RNA–Protein interactions for RNA: ENST00000469003.5

CCDC28B-204, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 2

Gene CCDC28B, Length 1,235 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-204ENST00000469003 TSC22D3Q99576 134 aa12.37□□□□□ -0.43
CCDC28B-204ENST00000469003 SPAG8Q99932 426 aaPredicted RBP12.37□□□□□ -0.43
CCDC28B-204ENST00000469003 DAZ1Q9NQZ3 744 aaKnown RBP12.37□□□□□ -0.43
CCDC28B-204ENST00000469003 TMEM14BQ9NUH8 114 aa12.37□□□□□ -0.43
CCDC28B-204ENST00000469003 IGHV3-21A0A0B4J1V1 117 aa12.36□□□□□ -0.43
CCDC28B-204ENST00000469003 C15orf61A6NNL5 157 aa12.36□□□□□ -0.43
CCDC28B-204ENST00000469003 F8W735 103 aaPredicted RBP12.36□□□□□ -0.43
CCDC28B-204ENST00000469003 K7EIM0 57 aa12.36□□□□□ -0.43
CCDC28B-204ENST00000469003 NDUFA4O00483 81 aa12.36□□□□□ -0.43
CCDC28B-204ENST00000469003 TSPAN4O14817 238 aa12.36□□□□□ -0.43
CCDC28B-204ENST00000469003 NCS1P62166 190 aa12.36□□□□□ -0.43
CCDC28B-204ENST00000469003 CHRDL1Q9BU40 450 aa12.36□□□□□ -0.43
CCDC28B-204ENST00000469003 DBX1A6NMT0 343 aa12.35□□□□□ -0.43
CCDC28B-204ENST00000469003 K7EMT4 169 aa12.35□□□□□ -0.43
CCDC28B-204ENST00000469003 JTBO76095 146 aa12.35□□□□□ -0.43
CCDC28B-204ENST00000469003 RCVRNP35243 200 aa12.35□□□□□ -0.43
CCDC28B-204ENST00000469003 ADMP35318 185 aa12.35□□□□□ -0.43
CCDC28B-204ENST00000469003 UCP3P55916 312 aa12.35□□□□□ -0.43
CCDC28B-204ENST00000469003 LAMTOR1Q6IAA8 161 aa12.35□□□□□ -0.43
CCDC28B-204ENST00000469003 TBC1D26Q86UD7 250 aa12.35□□□□□ -0.43
CCDC28B-204ENST00000469003 SNX29P2Q8IUI4 249 aa12.35□□□□□ -0.43
CCDC28B-204ENST00000469003 OR1P1Q8NH06 330 aa12.35□□□□□ -0.43
CCDC28B-204ENST00000469003 OVOL2Q9BRP0 275 aa12.35□□□□□ -0.43
CCDC28B-204ENST00000469003 FUNDC2Q9BWH2 189 aa12.35□□□□□ -0.43
CCDC28B-204ENST00000469003 VBP1P61758 197 aa12.34□□□□□ -0.43
CCDC28B-204ENST00000469003 Q56UQ5 140 aa12.34□□□□□ -0.43
CCDC28B-204ENST00000469003 UBAC2Q8NBM4 344 aa12.34□□□□□ -0.43
CCDC28B-204ENST00000469003 SEC22AQ96IW7 307 aa12.34□□□□□ -0.43
CCDC28B-204ENST00000469003 C20orf24Q9BUV8 137 aa12.34□□□□□ -0.43
CCDC28B-204ENST00000469003 IGKV1-39P01597 117 aa12.33□□□□□ -0.44
CCDC28B-204ENST00000469003 IGKV1D-39P04432 117 aa12.33□□□□□ -0.44
CCDC28B-204ENST00000469003 ELK1P19419 428 aa12.33□□□□□ -0.44
CCDC28B-204ENST00000469003 H2BFWTQ7Z2G1 175 aa12.33□□□□□ -0.44
CCDC28B-204ENST00000469003 OR4A16Q8NH70 328 aa12.33□□□□□ -0.44
CCDC28B-204ENST00000469003 UBQLN2Q9UHD9 624 aa12.33□□□□□ -0.44
CCDC28B-204ENST00000469003 IGHV3OR16-8A0A075B7F1 116 aa12.32□□□□□ -0.44
CCDC28B-204ENST00000469003 C15orf62A8K5M9 175 aa12.32□□□□□ -0.44
CCDC28B-204ENST00000469003 HPGDSO60760 199 aa12.32□□□□□ -0.44
CCDC28B-204ENST00000469003 CTSGP08311 255 aa12.32□□□□□ -0.44
CCDC28B-204ENST00000469003 RELQ04864 619 aaPredicted RBP12.32□□□□□ -0.44
CCDC28B-204ENST00000469003 ZNF114Q8NC26 417 aa12.32□□□□□ -0.44
CCDC28B-204ENST00000469003 OR4C46A6NHA9 309 aa12.31□□□□□ -0.44
CCDC28B-204ENST00000469003 I3L2K1 104 aa12.31□□□□□ -0.44
CCDC28B-204ENST00000469003 ZNF207O43670 478 aaKnown RBP12.31□□□□□ -0.44
CCDC28B-204ENST00000469003 FCGR2BP31994 310 aaPredicted RBP12.31□□□□□ -0.44
CCDC28B-204ENST00000469003 RORCP51449 518 aa12.31□□□□□ -0.44
CCDC28B-204ENST00000469003 APOC4P55056 127 aa12.31□□□□□ -0.44
CCDC28B-204ENST00000469003 MFAP4P55083 255 aa12.31□□□□□ -0.44
CCDC28B-204ENST00000469003 PRCDQ00LT1 54 aa12.31□□□□□ -0.44
CCDC28B-204ENST00000469003 ODF3L2Q3SX64 289 aa12.31□□□□□ -0.44
CCDC28B-204ENST00000469003 MZT2AQ6P582 158 aa12.31□□□□□ -0.44
CCDC28B-204ENST00000469003 WFDC3Q8IUB2 231 aa12.31□□□□□ -0.44
CCDC28B-204ENST00000469003 MRGPRFQ96AM1 343 aa12.31□□□□□ -0.44
CCDC28B-204ENST00000469003 MISP3Q96FF7 219 aa12.31□□□□□ -0.44
CCDC28B-204ENST00000469003 ZNF414Q96IQ9 312 aa12.31□□□□□ -0.44
CCDC28B-204ENST00000469003 TXN2Q99757 166 aa12.31□□□□□ -0.44
CCDC28B-204ENST00000469003 SMPXQ9UHP9 88 aa12.31□□□□□ -0.44
CCDC28B-204ENST00000469003 TP53TG1Q9Y2A0 90 aa12.31□□□□□ -0.44
CCDC28B-204ENST00000469003 M0QYG6 137 aa12.3□□□□□ -0.44
CCDC28B-204ENST00000469003 UBE2CO00762 179 aa12.3□□□□□ -0.44
CCDC28B-204ENST00000469003 NUPL2O15504 423 aaKnown RBP12.3□□□□□ -0.44
CCDC28B-204ENST00000469003 CTSDP07339 412 aaPredicted RBP12.3□□□□□ -0.44
CCDC28B-204ENST00000469003 RND3P61587 244 aa12.3□□□□□ -0.44
CCDC28B-204ENST00000469003 HSPE1P61604 102 aaKnown RBP12.3□□□□□ -0.44
CCDC28B-204ENST00000469003 Q6ZWC4 215 aa12.3□□□□□ -0.44
CCDC28B-204ENST00000469003 HYDINQ4G0P3 5121 aa12.29□□□□□ -0.44
CCDC28B-204ENST00000469003 KIR2DL5BA0A0G2JN68 375 aa12.29□□□□□ -0.44
CCDC28B-204ENST00000469003 KIR2DL5BA0A0G2JPC4 375 aa12.29□□□□□ -0.44
CCDC28B-204ENST00000469003 FAM25AB3EWG3 89 aa12.29□□□□□ -0.44
CCDC28B-204ENST00000469003 FAM25CB3EWG5 89 aa12.29□□□□□ -0.44
CCDC28B-204ENST00000469003 FAM25GB3EWG6 89 aa12.29□□□□□ -0.44
CCDC28B-204ENST00000469003 MT-CO2P00403 227 aa12.29□□□□□ -0.44
CCDC28B-204ENST00000469003 LHFPL1Q86WI0 220 aa12.29□□□□□ -0.44
CCDC28B-204ENST00000469003 KIR2DL5AQ8N109 375 aa12.29□□□□□ -0.44
CCDC28B-204ENST00000469003 KIR2DL5BQ8NHK3 375 aa12.29□□□□□ -0.44
CCDC28B-204ENST00000469003 ZNF486Q96H40 463 aaPredicted RBP12.29□□□□□ -0.44
CCDC28B-204ENST00000469003 OR10C1Q96KK4 312 aa12.29□□□□□ -0.44
CCDC28B-204ENST00000469003 IGHV7-4-1A0A0J9YVY3 117 aa12.28□□□□□ -0.44
CCDC28B-204ENST00000469003 CHEK1O14757 476 aa12.28□□□□□ -0.44
CCDC28B-204ENST00000469003 SPRY2O43597 315 aa12.28□□□□□ -0.44
CCDC28B-204ENST00000469003 PGAM2P15259 253 aa12.28□□□□□ -0.44
CCDC28B-204ENST00000469003 BMI1P35226 326 aa12.28□□□□□ -0.44
CCDC28B-204ENST00000469003 ERHP84090 104 aaKnown RBP12.28□□□□□ -0.44
CCDC28B-204ENST00000469003 RNASE12Q5GAN4 147 aaKnown RBP12.28□□□□□ -0.44
CCDC28B-204ENST00000469003 RNASE10Q5GAN6 216 aaKnown RBP12.28□□□□□ -0.44
CCDC28B-204ENST00000469003 TMEM116Q8NCL8 245 aa12.28□□□□□ -0.44
CCDC28B-204ENST00000469003 AP3S1Q92572 193 aa12.28□□□□□ -0.44
CCDC28B-204ENST00000469003 RNF2Q99496 336 aa12.28□□□□□ -0.44
CCDC28B-204ENST00000469003 RHPN1-AS1Q9BWJ2 59 aa12.28□□□□□ -0.44
CCDC28B-204ENST00000469003 NXF2Q9GZY0 626 aaKnown RBP12.28□□□□□ -0.44
CCDC28B-204ENST00000469003 KLK11Q9UBX7 282 aa12.28□□□□□ -0.44
CCDC28B-204ENST00000469003 PLECQ15149 4684 aaKnown RBP12.28□□□□□ -0.44
CCDC28B-204ENST00000469003 YIF1AO95070 293 aa12.27□□□□□ -0.45
CCDC28B-204ENST00000469003 GABARAPO95166 117 aa12.27□□□□□ -0.45
CCDC28B-204ENST00000469003 TBPP20226 339 aa12.27□□□□□ -0.45
CCDC28B-204ENST00000469003 PIGPP57054 158 aa12.27□□□□□ -0.45
CCDC28B-204ENST00000469003 TNFRSF9Q07011 255 aa12.27□□□□□ -0.45
CCDC28B-204ENST00000469003 DEFB135Q30KP9 77 aa12.27□□□□□ -0.45
CCDC28B-204ENST00000469003 ARRDC1Q8N5I2 433 aa12.27□□□□□ -0.45
CCDC28B-204ENST00000469003 STPG3Q8N7X2 389 aa12.27□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 967.1 ms