RNA–Protein interactions for RNA: ENST00000553340.1

SYNE3-202, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 1 (best) BASIC

Gene SYNE3, Length 2,615 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-202ENST00000553340 KIR2DL2P43627 348 aaPredicted RBP14.38□□□□□ -0.11
SYNE3-202ENST00000553340 ZNF83P51522 516 aa14.38□□□□□ -0.11
SYNE3-202ENST00000553340 RTL8BQ17RB0 113 aa14.38□□□□□ -0.11
SYNE3-202ENST00000553340 UTF1Q5T230 341 aa14.38□□□□□ -0.11
SYNE3-202ENST00000553340 VWA1Q6PCB0 445 aa14.38□□□□□ -0.11
SYNE3-202ENST00000553340 STARD4Q96DR4 205 aa14.38□□□□□ -0.11
SYNE3-202ENST00000553340 ZNF503Q96F45 646 aa14.38□□□□□ -0.11
SYNE3-202ENST00000553340 ADTRPQ96IZ2 230 aa14.38□□□□□ -0.11
SYNE3-202ENST00000553340 PRNDQ9UKY0 176 aa14.38□□□□□ -0.11
SYNE3-202ENST00000553340 PRR14LQ5THK1 2151 aa14.38□□□□□ -0.11
SYNE3-202ENST00000553340 GGTLC3B5MD39 225 aa14.38□□□□□ -0.11
SYNE3-202ENST00000553340 J3QR06 171 aa14.38□□□□□ -0.11
SYNE3-202ENST00000553340 ZNF324O75467 553 aaPredicted RBP14.38□□□□□ -0.11
SYNE3-202ENST00000553340 MMP23AO75900 390 aa14.38□□□□□ -0.11
SYNE3-202ENST00000553340 ATP1A1-AS1Q5TC04 95 aa14.38□□□□□ -0.11
SYNE3-202ENST00000553340 FAM122AQ96E09 287 aa14.38□□□□□ -0.11
SYNE3-202ENST00000553340 C19orf24Q9BVV8 132 aa14.38□□□□□ -0.11
SYNE3-202ENST00000553340 UQCR10Q9UDW1 63 aa14.38□□□□□ -0.11
SYNE3-202ENST00000553340 KNTC1P50748 2209 aa14.37□□□□□ -0.11
SYNE3-202ENST00000553340 SMIM27A0A1W2PRY6 76 aa14.37□□□□□ -0.11
SYNE3-202ENST00000553340 BMPR1BO00238 502 aa14.37□□□□□ -0.11
SYNE3-202ENST00000553340 IGLV1-44P01699 117 aa14.37□□□□□ -0.11
SYNE3-202ENST00000553340 MGST1P10620 155 aaKnown RBP14.37□□□□□ -0.11
SYNE3-202ENST00000553340 CFHR2P36980 270 aa14.37□□□□□ -0.11
SYNE3-202ENST00000553340 PPOXP50336 477 aa14.37□□□□□ -0.11
SYNE3-202ENST00000553340 MRPL54Q6P161 138 aaKnown RBP14.37□□□□□ -0.11
SYNE3-202ENST00000553340 SERTAD4Q9NUC0 356 aa14.37□□□□□ -0.11
SYNE3-202ENST00000553340 REG1AP05451 166 aa14.37□□□□□ -0.11
SYNE3-202ENST00000553340 CGB3P0DN86 165 aa14.37□□□□□ -0.11
SYNE3-202ENST00000553340 CGB7P0DN87 165 aa14.37□□□□□ -0.11
SYNE3-202ENST00000553340 MRPS11P82912 194 aaKnown RBP14.37□□□□□ -0.11
SYNE3-202ENST00000553340 RELQ04864 619 aaPredicted RBP14.37□□□□□ -0.11
SYNE3-202ENST00000553340 POU2AF1Q16633 256 aa14.37□□□□□ -0.11
SYNE3-202ENST00000553340 C17orf58Q2M2W7 97 aa14.37□□□□□ -0.11
SYNE3-202ENST00000553340 LYG1Q8N1E2 194 aa14.37□□□□□ -0.11
SYNE3-202ENST00000553340 DCAF16Q9NXF7 216 aa14.37□□□□□ -0.11
SYNE3-202ENST00000553340 IGHV1-18A0A0C4DH31 117 aa14.36□□□□□ -0.11
SYNE3-202ENST00000553340 A0A1W2PRE2 83 aa14.36□□□□□ -0.11
SYNE3-202ENST00000553340 IGLV2-8P01709 118 aa14.36□□□□□ -0.11
SYNE3-202ENST00000553340 SFTPCP11686 197 aa14.36□□□□□ -0.11
SYNE3-202ENST00000553340 PRCDQ00LT1 54 aa14.36□□□□□ -0.11
SYNE3-202ENST00000553340 CDC42EP3Q9UKI2 254 aa14.36□□□□□ -0.11
SYNE3-202ENST00000553340 ZNF257Q9Y2Q1 563 aa14.36□□□□□ -0.11
SYNE3-202ENST00000553340 IGKV1OR2-108A0A075B7D4 117 aa14.36□□□□□ -0.11
SYNE3-202ENST00000553340 GATA2P23769 480 aaPredicted RBP14.36□□□□□ -0.11
SYNE3-202ENST00000553340 PRRX1P54821 245 aa14.36□□□□□ -0.11
SYNE3-202ENST00000553340 MOB3BQ86TA1 216 aa14.36□□□□□ -0.11
SYNE3-202ENST00000553340 PNKDQ8N490 385 aa14.36□□□□□ -0.11
SYNE3-202ENST00000553340 ZFP30Q9Y2G7 519 aa14.36□□□□□ -0.11
SYNE3-202ENST00000553340 APCSP02743 223 aa14.35□□□□□ -0.11
SYNE3-202ENST00000553340 TFPI2P48307 235 aa14.35□□□□□ -0.11
SYNE3-202ENST00000553340 MMDQ15546 238 aa14.35□□□□□ -0.11
SYNE3-202ENST00000553340 IGF2BP2-AS1Q96M15 143 aa14.35□□□□□ -0.11
SYNE3-202ENST00000553340 SLC35D1Q9NTN3 355 aa14.35□□□□□ -0.11
SYNE3-202ENST00000553340 KBTBD11-OT1A0A1B0GTJ5 212 aa14.35□□□□□ -0.11
SYNE3-202ENST00000553340 IZUMO1RA6ND01 250 aa14.35□□□□□ -0.11
SYNE3-202ENST00000553340 DPRXA6NFQ7 191 aa14.35□□□□□ -0.11
SYNE3-202ENST00000553340 IGHG3P01860 377 aa14.35□□□□□ -0.11
SYNE3-202ENST00000553340 C3orf79P0CE67 100 aa14.35□□□□□ -0.11
SYNE3-202ENST00000553340 C19orf35Q6ZS72 473 aa14.35□□□□□ -0.11
SYNE3-202ENST00000553340 C9orf106Q8NAJ2 232 aa14.35□□□□□ -0.11
SYNE3-202ENST00000553340 TXN2Q99757 166 aa14.35□□□□□ -0.11
SYNE3-202ENST00000553340 NCOR1P1Q9H4R4 102 aa14.35□□□□□ -0.11
SYNE3-202ENST00000553340 ZNF331Q9NQX6 463 aaPredicted RBP14.35□□□□□ -0.11
SYNE3-202ENST00000553340 HEATR1Q9H583 2144 aaKnown RBP14.34□□□□□ -0.11
SYNE3-202ENST00000553340 C8orf88P0DMB2 117 aa14.34□□□□□ -0.11
SYNE3-202ENST00000553340 IGLC2P0DOY2 106 aa14.34□□□□□ -0.11
SYNE3-202ENST00000553340 IGLC3P0DOY3 106 aa14.34□□□□□ -0.11
SYNE3-202ENST00000553340 ATP5IP56385 69 aaPredicted RBP14.34□□□□□ -0.11
SYNE3-202ENST00000553340 MOGAT3Q86VF5 341 aa14.34□□□□□ -0.11
SYNE3-202ENST00000553340 NIT1Q86X76 327 aa14.34□□□□□ -0.11
SYNE3-202ENST00000553340 BORCS7Q96B45 105 aa14.34□□□□□ -0.11
SYNE3-202ENST00000553340 OR2V2Q96R30 315 aa14.34□□□□□ -0.11
SYNE3-202ENST00000553340 ARRDC1-AS1Q9H2J1 176 aa14.34□□□□□ -0.11
SYNE3-202ENST00000553340 USF1P22415 310 aaPredicted RBP14.34□□□□□ -0.11
SYNE3-202ENST00000553340 CHRNB4P30926 498 aa14.34□□□□□ -0.11
SYNE3-202ENST00000553340 TSKUQ8WUA8 353 aa14.34□□□□□ -0.11
SYNE3-202ENST00000553340 SLC25A33Q9BSK2 321 aa14.34□□□□□ -0.11
SYNE3-202ENST00000553340 COMMD5Q9GZQ3 224 aa14.34□□□□□ -0.11
SYNE3-202ENST00000553340 UPK2O00526 184 aa14.33□□□□□ -0.11
SYNE3-202ENST00000553340 HYPMO75409 117 aa14.33□□□□□ -0.11
SYNE3-202ENST00000553340 Q6ZN92 141 aa14.33□□□□□ -0.11
SYNE3-202ENST00000553340 KLHDC1Q8N7A1 406 aa14.33□□□□□ -0.11
SYNE3-202ENST00000553340 ZNF439Q8NDP4 499 aa14.33□□□□□ -0.11
SYNE3-202ENST00000553340 HNRNPA3P51991 378 aaKnown RBP14.33□□□□□ -0.12
SYNE3-202ENST00000553340 C2orf83Q53S99 150 aa14.33□□□□□ -0.12
SYNE3-202ENST00000553340 FAM19A2Q8N3H0 131 aa14.33□□□□□ -0.12
SYNE3-202ENST00000553340 C11orf42Q8N5U0 333 aa14.33□□□□□ -0.12
SYNE3-202ENST00000553340 CBY1Q9Y3M2 126 aa14.33□□□□□ -0.12
SYNE3-202ENST00000553340 NTF3P20783 257 aa14.32□□□□□ -0.12
SYNE3-202ENST00000553340 DMRTA1Q5VZB9 504 aa14.32□□□□□ -0.12
SYNE3-202ENST00000553340 MRPL32Q9BYC8 188 aaKnown RBP14.32□□□□□ -0.12
SYNE3-202ENST00000553340 MRPL27Q9P0M9 148 aaKnown RBP14.32□□□□□ -0.12
SYNE3-202ENST00000553340 TRIOBPQ9H2D6 2365 aa14.32□□□□□ -0.12
SYNE3-202ENST00000553340 LNP1A1A4G5 178 aa14.32□□□□□ -0.12
SYNE3-202ENST00000553340 SIAH2O43255 324 aa14.32□□□□□ -0.12
SYNE3-202ENST00000553340 SPRNQ5BIV9 151 aa14.32□□□□□ -0.12
SYNE3-202ENST00000553340 OR9G1Q8NH87 305 aa14.32□□□□□ -0.12
SYNE3-202ENST00000553340 PLSCR4Q9NRQ2 329 aa14.32□□□□□ -0.12
SYNE3-202ENST00000553340 TEX50A0A1B0GTY4 177 aa14.31□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 113.6 ms