RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 MOB4Q9Y3A3 225 aa16.7■□□□□ 0.26
VPS28-208ENST00000527797 PRSS46E5RG02 174 aa16.69■□□□□ 0.26
VPS28-208ENST00000527797 FBXO24O75426 580 aa16.69■□□□□ 0.26
VPS28-208ENST00000527797 HLA-DRB1P01911 266 aa16.69■□□□□ 0.26
VPS28-208ENST00000527797 AREGP15514 252 aa16.69■□□□□ 0.26
VPS28-208ENST00000527797 RAB14P61106 215 aa16.69■□□□□ 0.26
VPS28-208ENST00000527797 TMEM219Q86XT9 240 aa16.69■□□□□ 0.26
VPS28-208ENST00000527797 ABHD5Q8WTS1 349 aa16.69■□□□□ 0.26
VPS28-208ENST00000527797 SSMEM1Q8WWF3 244 aa16.69■□□□□ 0.26
VPS28-208ENST00000527797 P2RX4Q99571 388 aa16.69■□□□□ 0.26
VPS28-208ENST00000527797 PARD6GQ9BYG4 376 aaPredicted RBP16.69■□□□□ 0.26
VPS28-208ENST00000527797 MDFIC2A0A1B0GVS7 189 aa16.68■□□□□ 0.26
VPS28-208ENST00000527797 A6NDX4 124 aa16.68■□□□□ 0.26
VPS28-208ENST00000527797 CD5LO43866 347 aa16.68■□□□□ 0.26
VPS28-208ENST00000527797 REG1AP05451 166 aa16.68■□□□□ 0.26
VPS28-208ENST00000527797 DLK1P80370 383 aa16.68■□□□□ 0.26
VPS28-208ENST00000527797 VWC2Q2TAL6 325 aa16.68■□□□□ 0.26
VPS28-208ENST00000527797 C22orf15Q8WYQ4 148 aa16.68■□□□□ 0.26
VPS28-208ENST00000527797 ARPC1AQ92747 370 aa16.68■□□□□ 0.26
VPS28-208ENST00000527797 PITPNC1Q9UKF7 332 aa16.68■□□□□ 0.26
VPS28-208ENST00000527797 HECTD1Q9ULT8 2610 aa16.68■□□□□ 0.26
VPS28-208ENST00000527797 UBE2L5PA0A1B0GUS4 154 aa16.67■□□□□ 0.26
VPS28-208ENST00000527797 FGF16O43320 207 aa16.67■□□□□ 0.26
VPS28-208ENST00000527797 SEC11BP0C7V7 166 aa16.67■□□□□ 0.26
VPS28-208ENST00000527797 APELAP0DMC3 54 aa16.67■□□□□ 0.26
VPS28-208ENST00000527797 LY6EQ16553 131 aa16.67■□□□□ 0.26
VPS28-208ENST00000527797 C5orf56Q8N8D9 126 aa16.67■□□□□ 0.26
VPS28-208ENST00000527797 ZNF114Q8NC26 417 aa16.67■□□□□ 0.26
VPS28-208ENST00000527797 GNPNAT1Q96EK6 184 aaPredicted RBP16.67■□□□□ 0.26
VPS28-208ENST00000527797 TNCP24821 2201 aa16.67■□□□□ 0.26
VPS28-208ENST00000527797 IGHV7-81A0A0B4J1V7 117 aa16.67■□□□□ 0.26
VPS28-208ENST00000527797 SPP1P10451 314 aa16.67■□□□□ 0.26
VPS28-208ENST00000527797 ATP6V0CP27449 155 aa16.67■□□□□ 0.26
VPS28-208ENST00000527797 FAM74A1Q5RGS3 127 aa16.67■□□□□ 0.26
VPS28-208ENST00000527797 WDR61Q9GZS3 305 aaKnown RBP16.67■□□□□ 0.26
VPS28-208ENST00000527797 SLC25A32Q9H2D1 315 aa16.67■□□□□ 0.26
VPS28-208ENST00000527797 NBPF19A0A087WUL8 3843 aa16.66■□□□□ 0.26
VPS28-208ENST00000527797 RNASEH2CQ8TDP1 164 aaKnown RBP16.66■□□□□ 0.26
VPS28-208ENST00000527797 FAM103A1Q9BTL3 118 aaKnown RBP16.66■□□□□ 0.26
VPS28-208ENST00000527797 VPS13CQ709C8 3753 aa16.65■□□□□ 0.26
VPS28-208ENST00000527797 SMCO3A2RU48 225 aa16.65■□□□□ 0.26
VPS28-208ENST00000527797 KRTAP1-1Q07627 177 aa16.65■□□□□ 0.26
VPS28-208ENST00000527797 OR1P1Q8NH06 330 aa16.65■□□□□ 0.26
VPS28-208ENST00000527797 SH3BGRL3Q9H299 93 aa16.65■□□□□ 0.26
VPS28-208ENST00000527797 RUNX1Q01196 453 aa16.64■□□□□ 0.25
VPS28-208ENST00000527797 CLLU1Q5K131 121 aa16.64■□□□□ 0.25
VPS28-208ENST00000527797 SPNS3Q6ZMD2 512 aa16.64■□□□□ 0.25
VPS28-208ENST00000527797 C16orf82Q7Z2V1 217 aa16.64■□□□□ 0.25
VPS28-208ENST00000527797 RNF141Q8WVD5 230 aa16.64■□□□□ 0.25
VPS28-208ENST00000527797 TAF15Q92804 592 aaKnown RBP eCLIP16.64■□□□□ 0.25
VPS28-208ENST00000527797 F11RQ9Y624 299 aaKnown RBP16.64■□□□□ 0.25
VPS28-208ENST00000527797 MAP1AP78559 2803 aaPredicted RBP16.64■□□□□ 0.25
VPS28-208ENST00000527797 M0QZK8 103 aa16.63■□□□□ 0.25
VPS28-208ENST00000527797 FGF7P21781 194 aa16.63■□□□□ 0.25
VPS28-208ENST00000527797 IER3P46695 156 aa16.63■□□□□ 0.25
VPS28-208ENST00000527797 NDPQ00604 133 aa16.63■□□□□ 0.25
VPS28-208ENST00000527797 CD69Q07108 199 aa16.63■□□□□ 0.25
VPS28-208ENST00000527797 PVRIGQ6DKI7 326 aa16.63■□□□□ 0.25
VPS28-208ENST00000527797 OR2G3Q8NGZ4 309 aa16.63■□□□□ 0.25
VPS28-208ENST00000527797 LRRC20Q8TCA0 184 aa16.63■□□□□ 0.25
VPS28-208ENST00000527797 HSPB9Q9BQS6 159 aa16.63■□□□□ 0.25
VPS28-208ENST00000527797 YAE1D1Q9NRH1 226 aa16.63■□□□□ 0.25
VPS28-208ENST00000527797 CREBBPQ92793 2442 aa16.63■□□□□ 0.25
VPS28-208ENST00000527797 FNDC10F2Z333 226 aa16.63■□□□□ 0.25
VPS28-208ENST00000527797 GPX4P36969 197 aaPredicted RBP16.63■□□□□ 0.25
VPS28-208ENST00000527797 ARSJQ5FYB0 599 aaPredicted RBP16.63■□□□□ 0.25
VPS28-208ENST00000527797 Q6YL49 198 aa16.63■□□□□ 0.25
VPS28-208ENST00000527797 OR5R1Q8NH85 324 aa16.63■□□□□ 0.25
VPS28-208ENST00000527797 PCNPQ8WW12 178 aaKnown RBP16.63■□□□□ 0.25
VPS28-208ENST00000527797 CACNG8Q8WXS5 425 aa16.63■□□□□ 0.25
VPS28-208ENST00000527797 NPVFQ9HCQ7 196 aa16.63■□□□□ 0.25
VPS28-208ENST00000527797 WDR83OSQ9Y284 106 aa16.63■□□□□ 0.25
VPS28-208ENST00000527797 RPS10-NUDT3A0A1W2PQS6 291 aa16.62■□□□□ 0.25
VPS28-208ENST00000527797 BTBD17A6NE02 478 aa16.62■□□□□ 0.25
VPS28-208ENST00000527797 CORTO00230 105 aa16.62■□□□□ 0.25
VPS28-208ENST00000527797 IGHV4-59P01825 116 aa16.62■□□□□ 0.25
VPS28-208ENST00000527797 CTRB1P17538 263 aa16.62■□□□□ 0.25
VPS28-208ENST00000527797 MDKP21741 143 aaPredicted RBP16.62■□□□□ 0.25
VPS28-208ENST00000527797 SULT1A2P50226 295 aa16.62■□□□□ 0.25
VPS28-208ENST00000527797 CTRB2Q6GPI1 263 aa16.62■□□□□ 0.25
VPS28-208ENST00000527797 BTNL8Q6UX41 500 aa16.62■□□□□ 0.25
VPS28-208ENST00000527797 OR1L6Q8NGR2 347 aa16.62■□□□□ 0.25
VPS28-208ENST00000527797 PSMG3Q9BT73 122 aaPredicted RBP16.62■□□□□ 0.25
VPS28-208ENST00000527797 RSG1Q9BU20 258 aa16.62■□□□□ 0.25
VPS28-208ENST00000527797 WNT10AQ9GZT5 417 aa16.62■□□□□ 0.25
VPS28-208ENST00000527797 CCDC168Q8NDH2 2452 aa16.62■□□□□ 0.25
VPS28-208ENST00000527797 ITPR2Q14571 2701 aa16.62■□□□□ 0.25
VPS28-208ENST00000527797 AMY1AP04745 511 aa16.61■□□□□ 0.25
VPS28-208ENST00000527797 FAM157CP0CG43 387 aa16.61■□□□□ 0.25
VPS28-208ENST00000527797 EGR2P11161 476 aaPredicted RBP16.61■□□□□ 0.25
VPS28-208ENST00000527797 DEFA4P12838 97 aa16.61■□□□□ 0.25
VPS28-208ENST00000527797 OPRK1P41145 380 aa16.61■□□□□ 0.25
VPS28-208ENST00000527797 MFAP2P55001 183 aa16.61■□□□□ 0.25
VPS28-208ENST00000527797 NDUFA5Q16718 116 aa16.61■□□□□ 0.25
VPS28-208ENST00000527797 TREML4Q6UXN2 200 aa16.61■□□□□ 0.25
VPS28-208ENST00000527797 TTC9CQ8N5M4 171 aa16.61■□□□□ 0.25
VPS28-208ENST00000527797 MISP3Q96FF7 219 aa16.61■□□□□ 0.25
VPS28-208ENST00000527797 PRDM13Q9H4Q3 707 aa16.61■□□□□ 0.25
VPS28-208ENST00000527797 PARP11Q9NR21 331 aa16.61■□□□□ 0.25
VPS28-208ENST00000527797 PLA2G2EQ9NZK7 142 aa16.61■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 94.9 ms