RNA–Protein interactions for RNA: ENST00000485412.1

SQSTM1-208, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 656 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-208ENST00000485412 COMMD9Q9P000 198 aa10.17□□□□□ -0.78
SQSTM1-208ENST00000485412 THYN1Q9P016 225 aa10.17□□□□□ -0.78
SQSTM1-208ENST00000485412 DYNC1H1Q14204 4646 aaKnown RBP10.17□□□□□ -0.78
SQSTM1-208ENST00000485412 PKHD1P08F94 4074 aa10.17□□□□□ -0.78
SQSTM1-208ENST00000485412 IGHV3OR16-13A0A075B7E8 117 aa10.16□□□□□ -0.78
SQSTM1-208ENST00000485412 IGHV3-74A0A0B4J1X5 117 aa10.16□□□□□ -0.78
SQSTM1-208ENST00000485412 LOC100506127A0A0U1RQW1 187 aa10.16□□□□□ -0.78
SQSTM1-208ENST00000485412 NDUFA4O00483 81 aa10.16□□□□□ -0.78
SQSTM1-208ENST00000485412 PGLYRP1O75594 196 aaPredicted RBP10.16□□□□□ -0.78
SQSTM1-208ENST00000485412 KRASP01116 189 aa10.16□□□□□ -0.78
SQSTM1-208ENST00000485412 IGHV3-48P01763 117 aa10.16□□□□□ -0.78
SQSTM1-208ENST00000485412 CTSGP08311 255 aa10.16□□□□□ -0.78
SQSTM1-208ENST00000485412 LPAR6P43657 344 aa10.16□□□□□ -0.78
SQSTM1-208ENST00000485412 TFPI2P48307 235 aa10.16□□□□□ -0.78
SQSTM1-208ENST00000485412 PRR20EP86478 221 aa10.16□□□□□ -0.78
SQSTM1-208ENST00000485412 PRR20CP86479 221 aa10.16□□□□□ -0.78
SQSTM1-208ENST00000485412 PRR20DP86480 221 aa10.16□□□□□ -0.78
SQSTM1-208ENST00000485412 PRR20BP86481 221 aa10.16□□□□□ -0.78
SQSTM1-208ENST00000485412 PRR20AP86496 221 aa10.16□□□□□ -0.78
SQSTM1-208ENST00000485412 OR1L8Q8NGR8 309 aa10.16□□□□□ -0.78
SQSTM1-208ENST00000485412 C11orf45Q8TAV5 145 aa10.16□□□□□ -0.78
SQSTM1-208ENST00000485412 CD300LFQ8TDQ1 290 aa10.16□□□□□ -0.78
SQSTM1-208ENST00000485412 AIFM2Q9BRQ8 373 aa10.16□□□□□ -0.78
SQSTM1-208ENST00000485412 YTHDF1Q9BYJ9 559 aaKnown RBP10.16□□□□□ -0.78
SQSTM1-208ENST00000485412 C6orf62Q9GZU0 229 aaPredicted RBP10.16□□□□□ -0.78
SQSTM1-208ENST00000485412 EHFQ9NZC4 300 aa10.16□□□□□ -0.78
SQSTM1-208ENST00000485412 ETV7Q9Y603 341 aa10.16□□□□□ -0.78
SQSTM1-208ENST00000485412 OR4C46A6NHA9 309 aa10.15□□□□□ -0.78
SQSTM1-208ENST00000485412 F2RP25116 425 aa10.15□□□□□ -0.78
SQSTM1-208ENST00000485412 HERV-K104P61576 105 aa10.15□□□□□ -0.78
SQSTM1-208ENST00000485412 Q56UQ5 140 aa10.15□□□□□ -0.78
SQSTM1-208ENST00000485412 C2CD4CQ8TF44 421 aa10.15□□□□□ -0.78
SQSTM1-208ENST00000485412 LSM10Q969L4 123 aaKnown RBP10.15□□□□□ -0.78
SQSTM1-208ENST00000485412 RARRES2Q99969 163 aa10.15□□□□□ -0.78
SQSTM1-208ENST00000485412 BATF3Q9NR55 127 aa10.15□□□□□ -0.78
SQSTM1-208ENST00000485412 SMPXQ9UHP9 88 aa10.15□□□□□ -0.78
SQSTM1-208ENST00000485412 OR51B2Q9Y5P1 312 aa10.15□□□□□ -0.78
SQSTM1-208ENST00000485412 K7EMT4 169 aa10.14□□□□□ -0.79
SQSTM1-208ENST00000485412 CHEK1O14757 476 aa10.14□□□□□ -0.79
SQSTM1-208ENST00000485412 DEFB4AO15263 64 aa10.14□□□□□ -0.79
SQSTM1-208ENST00000485412 MRPS14O60783 128 aaKnown RBP10.14□□□□□ -0.79
SQSTM1-208ENST00000485412 PMP2P02689 132 aa10.14□□□□□ -0.79
SQSTM1-208ENST00000485412 FGF2P09038 288 aa10.14□□□□□ -0.79
SQSTM1-208ENST00000485412 ERVK-16P61578 105 aa10.14□□□□□ -0.79
SQSTM1-208ENST00000485412 SPSB3Q6PJ21 355 aa10.14□□□□□ -0.79
SQSTM1-208ENST00000485412 GBGT1Q8N5D6 347 aa10.14□□□□□ -0.79
SQSTM1-208ENST00000485412 MOB3AQ96BX8 217 aa10.14□□□□□ -0.79
SQSTM1-208ENST00000485412 ZNF2Q9BSG1 426 aaPredicted RBP10.14□□□□□ -0.79
SQSTM1-208ENST00000485412 RHPN1-AS1Q9BWJ2 59 aa10.14□□□□□ -0.79
SQSTM1-208ENST00000485412 ANAPC10Q9UM13 185 aa10.14□□□□□ -0.79
SQSTM1-208ENST00000485412 A0A0A6YYH2 397 aa10.13□□□□□ -0.79
SQSTM1-208ENST00000485412 IGHV7-4-1A0A0J9YVY3 117 aa10.13□□□□□ -0.79
SQSTM1-208ENST00000485412 A6NJ64 397 aa10.13□□□□□ -0.79
SQSTM1-208ENST00000485412 C15orf62A8K5M9 175 aa10.13□□□□□ -0.79
SQSTM1-208ENST00000485412 MPTX1A8MV57 137 aa10.13□□□□□ -0.79
SQSTM1-208ENST00000485412 TNFAIP8O95379 198 aa10.13□□□□□ -0.79
SQSTM1-208ENST00000485412 SCAND1P57086 179 aa10.13□□□□□ -0.79
SQSTM1-208ENST00000485412 TCTAP57738 103 aa10.13□□□□□ -0.79
SQSTM1-208ENST00000485412 FAM90A2PQ658T7 463 aa10.13□□□□□ -0.79
SQSTM1-208ENST00000485412 THOC7Q6I9Y2 204 aaKnown RBP10.13□□□□□ -0.79
SQSTM1-208ENST00000485412 LILRB2Q8N423 598 aa10.13□□□□□ -0.79
SQSTM1-208ENST00000485412 FCGR1BQ92637 280 aa10.13□□□□□ -0.79
SQSTM1-208ENST00000485412 DGCR14Q96DF8 476 aaKnown RBP10.13□□□□□ -0.79
SQSTM1-208ENST00000485412 CSTL1Q9H114 145 aa10.13□□□□□ -0.79
SQSTM1-208ENST00000485412 IFT46Q9NQC8 304 aa10.13□□□□□ -0.79
SQSTM1-208ENST00000485412 I3L2K1 104 aa10.12□□□□□ -0.79
SQSTM1-208ENST00000485412 IGKV1-39P01597 117 aa10.12□□□□□ -0.79
SQSTM1-208ENST00000485412 APOHP02749 345 aaPredicted RBP10.12□□□□□ -0.79
SQSTM1-208ENST00000485412 IGKV1D-39P04432 117 aa10.12□□□□□ -0.79
SQSTM1-208ENST00000485412 NEDD8Q15843 81 aa10.12□□□□□ -0.79
SQSTM1-208ENST00000485412 PHLDA2Q53GA4 152 aa10.12□□□□□ -0.79
SQSTM1-208ENST00000485412 DHRS11Q6UWP2 260 aa10.12□□□□□ -0.79
SQSTM1-208ENST00000485412 HSD17B13Q7Z5P4 300 aaPredicted RBP10.12□□□□□ -0.79
SQSTM1-208ENST00000485412 FAM24BQ8N5W8 94 aa10.12□□□□□ -0.79
SQSTM1-208ENST00000485412 TMEM116Q8NCL8 245 aa10.12□□□□□ -0.79
SQSTM1-208ENST00000485412 OR11H2Q8NH07 326 aa10.12□□□□□ -0.79
SQSTM1-208ENST00000485412 SLC25A46Q96AG3 418 aa10.12□□□□□ -0.79
SQSTM1-208ENST00000485412 MISP3Q96FF7 219 aa10.12□□□□□ -0.79
SQSTM1-208ENST00000485412 C11orf68Q9H3H3 251 aaKnown RBP10.12□□□□□ -0.79
SQSTM1-208ENST00000485412 DIABLOQ9NR28 239 aa10.12□□□□□ -0.79
SQSTM1-208ENST00000485412 TMEM14BQ9NUH8 114 aa10.12□□□□□ -0.79
SQSTM1-208ENST00000485412 DNAH11Q96DT5 4516 aa10.12□□□□□ -0.79
SQSTM1-208ENST00000485412 MUC4Q99102 2169 aa10.11□□□□□ -0.79
SQSTM1-208ENST00000485412 IGHV3-66A0A0C4DH42 116 aa10.11□□□□□ -0.79
SQSTM1-208ENST00000485412 A6NHS1 94 aa10.11□□□□□ -0.79
SQSTM1-208ENST00000485412 C15orf61A6NNL5 157 aa10.11□□□□□ -0.79
SQSTM1-208ENST00000485412 IGLL5B9A064 214 aa10.11□□□□□ -0.79
SQSTM1-208ENST00000485412 NUPL2O15504 423 aaKnown RBP10.11□□□□□ -0.79
SQSTM1-208ENST00000485412 CYB5BO43169 146 aa10.11□□□□□ -0.79
SQSTM1-208ENST00000485412 XRCC3O43542 346 aa10.11□□□□□ -0.79
SQSTM1-208ENST00000485412 YIF1AO95070 293 aa10.11□□□□□ -0.79
SQSTM1-208ENST00000485412 CBX5P45973 191 aa10.11□□□□□ -0.79
SQSTM1-208ENST00000485412 IZUMO4Q1ZYL8 232 aa10.11□□□□□ -0.79
SQSTM1-208ENST00000485412 KCTD21Q4G0X4 260 aa10.11□□□□□ -0.79
SQSTM1-208ENST00000485412 SPINK9Q5DT21 86 aa10.11□□□□□ -0.79
SQSTM1-208ENST00000485412 LINC00336Q6ZUF6 198 aa10.11□□□□□ -0.79
SQSTM1-208ENST00000485412 ST8SIA2Q92186 375 aa10.11□□□□□ -0.79
SQSTM1-208ENST00000485412 OR10C1Q96KK4 312 aa10.11□□□□□ -0.79
SQSTM1-208ENST00000485412 ATP6V0BQ99437 205 aa10.11□□□□□ -0.79
SQSTM1-208ENST00000485412 PKD1P98161 4303 aa10.11□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 47.6 ms