RNA–Protein interactions for RNA: ENST00000549414.6

CUX1-213, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,452 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-213ENST00000549414 FCER1GP30273 86 aa13.54□□□□□ -0.24
CUX1-213ENST00000549414 FCGR2BP31994 310 aaPredicted RBP13.54□□□□□ -0.24
CUX1-213ENST00000549414 JMJD1CQ15652 2540 aa13.53□□□□□ -0.24
CUX1-213ENST00000549414 LOC105371242A0A075B767 164 aa13.53□□□□□ -0.24
CUX1-213ENST00000549414 GRIFINA4D1Z8 144 aa13.53□□□□□ -0.24
CUX1-213ENST00000549414 M0R2Z0 102 aa13.53□□□□□ -0.24
CUX1-213ENST00000549414 HIST1H1EP10412 219 aaKnown RBP13.53□□□□□ -0.24
CUX1-213ENST00000549414 LINC00518Q8N0U6 118 aa13.53□□□□□ -0.24
CUX1-213ENST00000549414 C11orf42Q8N5U0 333 aa13.53□□□□□ -0.24
CUX1-213ENST00000549414 LCN2P80188 198 aa13.53□□□□□ -0.24
CUX1-213ENST00000549414 ZNF474Q6S9Z5 364 aaPredicted RBP13.53□□□□□ -0.24
CUX1-213ENST00000549414 ASCL4Q6XD76 172 aa13.53□□□□□ -0.24
CUX1-213ENST00000549414 C5orf17Q8NAS9 161 aa13.53□□□□□ -0.24
CUX1-213ENST00000549414 OSR1Q8TAX0 266 aaPredicted RBP13.53□□□□□ -0.24
CUX1-213ENST00000549414 PAM16Q9Y3D7 125 aa13.53□□□□□ -0.24
CUX1-213ENST00000549414 LINC00312Q9Y6C7 94 aa13.53□□□□□ -0.24
CUX1-213ENST00000549414 IGHV3OR16-13A0A075B7E8 117 aa13.53□□□□□ -0.24
CUX1-213ENST00000549414 IGHV3OR16-8A0A075B7F1 116 aa13.53□□□□□ -0.24
CUX1-213ENST00000549414 IGHV3-74A0A0B4J1X5 117 aa13.53□□□□□ -0.24
CUX1-213ENST00000549414 SCO2A0A1W2PP80 73 aa13.53□□□□□ -0.24
CUX1-213ENST00000549414 C1QTNF9BB2RNN3 333 aa13.53□□□□□ -0.24
CUX1-213ENST00000549414 SLC17A3O00476 420 aa13.53□□□□□ -0.24
CUX1-213ENST00000549414 FAM162BQ5T6X4 162 aa13.53□□□□□ -0.24
CUX1-213ENST00000549414 PGPEP1LA6NFU8 196 aa13.53□□□□□ -0.24
CUX1-213ENST00000549414 TFPI2P48307 235 aa13.53□□□□□ -0.24
CUX1-213ENST00000549414 VN1R17PQ8TDU5 208 aa13.53□□□□□ -0.24
CUX1-213ENST00000549414 CCL19Q99731 98 aa13.53□□□□□ -0.24
CUX1-213ENST00000549414 IFI27L2Q9H2X8 130 aa13.53□□□□□ -0.24
CUX1-213ENST00000549414 G0S2P27469 103 aa13.52□□□□□ -0.24
CUX1-213ENST00000549414 TBR1Q16650 682 aa13.52□□□□□ -0.24
CUX1-213ENST00000549414 MIR17HGQ75NE6 70 aa13.52□□□□□ -0.24
CUX1-213ENST00000549414 GLRX5Q86SX6 157 aa13.52□□□□□ -0.25
CUX1-213ENST00000549414 OR51M1Q9H341 326 aa13.52□□□□□ -0.25
CUX1-213ENST00000549414 LINC00473A8K010 186 aa13.52□□□□□ -0.25
CUX1-213ENST00000549414 TM4SF5O14894 197 aa13.52□□□□□ -0.25
CUX1-213ENST00000549414 APCSP02743 223 aa13.52□□□□□ -0.25
CUX1-213ENST00000549414 CENPWQ5EE01 88 aa13.52□□□□□ -0.25
CUX1-213ENST00000549414 C10orf55Q5SWW7 151 aa13.52□□□□□ -0.25
CUX1-213ENST00000549414 UNQ6494/PRO21346Q6UXR6 183 aa13.52□□□□□ -0.25
CUX1-213ENST00000549414 TXNDC17Q9BRA2 123 aa13.52□□□□□ -0.25
CUX1-213ENST00000549414 COL25A1Q9BXS0 654 aaPredicted RBP13.52□□□□□ -0.25
CUX1-213ENST00000549414 UFC1Q9Y3C8 167 aa13.52□□□□□ -0.25
CUX1-213ENST00000549414 IGHG3P01860 377 aa13.51□□□□□ -0.25
CUX1-213ENST00000549414 HNRNPA3P51991 378 aaKnown RBP13.51□□□□□ -0.25
CUX1-213ENST00000549414 UNQ5815/PRO19632Q6UWF5 114 aa13.51□□□□□ -0.25
CUX1-213ENST00000549414 OR4A5Q8NH83 315 aa13.51□□□□□ -0.25
CUX1-213ENST00000549414 TRAV3A0A0B4J244 114 aa13.51□□□□□ -0.25
CUX1-213ENST00000549414 CXorf65A6NEN9 183 aa13.51□□□□□ -0.25
CUX1-213ENST00000549414 DNM1P46Q6ZS02 220 aa13.51□□□□□ -0.25
CUX1-213ENST00000549414 CGB1A6NKQ9 187 aa13.51□□□□□ -0.25
CUX1-213ENST00000549414 CBLN1P23435 193 aa13.51□□□□□ -0.25
CUX1-213ENST00000549414 CYP2G1PQ6ZSU1 146 aa13.51□□□□□ -0.25
CUX1-213ENST00000549414 HSPB7Q9UBY9 170 aa13.51□□□□□ -0.25
CUX1-213ENST00000549414 MYOD1P15172 320 aa13.51□□□□□ -0.25
CUX1-213ENST00000549414 PPOXP50336 477 aa13.51□□□□□ -0.25
CUX1-213ENST00000549414 KLHDC1Q8N7A1 406 aa13.51□□□□□ -0.25
CUX1-213ENST00000549414 RNF24Q9Y225 148 aa13.51□□□□□ -0.25
CUX1-213ENST00000549414 SRSF4Q08170 494 aaKnown RBP13.5□□□□□ -0.25
CUX1-213ENST00000549414 LINC00305Q7Z4B0 112 aa13.5□□□□□ -0.25
CUX1-213ENST00000549414 OR10W1Q8NGF6 305 aa13.5□□□□□ -0.25
CUX1-213ENST00000549414 RNASE6Q93091 150 aaKnown RBP13.5□□□□□ -0.25
CUX1-213ENST00000549414 SFRP2Q96HF1 295 aa13.5□□□□□ -0.25
CUX1-213ENST00000549414 IGHV3-23P01764 117 aa13.5□□□□□ -0.25
CUX1-213ENST00000549414 CD5P06127 495 aa13.5□□□□□ -0.25
CUX1-213ENST00000549414 PRB4P10163 310 aaPredicted RBP13.5□□□□□ -0.25
CUX1-213ENST00000549414 TMEM183BQ1AE95 376 aa13.5□□□□□ -0.25
CUX1-213ENST00000549414 CORTO00230 105 aa13.5□□□□□ -0.25
CUX1-213ENST00000549414 CCKARP32238 428 aa13.5□□□□□ -0.25
CUX1-213ENST00000549414 TIMP3P35625 211 aa13.5□□□□□ -0.25
CUX1-213ENST00000549414 OR1P1Q8NH06 330 aa13.5□□□□□ -0.25
CUX1-213ENST00000549414 HSPB9Q9BQS6 159 aa13.5□□□□□ -0.25
CUX1-213ENST00000549414 PIMREGQ9BSJ6 248 aa13.5□□□□□ -0.25
CUX1-213ENST00000549414 OR5AL1P0C617 328 aa13.49□□□□□ -0.25
CUX1-213ENST00000549414 GRAMD2BQ96HH9 432 aa13.49□□□□□ -0.25
CUX1-213ENST00000549414 DMRTA2Q96SC8 542 aa13.49□□□□□ -0.25
CUX1-213ENST00000549414 IGKV1D-17A0A075B6S4 117 aa13.49□□□□□ -0.25
CUX1-213ENST00000549414 BPIFA4PQ86YQ2 179 aa13.49□□□□□ -0.25
CUX1-213ENST00000549414 GBGT1Q8N5D6 347 aa13.49□□□□□ -0.25
CUX1-213ENST00000549414 ZNF436-AS1Q8NC38 126 aaPredicted RBP13.49□□□□□ -0.25
CUX1-213ENST00000549414 MRPL18Q9H0U6 180 aaKnown RBP13.49□□□□□ -0.25
CUX1-213ENST00000549414 SDF2L1Q9HCN8 221 aa13.49□□□□□ -0.25
CUX1-213ENST00000549414 DKK1O94907 266 aa13.49□□□□□ -0.25
CUX1-213ENST00000549414 TGFAP01135 160 aa13.49□□□□□ -0.25
CUX1-213ENST00000549414 TMEM30BQ3MIR4 351 aa13.49□□□□□ -0.25
CUX1-213ENST00000549414 PLA2G2CQ5R387 149 aa13.49□□□□□ -0.25
CUX1-213ENST00000549414 MBNL2Q5VZF2 373 aaKnown RBP13.49□□□□□ -0.25
CUX1-213ENST00000549414 KIAA1549LQ6ZVL6 1849 aa13.49□□□□□ -0.25
CUX1-213ENST00000549414 SETD2Q9BYW2 2564 aaPredicted RBP13.49□□□□□ -0.25
CUX1-213ENST00000549414 FASNP49327 2511 aaKnown RBP13.49□□□□□ -0.25
CUX1-213ENST00000549414 C15orf61A6NNL5 157 aa13.49□□□□□ -0.25
CUX1-213ENST00000549414 IGKV3-15P01624 115 aa13.49□□□□□ -0.25
CUX1-213ENST00000549414 CD81P60033 236 aa13.49□□□□□ -0.25
CUX1-213ENST00000549414 TBX15Q96SF7 602 aa13.49□□□□□ -0.25
CUX1-213ENST00000549414 IL4P05112 153 aa13.48□□□□□ -0.25
CUX1-213ENST00000549414 FAM106CPP0CH98 169 aa13.48□□□□□ -0.25
CUX1-213ENST00000549414 NHLH1Q02575 133 aa13.48□□□□□ -0.25
CUX1-213ENST00000549414 MEF2CQ06413 473 aaPredicted RBP13.48□□□□□ -0.25
CUX1-213ENST00000549414 Q6ZS92 163 aa13.48□□□□□ -0.25
CUX1-213ENST00000549414 RPP25LQ8N5L8 163 aaKnown RBP13.48□□□□□ -0.25
CUX1-213ENST00000549414 ZNF462Q96JM2 2506 aa13.48□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 198.8 ms