□□□ -1.4
SHKBP1-220ENST00000599716 FCAMRQ8WWV6 532 aa6.3□□□□□ -1.4
SHKBP1-220ENST00000599716 MISP3Q96FF7 219 aa6.3□□□□□ -1.4
SHKBP1-220ENST00000599716 SCRT1Q9BWW7 348 aa6.3□□□□□ -1.4
SHKBP1-220ENST00000599716 NDUFA4L2Q9NRX3 87 aa6.3□□□□□ -1.4
SHKBP1-220ENST00000599716 TXNL4BQ9NX01 149 aaKnown RBP6.3□□□□□ -1.4
SHKBP1-220ENST00000599716 THYN1Q9P016 225 aa6.3□□□□□ -1.4
SHKBP1-220ENST00000599716 OR51B2Q9Y5P1 312 aa6.3□□□□□ -1.4
SHKBP1-220ENST00000599716 ETV7Q9Y603 341 aa6.3□□□□□ -1.4
SHKBP1-220ENST00000599716 MARCH11A6NNE9 402 aa6.29□□□□□ -1.4
SHKBP1-220ENST00000599716 RBFOX2O43251 390 aaKnown RBP eCLIP6.29□□□□□ -1.4
SHKBP1-220ENST00000599716 RBMY1A1P0DJD3 496 aaKnown RBP6.29□□□□□ -1.4
SHKBP1-220ENST00000599716 RBMY1CP0DJD4 496 aa6.29□□□□□ -1.4
SHKBP1-220ENST00000599716 PSMB9P28065 219 aa6.29□□□□□ -1.4
SHKBP1-220ENST00000599716 GNRHRP30968 328 aa6.29□□□□□ -1.4
SHKBP1-220ENST00000599716 SDC2P34741 201 aa6.29□□□□□ -1.4
SHKBP1-220ENST00000599716 LPAR6P43657 344 aa6.29□□□□□ -1.4
SHKBP1-220ENST00000599716 RFX2P48378 723 aa6.29□□□□□ -1.4
SHKBP1-220ENST00000599716 DEFB131AP59861 70 aa6.29□□□□□ -1.4
SHKBP1-220ENST00000599716 CATR1Q13166 79 aa6.29□□□□□ -1.4
SHKBP1-220ENST00000599716 ARL6IP1Q15041 203 aa6.29□□□□□ -1.4
SHKBP1-220ENST00000599716 RBMY1FQ15415 496 aaKnown RBP6.29□□□□□ -1.4
SHKBP1-220ENST00000599716 POU2AF1Q16633 256 aa6.29□□□□□ -1.4
SHKBP1-220ENST00000599716 Q6ZTC4 211 aa6.29□□□□□ -1.4
SHKBP1-220ENST00000599716 TCF24Q7RTU0 167 aa6.29□□□□□ -1.4
SHKBP1-220ENST00000599716 HOGA1Q86XE5 327 aa6.29□□□□□ -1.4
SHKBP1-220ENST00000599716 OR1L8Q8NGR8 309 aa6.29□□□□□ -1.4
SHKBP1-220ENST00000599716 ST8SIA2Q92186 375 aa6.29□□□□□ -1.4
SHKBP1-220ENST00000599716 SLC25A46Q96AG3 418 aa6.29□□□□□ -1.4
SHKBP1-220ENST00000599716 PINX1Q96BK5 328 aaKnown RBP6.29□□□□□ -1.4
SHKBP1-220ENST00000599716 CENPOQ9BU64 300 aa6.29□□□□□ -1.4
SHKBP1-220ENST00000599716 IGHV4-28A0A0C4DH34 117 aa6.28□□□□□ -1.4
SHKBP1-220ENST00000599716 A0A1B0GVY2 172 aa6.28□□□□□ -1.4
SHKBP1-220ENST00000599716 C15orf62A8K5M9 175 aa6.28□□□□□ -1.4
SHKBP1-220ENST00000599716 K7EMT4 169 aa6.28□□□□□ -1.4
SHKBP1-220ENST00000599716 M0R2N4 97 aa6.28□□□□□ -1.4
SHKBP1-220ENST00000599716 DFFBO76075 338 aa6.28□□□□□ -1.4
SHKBP1-220ENST00000599716 GIG44P09565 113 aaPredicted RBP6.28□□□□□ -1.4
SHKBP1-220ENST00000599716 HLA-DMBP28068 263 aa6.28□□□□□ -1.4
SHKBP1-220ENST00000599716 IZUMO4Q1ZYL8 232 aa6.28□□□□□ -1.4
SHKBP1-220ENST00000599716 IDNKQ5T6J7 187 aa6.28□□□□□ -1.4
SHKBP1-220ENST00000599716 FAM90A2PQ658T7 463 aa6.28□□□□□ -1.4
SHKBP1-220ENST00000599716 SPSB3Q6PJ21 355 aa6.28□□□□□ -1.4
SHKBP1-220ENST00000599716 Q8NAQ8 132 aa6.28□□□□□ -1.4
SHKBP1-220ENST00000599716 LSM10Q969L4 123 aaKnown RBP6.28□□□□□ -1.4
SHKBP1-220ENST00000599716 C6orf62Q9GZU0 229 aaPredicted RBP6.28□□□□□ -1.4
SHKBP1-220ENST00000599716 FXYD6Q9H0Q3 95 aa6.28□□□□□ -1.4
SHKBP1-220ENST00000599716 C11orf68Q9H3H3 251 aaKnown RBP6.28□□□□□ -1.4
SHKBP1-220ENST00000599716 AUNIPQ9H7T9 357 aa6.28□□□□□ -1.4
SHKBP1-220ENST00000599716 PLEKHA2Q9HB19 425 aa6.28□□□□□ -1.4
SHKBP1-220ENST00000599716 CLEC5AQ9NY25 188 aa6.28□□□□□ -1.4
SHKBP1-220ENST00000599716 KNCNA6PVL3 124 aa6.27□□□□□ -1.41
SHKBP1-220ENST00000599716 I3L2K1 104 aa6.27□□□□□ -1.41
SHKBP1-220ENST00000599716 ST8SIA3O43173 380 aa6.27□□□□□ -1.41
SHKBP1-220ENST00000599716 PGLYRP1O75594 196 aaPredicted RBP6.27□□□□□ -1.41
SHKBP1-220ENST00000599716 MT-CO2P00403 227 aa6.27□□□□□ -1.41
SHKBP1-220ENST00000599716 PMP2P02689 132 aa6.27□□□□□ -1.41
SHKBP1-220ENST00000599716 C4BPBP20851 252 aa6.27□□□□□ -1.41
SHKBP1-220ENST00000599716 TGFBR1P36897 503 aa6.27□□□□□ -1.41
SHKBP1-220ENST00000599716 RANBP1P43487 201 aa6.27□□□□□ -1.41
SHKBP1-220ENST00000599716 HERV-K104P61576 105 aa6.27□□□□□ -1.41
SHKBP1-220ENST00000599716 ERVK-16P61578 105 aa6.27□□□□□ -1.41
SHKBP1-220ENST00000599716 RPL11P62913 178 aaKnown RBP6.27□□□□□ -1.41
SHKBP1-220ENST00000599716 TMEM187Q14656 261 aa6.27□□□□□ -1.41
SHKBP1-220ENST00000599716 PHLDA2Q53GA4 152 aa6.27□□□□□ -1.41
SHKBP1-220ENST00000599716 TOMM20LQ6UXN7 152 aa6.27□□□□□ -1.41
SHKBP1-220ENST00000599716 IZUMO2Q6UXV1 221 aa6.27□□□□□ -1.41
SHKBP1-220ENST00000599716 LINC00336Q6ZUF6 198 aa6.27□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 58.3 ms