RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 SNAPC5O75971 98 aa12.69□□□□□ -0.38
CLN3-216ENST00000565316 G6PCP35575 357 aa12.69□□□□□ -0.38
CLN3-216ENST00000565316 KIR2DL5AQ8N109 375 aa12.69□□□□□ -0.38
CLN3-216ENST00000565316 OR6F1Q8NGZ6 308 aa12.69□□□□□ -0.38
CLN3-216ENST00000565316 KIR2DL5BQ8NHK3 375 aa12.69□□□□□ -0.38
CLN3-216ENST00000565316 FKBP11Q9NYL4 201 aa12.69□□□□□ -0.38
CLN3-216ENST00000565316 A0A0J9YWU9 116 aa12.68□□□□□ -0.38
CLN3-216ENST00000565316 DBX1A6NMT0 343 aa12.68□□□□□ -0.38
CLN3-216ENST00000565316 C15orf62A8K5M9 175 aa12.68□□□□□ -0.38
CLN3-216ENST00000565316 CTSGP08311 255 aa12.68□□□□□ -0.38
CLN3-216ENST00000565316 ATF4P18848 351 aaPredicted RBP12.68□□□□□ -0.38
CLN3-216ENST00000565316 PRSS3P35030 304 aa12.68□□□□□ -0.38
CLN3-216ENST00000565316 BMI1P35226 326 aa12.68□□□□□ -0.38
CLN3-216ENST00000565316 EWSR1Q01844 656 aaKnown RBP eCLIP12.68□□□□□ -0.38
CLN3-216ENST00000565316 OR1P1Q8NH06 330 aa12.68□□□□□ -0.38
CLN3-216ENST00000565316 LINC00476Q8WZB0 136 aa12.68□□□□□ -0.38
CLN3-216ENST00000565316 YIPF6Q96EC8 236 aa12.68□□□□□ -0.38
CLN3-216ENST00000565316 TMEM56Q96MV1 263 aa12.68□□□□□ -0.38
CLN3-216ENST00000565316 UBQLN2Q9UHD9 624 aa12.68□□□□□ -0.38
CLN3-216ENST00000565316 OR4C46A6NHA9 309 aa12.67□□□□□ -0.38
CLN3-216ENST00000565316 C15orf61A6NNL5 157 aa12.67□□□□□ -0.38
CLN3-216ENST00000565316 FCGR2BP31994 310 aaPredicted RBP12.67□□□□□ -0.38
CLN3-216ENST00000565316 HRH1P35367 487 aa12.67□□□□□ -0.38
CLN3-216ENST00000565316 LYG2Q86SG7 212 aa12.67□□□□□ -0.38
CLN3-216ENST00000565316 TSPAN14Q8NG11 270 aa12.67□□□□□ -0.38
CLN3-216ENST00000565316 GPX8Q8TED1 209 aa12.67□□□□□ -0.38
CLN3-216ENST00000565316 RNF183Q96D59 192 aa12.67□□□□□ -0.38
CLN3-216ENST00000565316 TSC22D3Q99576 134 aa12.67□□□□□ -0.38
CLN3-216ENST00000565316 C20orf24Q9BUV8 137 aa12.67□□□□□ -0.38
CLN3-216ENST00000565316 SMPXQ9UHP9 88 aa12.67□□□□□ -0.38
CLN3-216ENST00000565316 IGHV3OR16-8A0A075B7F1 116 aa12.66□□□□□ -0.38
CLN3-216ENST00000565316 CTSDP07339 412 aaPredicted RBP12.66□□□□□ -0.38
CLN3-216ENST00000565316 DEFB135Q30KP9 77 aa12.66□□□□□ -0.38
CLN3-216ENST00000565316 Q56UQ5 140 aa12.66□□□□□ -0.38
CLN3-216ENST00000565316 LPCAT3Q6P1A2 487 aa12.66□□□□□ -0.38
CLN3-216ENST00000565316 STPG3Q8N7X2 389 aa12.66□□□□□ -0.38
CLN3-216ENST00000565316 SEC22AQ96IW7 307 aa12.66□□□□□ -0.38
CLN3-216ENST00000565316 CXorf65A6NEN9 183 aa12.65□□□□□ -0.38
CLN3-216ENST00000565316 NUPR2A6NF83 97 aa12.65□□□□□ -0.38
CLN3-216ENST00000565316 I3L2K1 104 aa12.65□□□□□ -0.38
CLN3-216ENST00000565316 ZNF207O43670 478 aaKnown RBP12.65□□□□□ -0.38
CLN3-216ENST00000565316 HLA-DMAP28067 261 aa12.65□□□□□ -0.38
CLN3-216ENST00000565316 PHLDA2Q53GA4 152 aa12.65□□□□□ -0.38
CLN3-216ENST00000565316 UBAC2Q8NBM4 344 aa12.65□□□□□ -0.38
CLN3-216ENST00000565316 ZNF114Q8NC26 417 aa12.65□□□□□ -0.38
CLN3-216ENST00000565316 SLC25A46Q96AG3 418 aa12.65□□□□□ -0.38
CLN3-216ENST00000565316 GALNT14Q96FL9 552 aa12.65□□□□□ -0.38
CLN3-216ENST00000565316 OR10C1Q96KK4 312 aa12.65□□□□□ -0.38
CLN3-216ENST00000565316 TXN2Q99757 166 aa12.65□□□□□ -0.38
CLN3-216ENST00000565316 KMT2AQ03164 3969 aa12.65□□□□□ -0.38
CLN3-216ENST00000565316 IGHV7-4-1A0A0J9YVY3 117 aa12.64□□□□□ -0.39
CLN3-216ENST00000565316 IGKV1-39P01597 117 aa12.64□□□□□ -0.39
CLN3-216ENST00000565316 IGKV1D-39P04432 117 aa12.64□□□□□ -0.39
CLN3-216ENST00000565316 EIF4EP06730 217 aaKnown RBP12.64□□□□□ -0.39
CLN3-216ENST00000565316 UCP3P55916 312 aa12.64□□□□□ -0.39
CLN3-216ENST00000565316 LSM3P62310 102 aaKnown RBP12.64□□□□□ -0.39
CLN3-216ENST00000565316 RELQ04864 619 aaPredicted RBP12.64□□□□□ -0.39
CLN3-216ENST00000565316 PMS2P11Q13670 270 aa12.64□□□□□ -0.39
CLN3-216ENST00000565316 CEMP1Q6PRD7 247 aaPredicted RBP12.64□□□□□ -0.39
CLN3-216ENST00000565316 CMTM3Q96MX0 182 aa12.64□□□□□ -0.39
CLN3-216ENST00000565316 RNF2Q99496 336 aa12.64□□□□□ -0.39
CLN3-216ENST00000565316 MAP6D1Q9H9H5 199 aa12.64□□□□□ -0.39
CLN3-216ENST00000565316 SCPEP1Q9HB40 452 aa12.64□□□□□ -0.39
CLN3-216ENST00000565316 CHEK1O14757 476 aa12.63□□□□□ -0.39
CLN3-216ENST00000565316 NUPL2O15504 423 aaKnown RBP12.63□□□□□ -0.39
CLN3-216ENST00000565316 S100GP29377 79 aa12.63□□□□□ -0.39
CLN3-216ENST00000565316 TBC1D26Q86UD7 250 aa12.63□□□□□ -0.39
CLN3-216ENST00000565316 TMEM116Q8NCL8 245 aa12.63□□□□□ -0.39
CLN3-216ENST00000565316 RHPN1-AS1Q9BWJ2 59 aa12.63□□□□□ -0.39
CLN3-216ENST00000565316 APOA1P02647 267 aa12.62□□□□□ -0.39
CLN3-216ENST00000565316 RPL35AP18077 110 aaKnown RBP12.62□□□□□ -0.39
CLN3-216ENST00000565316 MFAP4P55083 255 aa12.62□□□□□ -0.39
CLN3-216ENST00000565316 CMC4P56277 68 aaPredicted RBP12.62□□□□□ -0.39
CLN3-216ENST00000565316 TSPAN5P62079 268 aa12.62□□□□□ -0.39
CLN3-216ENST00000565316 PRCDQ00LT1 54 aa12.62□□□□□ -0.39
CLN3-216ENST00000565316 H2BFWTQ7Z2G1 175 aa12.62□□□□□ -0.39
CLN3-216ENST00000565316 OR4A16Q8NH70 328 aa12.62□□□□□ -0.39
CLN3-216ENST00000565316 NXF2Q9GZY0 626 aaKnown RBP12.62□□□□□ -0.39
CLN3-216ENST00000565316 FRAS1Q86XX4 4008 aa12.62□□□□□ -0.39
CLN3-216ENST00000565316 A0A087WXM4 84 aa12.62□□□□□ -0.39
CLN3-216ENST00000565316 MT-CO2P00403 227 aa12.62□□□□□ -0.39
CLN3-216ENST00000565316 RCVRNP35243 200 aa12.62□□□□□ -0.39
CLN3-216ENST00000565316 HSPE1P61604 102 aaKnown RBP12.62□□□□□ -0.39
CLN3-216ENST00000565316 FAM90A2PQ658T7 463 aa12.62□□□□□ -0.39
CLN3-216ENST00000565316 TMEM217Q8N7C4 229 aa12.62□□□□□ -0.39
CLN3-216ENST00000565316 MISP3Q96FF7 219 aa12.62□□□□□ -0.39
CLN3-216ENST00000565316 C6orf62Q9GZU0 229 aaPredicted RBP12.62□□□□□ -0.39
CLN3-216ENST00000565316 DNAH10Q8IVF4 4471 aa12.61□□□□□ -0.39
CLN3-216ENST00000565316 SMIM31A0A1B0GVY4 71 aa12.61□□□□□ -0.39
CLN3-216ENST00000565316 LY6G6CO95867 125 aa12.61□□□□□ -0.39
CLN3-216ENST00000565316 APRG1Q8IVJ8 170 aa12.61□□□□□ -0.39
CLN3-216ENST00000565316 MRGPRFQ96AM1 343 aa12.61□□□□□ -0.39
CLN3-216ENST00000565316 VCX3AQ9NNX9 186 aa12.61□□□□□ -0.39
CLN3-216ENST00000565316 COMMD3Q9UBI1 195 aa12.61□□□□□ -0.39
CLN3-216ENST00000565316 TRAV14DV4A0A0A6YYC5 116 aa12.6□□□□□ -0.39
CLN3-216ENST00000565316 YIF1AO95070 293 aa12.6□□□□□ -0.39
CLN3-216ENST00000565316 RND3P61587 244 aa12.6□□□□□ -0.39
CLN3-216ENST00000565316 SNX29P2Q8IUI4 249 aa12.6□□□□□ -0.39
CLN3-216ENST00000565316 CSTL1Q9H114 145 aa12.6□□□□□ -0.39
CLN3-216ENST00000565316 KLK5Q9Y337 293 aaPredicted RBP12.6□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 86.4 ms