RNA–Protein interactions for RNA: ENST00000577085.1

SF3B3-215, Transcript of splicing factor 3b subunit 3, human

TSL 4

Gene SF3B3, Length 529 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SF3B3-215	ENST00000577085	TM4SF20	Q53R12	229 aa		11.72	□□□□□ -0.53
SF3B3-215	ENST00000577085	STEAP1B	Q6NZ63	245 aa		11.72	□□□□□ -0.53
SF3B3-215	ENST00000577085	SPSB3	Q6PJ21	355 aa		11.72	□□□□□ -0.53
SF3B3-215	ENST00000577085	RBPMS2	Q6ZRY4	209 aa	Known RBP	11.72	□□□□□ -0.53
SF3B3-215	ENST00000577085	TERB2	Q8NHR7	220 aa		11.72	□□□□□ -0.53
SF3B3-215	ENST00000577085	RNASE11	Q8TAA1	199 aa	Known RBP	11.72	□□□□□ -0.53
SF3B3-215	ENST00000577085	MARC2	Q969Z3	335 aa		11.72	□□□□□ -0.53
SF3B3-215	ENST00000577085	WDR89	Q96FK6	387 aa	Predicted RBP	11.72	□□□□□ -0.53
SF3B3-215	ENST00000577085	SEC22A	Q96IW7	307 aa		11.72	□□□□□ -0.53
SF3B3-215	ENST00000577085	TM2D3	Q9BRN9	247 aa		11.72	□□□□□ -0.53
SF3B3-215	ENST00000577085	PDCD10	Q9BUL8	212 aa		11.72	□□□□□ -0.53
SF3B3-215	ENST00000577085	SELENOK	Q9Y6D0	94 aa		11.72	□□□□□ -0.53
SF3B3-215	ENST00000577085	C3orf85	A0A1B0GTC6	90 aa		11.71	□□□□□ -0.53
SF3B3-215	ENST00000577085	CTDSP2	O14595	271 aa		11.71	□□□□□ -0.53
SF3B3-215	ENST00000577085	TMBIM6	P55061	237 aa		11.71	□□□□□ -0.53
SF3B3-215	ENST00000577085	ERH	P84090	104 aa	Known RBP	11.71	□□□□□ -0.53
SF3B3-215	ENST00000577085	MEF2D	Q14814	521 aa		11.71	□□□□□ -0.53
SF3B3-215	ENST00000577085	ANKRD55	Q3KP44	614 aa		11.71	□□□□□ -0.53
SF3B3-215	ENST00000577085	BTNL8	Q6UX41	500 aa		11.71	□□□□□ -0.53
SF3B3-215	ENST00000577085	UNQ9165/PRO28630	Q6UXU0	137 aa		11.71	□□□□□ -0.53
SF3B3-215	ENST00000577085	LHFPL1	Q86WI0	220 aa		11.71	□□□□□ -0.53
SF3B3-215	ENST00000577085	OR52B4	Q8NGK2	314 aa		11.71	□□□□□ -0.53
SF3B3-215	ENST00000577085	OR1P1	Q8NH06	330 aa		11.71	□□□□□ -0.53
SF3B3-215	ENST00000577085	SCARB1	Q8WTV0	552 aa		11.71	□□□□□ -0.53
SF3B3-215	ENST00000577085	MISP3	Q96FF7	219 aa		11.71	□□□□□ -0.53
SF3B3-215	ENST00000577085	DIRAS2	Q96HU8	199 aa		11.71	□□□□□ -0.53
SF3B3-215	ENST00000577085	BCL7B	Q9BQE9	202 aa		11.71	□□□□□ -0.53
SF3B3-215	ENST00000577085	C6orf62	Q9GZU0	229 aa	Predicted RBP	11.71	□□□□□ -0.53
SF3B3-215	ENST00000577085	GAR1	Q9NY12	217 aa	Known RBP	11.71	□□□□□ -0.53
SF3B3-215	ENST00000577085	MRPL27	Q9P0M9	148 aa	Known RBP	11.71	□□□□□ -0.53
SF3B3-215	ENST00000577085	RABL2A	Q9UBK7	228 aa	Predicted RBP	11.71	□□□□□ -0.53
SF3B3-215	ENST00000577085	RABL2B	Q9UNT1	228 aa		11.71	□□□□□ -0.53
SF3B3-215	ENST00000577085	C14orf166	Q9Y224	244 aa	Known RBP	11.71	□□□□□ -0.53
SF3B3-215	ENST00000577085	DBX1	A6NMT0	343 aa		11.7	□□□□□ -0.54
SF3B3-215	ENST00000577085	ZNF785	A8K8V0	405 aa		11.7	□□□□□ -0.54
SF3B3-215	ENST00000577085	OR11H12	B2RN74	326 aa		11.7	□□□□□ -0.54
SF3B3-215	ENST00000577085	DISC1	C4P0D8	188 aa		11.7	□□□□□ -0.54
SF3B3-215	ENST00000577085	SCAF4	O95104	1147 aa	Known RBP	11.7	□□□□□ -0.54
SF3B3-215	ENST00000577085	IGKV1-39	P01597	117 aa		11.7	□□□□□ -0.54
SF3B3-215	ENST00000577085	IGKV1D-39	P04432	117 aa		11.7	□□□□□ -0.54
SF3B3-215	ENST00000577085	CD7	P09564	240 aa		11.7	□□□□□ -0.54
SF3B3-215	ENST00000577085	ELL	P55199	621 aa	Predicted RBP	11.7	□□□□□ -0.54
SF3B3-215	ENST00000577085	HSPE1	P61604	102 aa	Known RBP	11.7	□□□□□ -0.54
SF3B3-215	ENST00000577085	HAGH	Q16775	308 aa		11.7	□□□□□ -0.54
SF3B3-215	ENST00000577085	TMEM61	Q8N0U2	210 aa		11.7	□□□□□ -0.54
SF3B3-215	ENST00000577085	SLC35G3	Q8N808	338 aa		11.7	□□□□□ -0.54
SF3B3-215	ENST00000577085	OR4D10	Q8NGI6	311 aa		11.7	□□□□□ -0.54
SF3B3-215	ENST00000577085	MUC7	Q8TAX7	377 aa		11.7	□□□□□ -0.54
SF3B3-215	ENST00000577085	RRNAD1	Q96FB5	475 aa	Known RBP	11.7	□□□□□ -0.54
SF3B3-215	ENST00000577085	ATP6V0B	Q99437	205 aa		11.7	□□□□□ -0.54
SF3B3-215	ENST00000577085	C20orf24	Q9BUV8	137 aa		11.7	□□□□□ -0.54
SF3B3-215	ENST00000577085	MIXL1	Q9H2W2	232 aa		11.7	□□□□□ -0.54
SF3B3-215	ENST00000577085	CCDC59	Q9P031	241 aa	Known RBP	11.7	□□□□□ -0.54
SF3B3-215	ENST00000577085	MLX	Q9UH92	298 aa		11.7	□□□□□ -0.54
SF3B3-215	ENST00000577085	CEPT1	Q9Y6K0	416 aa		11.7	□□□□□ -0.54
SF3B3-215	ENST00000577085	NUPL2	O15504	423 aa	Known RBP	11.69	□□□□□ -0.54
SF3B3-215	ENST00000577085	B3GALNT1	O75752	331 aa		11.69	□□□□□ -0.54
SF3B3-215	ENST00000577085	IFNA17	P01571	189 aa		11.69	□□□□□ -0.54
SF3B3-215	ENST00000577085	CD74	P04233	296 aa		11.69	□□□□□ -0.54
SF3B3-215	ENST00000577085	SNCA	P37840	140 aa		11.69	□□□□□ -0.54
SF3B3-215	ENST00000577085	RPL5	P46777	297 aa	Known RBP	11.69	□□□□□ -0.54
SF3B3-215	ENST00000577085	MFAP2	P55001	183 aa		11.69	□□□□□ -0.54
SF3B3-215	ENST00000577085	PRCD	Q00LT1	54 aa		11.69	□□□□□ -0.54
SF3B3-215	ENST00000577085	OR2C3	Q8N628	320 aa		11.69	□□□□□ -0.54
SF3B3-215	ENST00000577085	DEFB125	Q8N687	156 aa		11.69	□□□□□ -0.54
SF3B3-215	ENST00000577085	OR13C8	Q8NGS7	320 aa		11.69	□□□□□ -0.54
SF3B3-215	ENST00000577085	MARCH1	Q8TCQ1	289 aa		11.69	□□□□□ -0.54
SF3B3-215	ENST00000577085	PINX1	Q96BK5	328 aa	Known RBP	11.69	□□□□□ -0.54
SF3B3-215	ENST00000577085	ISOC1	Q96CN7	298 aa		11.69	□□□□□ -0.54
SF3B3-215	ENST00000577085	TP53RK	Q96S44	253 aa		11.69	□□□□□ -0.54
SF3B3-215	ENST00000577085	ZNF436	Q9C0F3	470 aa	Predicted RBP	11.69	□□□□□ -0.54
SF3B3-215	ENST00000577085	SRD5A3	Q9H8P0	318 aa		11.69	□□□□□ -0.54
SF3B3-215	ENST00000577085	DAZ1	Q9NQZ3	744 aa	Known RBP	11.69	□□□□□ -0.54
SF3B3-215	ENST00000577085	TEX13D	A0A0J9YY54	714 aa	Predicted RBP	11.68	□□□□□ -0.54
SF3B3-215	ENST00000577085	NDUFA4	O00483	81 aa		11.68	□□□□□ -0.54
SF3B3-215	ENST00000577085	LYL1	P12980	280 aa		11.68	□□□□□ -0.54
SF3B3-215	ENST00000577085	REL	Q04864	619 aa	Predicted RBP	11.68	□□□□□ -0.54
SF3B3-215	ENST00000577085	SP6	Q3SY56	376 aa		11.68	□□□□□ -0.54
SF3B3-215	ENST00000577085	LAMTOR1	Q6IAA8	161 aa		11.68	□□□□□ -0.54
SF3B3-215	ENST00000577085	SMIM4	Q8WVI0	70 aa		11.68	□□□□□ -0.54
SF3B3-215	ENST00000577085	TMEM190	Q8WZ59	177 aa		11.68	□□□□□ -0.54
SF3B3-215	ENST00000577085	ENY2	Q9NPA8	101 aa		11.68	□□□□□ -0.54
SF3B3-215	ENST00000577085	TRAV25	A0A0B4J276	109 aa		11.67	□□□□□ -0.54
SF3B3-215	ENST00000577085		K7EIM0	57 aa		11.67	□□□□□ -0.54
SF3B3-215	ENST00000577085	YIF1A	O95070	293 aa		11.67	□□□□□ -0.54
SF3B3-215	ENST00000577085	CTSD	P07339	412 aa	Predicted RBP	11.67	□□□□□ -0.54
SF3B3-215	ENST00000577085	AKAIN1	P0CW23	69 aa		11.67	□□□□□ -0.54
SF3B3-215	ENST00000577085	HOXA1	P49639	335 aa	Predicted RBP	11.67	□□□□□ -0.54
SF3B3-215	ENST00000577085	SUB1	P53999	127 aa	Known RBP eCLIP	11.67	□□□□□ -0.54	1e-9	■■■■■ 39.5
SF3B3-215	ENST00000577085	MFAP4	P55083	255 aa		11.67	□□□□□ -0.54
SF3B3-215	ENST00000577085	IZUMO4	Q1ZYL8	232 aa		11.67	□□□□□ -0.54
SF3B3-215	ENST00000577085	SPINK9	Q5DT21	86 aa		11.67	□□□□□ -0.54
SF3B3-215	ENST00000577085	FAAP20	Q6NZ36	180 aa		11.67	□□□□□ -0.54
SF3B3-215	ENST00000577085	DYNC2LI1	Q8TCX1	351 aa		11.67	□□□□□ -0.54
SF3B3-215	ENST00000577085	CITED4	Q96RK1	184 aa		11.67	□□□□□ -0.54
SF3B3-215	ENST00000577085	PRRT1	Q99946	306 aa		11.67	□□□□□ -0.54
SF3B3-215	ENST00000577085	RSL24D1	Q9UHA3	163 aa	Known RBP	11.67	□□□□□ -0.54
SF3B3-215	ENST00000577085	CTDSPL	O15194	276 aa		11.66	□□□□□ -0.54
SF3B3-215	ENST00000577085	GNG7	O60262	68 aa		11.66	□□□□□ -0.54
SF3B3-215	ENST00000577085	IGKV1-5	P01602	117 aa		11.66	□□□□□ -0.54

Retrieved 100 of 20,778 RNA–protein pairs in 76.1 ms