RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 MFAP2P55001 183 aa9□□□□□ -0.97
MSH5-SAPCD1-207ENST00000493662 UBE2G1P62253 170 aa9□□□□□ -0.97
MSH5-SAPCD1-207ENST00000493662 ACTL10Q5JWF8 245 aa9□□□□□ -0.97
MSH5-SAPCD1-207ENST00000493662 TMEM211Q6ICI0 200 aa9□□□□□ -0.97
MSH5-SAPCD1-207ENST00000493662 C1orf174Q8IYL3 243 aa9□□□□□ -0.97
MSH5-SAPCD1-207ENST00000493662 STPG4Q8N801 248 aa9□□□□□ -0.97
MSH5-SAPCD1-207ENST00000493662 TMEM45BQ96B21 275 aa9□□□□□ -0.97
MSH5-SAPCD1-207ENST00000493662 GPR146Q96CH1 333 aa9□□□□□ -0.97
MSH5-SAPCD1-207ENST00000493662 C1orf147Q96MC9 270 aaPredicted RBP9□□□□□ -0.97
MSH5-SAPCD1-207ENST00000493662 ZNF835Q9Y2P0 537 aa9□□□□□ -0.97
MSH5-SAPCD1-207ENST00000493662 EML5Q05BV3 1969 aa9□□□□□ -0.97
MSH5-SAPCD1-207ENST00000493662 WNK1Q9H4A3 2382 aa9□□□□□ -0.97
MSH5-SAPCD1-207ENST00000493662 IGHV2OR16-5A0A0B4J2B6 119 aa9□□□□□ -0.97
MSH5-SAPCD1-207ENST00000493662 TEX50A0A1B0GTY4 177 aa9□□□□□ -0.97
MSH5-SAPCD1-207ENST00000493662 C1QTNF9BB2RNN3 333 aa9□□□□□ -0.97
MSH5-SAPCD1-207ENST00000493662 C1QTNF9P0C862 333 aa9□□□□□ -0.97
MSH5-SAPCD1-207ENST00000493662 F2RP25116 425 aa9□□□□□ -0.97
MSH5-SAPCD1-207ENST00000493662 QRFPP83859 136 aa9□□□□□ -0.97
MSH5-SAPCD1-207ENST00000493662 RELBQ01201 579 aa9□□□□□ -0.97
MSH5-SAPCD1-207ENST00000493662 MMD2Q8IY49 270 aa9□□□□□ -0.97
MSH5-SAPCD1-207ENST00000493662 FAM216BQ8N7L0 139 aa9□□□□□ -0.97
MSH5-SAPCD1-207ENST00000493662 VSIRQ9H7M9 311 aa9□□□□□ -0.97
MSH5-SAPCD1-207ENST00000493662 PLA2G2EQ9NZK7 142 aa9□□□□□ -0.97
MSH5-SAPCD1-207ENST00000493662 MRPS18CQ9Y3D5 142 aaKnown RBP9□□□□□ -0.97
MSH5-SAPCD1-207ENST00000493662 IGHV3-21A0A0B4J1V1 117 aa9□□□□□ -0.97
MSH5-SAPCD1-207ENST00000493662 IFNL4K9M1U5 179 aa9□□□□□ -0.97
MSH5-SAPCD1-207ENST00000493662 CCL25O15444 150 aa9□□□□□ -0.97
MSH5-SAPCD1-207ENST00000493662 PSPNO60542 156 aa9□□□□□ -0.97
MSH5-SAPCD1-207ENST00000493662 ARHGAP21Q5T5U3 1957 aa9□□□□□ -0.97
MSH5-SAPCD1-207ENST00000493662 Q6ZVH6 145 aa9□□□□□ -0.97
MSH5-SAPCD1-207ENST00000493662 SSX8Q7RTT4 187 aa9□□□□□ -0.97
MSH5-SAPCD1-207ENST00000493662 LYPD6BQ8NI32 183 aa9□□□□□ -0.97
MSH5-SAPCD1-207ENST00000493662 TMEM171Q8WVE6 324 aa9□□□□□ -0.97
MSH5-SAPCD1-207ENST00000493662 MSI2Q96DH6 328 aaKnown RBP9□□□□□ -0.97
MSH5-SAPCD1-207ENST00000493662 LINC00470Q9BZP3 86 aa9□□□□□ -0.97
MSH5-SAPCD1-207ENST00000493662 HELTA6NFD8 242 aa8.99□□□□□ -0.97
MSH5-SAPCD1-207ENST00000493662 FAM157AC9JC47 383 aa8.99□□□□□ -0.97
MSH5-SAPCD1-207ENST00000493662 ETV2O00321 342 aaPredicted RBP8.99□□□□□ -0.97
MSH5-SAPCD1-207ENST00000493662 MZT1Q08AG7 82 aa8.99□□□□□ -0.97
MSH5-SAPCD1-207ENST00000493662 TRAT1Q6PIZ9 186 aa8.99□□□□□ -0.97
MSH5-SAPCD1-207ENST00000493662 OR8B3Q8NGG8 313 aa8.99□□□□□ -0.97
MSH5-SAPCD1-207ENST00000493662 S1PR3Q99500 378 aa8.99□□□□□ -0.97
MSH5-SAPCD1-207ENST00000493662 LIME1Q9H400 295 aa8.99□□□□□ -0.97
MSH5-SAPCD1-207ENST00000493662 TRGV10A0A0A0MS01 117 aa8.99□□□□□ -0.97
MSH5-SAPCD1-207ENST00000493662 TRAV24A0A0B4J272 114 aa8.99□□□□□ -0.97
MSH5-SAPCD1-207ENST00000493662 PGPEP1LA6NFU8 196 aa8.99□□□□□ -0.97
MSH5-SAPCD1-207ENST00000493662 OR10J4P0C629 311 aa8.99□□□□□ -0.97
MSH5-SAPCD1-207ENST00000493662 CCL1P22362 96 aa8.99□□□□□ -0.97
MSH5-SAPCD1-207ENST00000493662 TCTAP57738 103 aa8.99□□□□□ -0.97
MSH5-SAPCD1-207ENST00000493662 SMAGPQ0VAQ4 97 aa8.99□□□□□ -0.97
MSH5-SAPCD1-207ENST00000493662 MAP1LC3CQ9BXW4 147 aa8.99□□□□□ -0.97
MSH5-SAPCD1-207ENST00000493662 TM4SF5O14894 197 aa8.99□□□□□ -0.97
MSH5-SAPCD1-207ENST00000493662 HLA-DQA1P01909 254 aa8.99□□□□□ -0.97
MSH5-SAPCD1-207ENST00000493662 OR5AL1P0C617 328 aa8.99□□□□□ -0.97
MSH5-SAPCD1-207ENST00000493662 DLX1P56177 255 aa8.99□□□□□ -0.97
MSH5-SAPCD1-207ENST00000493662 TMEM56Q96MV1 263 aa8.99□□□□□ -0.97
MSH5-SAPCD1-207ENST00000493662 IGKV3D-15A0A087WSY6 115 aa8.98□□□□□ -0.97
MSH5-SAPCD1-207ENST00000493662 TRAV38-1A0A0B4J264 116 aa8.98□□□□□ -0.97
MSH5-SAPCD1-207ENST00000493662 IL6RP08887 468 aaPredicted RBP8.98□□□□□ -0.97
MSH5-SAPCD1-207ENST00000493662 CDKN1AP38936 164 aa8.98□□□□□ -0.97
MSH5-SAPCD1-207ENST00000493662 SSMEM1Q8WWF3 244 aa8.98□□□□□ -0.97
MSH5-SAPCD1-207ENST00000493662 DERL1Q9BUN8 251 aa8.98□□□□□ -0.97
MSH5-SAPCD1-207ENST00000493662 SLC45A2Q9UMX9 530 aa8.98□□□□□ -0.97
MSH5-SAPCD1-207ENST00000493662 NAV3Q8IVL0 2385 aa8.98□□□□□ -0.97
MSH5-SAPCD1-207ENST00000493662 KIR2DL5BA0A0G2JN68 375 aa8.98□□□□□ -0.97
MSH5-SAPCD1-207ENST00000493662 KIR2DL5BA0A0G2JPC4 375 aa8.98□□□□□ -0.97
MSH5-SAPCD1-207ENST00000493662 TMEM238C9JI98 176 aa8.98□□□□□ -0.97
MSH5-SAPCD1-207ENST00000493662 FXYD3Q14802 87 aa8.98□□□□□ -0.97
MSH5-SAPCD1-207ENST00000493662 RPL39P5Q59GN2 51 aa8.98□□□□□ -0.97
MSH5-SAPCD1-207ENST00000493662 Q8IYB0 196 aa8.98□□□□□ -0.97
MSH5-SAPCD1-207ENST00000493662 KIR2DL5AQ8N109 375 aa8.98□□□□□ -0.97
MSH5-SAPCD1-207ENST00000493662 OR13A1Q8NGR1 328 aa8.98□□□□□ -0.97
MSH5-SAPCD1-207ENST00000493662 NEUROG1Q92886 237 aa8.98□□□□□ -0.97
MSH5-SAPCD1-207ENST00000493662 OR8B2Q96RD0 313 aa8.98□□□□□ -0.97
MSH5-SAPCD1-207ENST00000493662 PKD1L2Q7Z442 2459 aa8.98□□□□□ -0.97
MSH5-SAPCD1-207ENST00000493662 IGHV1-18A0A0C4DH31 117 aa8.98□□□□□ -0.97
MSH5-SAPCD1-207ENST00000493662 PGLYRP1O75594 196 aaPredicted RBP8.98□□□□□ -0.97
MSH5-SAPCD1-207ENST00000493662 PRB4P10163 310 aaPredicted RBP8.98□□□□□ -0.97
MSH5-SAPCD1-207ENST00000493662 CTSSP25774 331 aa8.98□□□□□ -0.97
MSH5-SAPCD1-207ENST00000493662 TAS2R45P59539 299 aa8.98□□□□□ -0.97
MSH5-SAPCD1-207ENST00000493662 RHOBP62745 196 aa8.98□□□□□ -0.97
MSH5-SAPCD1-207ENST00000493662 BSPH1Q075Z2 132 aa8.98□□□□□ -0.97
MSH5-SAPCD1-207ENST00000493662 YTHDF2Q9Y5A9 579 aaKnown RBP8.98□□□□□ -0.97
MSH5-SAPCD1-207ENST00000493662 GAGE12BA1L429 117 aa8.97□□□□□ -0.97
MSH5-SAPCD1-207ENST00000493662 C12orf77C9JDV5 145 aa8.97□□□□□ -0.97
MSH5-SAPCD1-207ENST00000493662 CA2P00918 260 aa8.97□□□□□ -0.97
MSH5-SAPCD1-207ENST00000493662 HTR1DP28221 377 aa8.97□□□□□ -0.97
MSH5-SAPCD1-207ENST00000493662 TSPOP30536 169 aa8.97□□□□□ -0.97
MSH5-SAPCD1-207ENST00000493662 C18orf12Q96KH6 178 aa8.97□□□□□ -0.97
MSH5-SAPCD1-207ENST00000493662 FBLN5Q9UBX5 448 aa8.97□□□□□ -0.97
MSH5-SAPCD1-207ENST00000493662 A0A1W2PN81 502 aa8.97□□□□□ -0.97
MSH5-SAPCD1-207ENST00000493662 ODAMA1E959 279 aa8.97□□□□□ -0.97
MSH5-SAPCD1-207ENST00000493662 DLL1O00548 723 aa8.97□□□□□ -0.97
MSH5-SAPCD1-207ENST00000493662 SNAI2O43623 268 aa8.97□□□□□ -0.97
MSH5-SAPCD1-207ENST00000493662 FABP2P12104 132 aa8.97□□□□□ -0.97
MSH5-SAPCD1-207ENST00000493662 GZMHP20718 246 aa8.97□□□□□ -0.97
MSH5-SAPCD1-207ENST00000493662 ZNF324BQ6AW86 544 aaPredicted RBP8.97□□□□□ -0.97
MSH5-SAPCD1-207ENST00000493662 ZNF474Q6S9Z5 364 aaPredicted RBP8.97□□□□□ -0.97
MSH5-SAPCD1-207ENST00000493662 FA2HQ7L5A8 372 aa8.97□□□□□ -0.97
MSH5-SAPCD1-207ENST00000493662 TRAV1-1A0A0B4J248 108 aa8.97□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms