RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 LSM10Q969L4 123 aaKnown RBP7.15□□□□□ -1.26
USP40-203ENST00000427112 MRPL18Q9H0U6 180 aaKnown RBP7.15□□□□□ -1.26
USP40-203ENST00000427112 HSPB7Q9UBY9 170 aa7.15□□□□□ -1.26
USP40-203ENST00000427112 NAGKQ9UJ70 344 aa7.15□□□□□ -1.26
USP40-203ENST00000427112 ANKHD1Q8IWZ3 2542 aaKnown RBP7.15□□□□□ -1.26
USP40-203ENST00000427112 MUC21A0A0G2JKD1 596 aa7.15□□□□□ -1.26
USP40-203ENST00000427112 MUC21A0A140T8X8 626 aa7.15□□□□□ -1.26
USP40-203ENST00000427112 PYYP10082 97 aa7.15□□□□□ -1.26
USP40-203ENST00000427112 SSBP2P81877 361 aaPredicted RBP7.15□□□□□ -1.26
USP40-203ENST00000427112 MUC21Q5SSG8 566 aa7.15□□□□□ -1.26
USP40-203ENST00000427112 MORN5Q5VZ52 161 aa7.15□□□□□ -1.26
USP40-203ENST00000427112 WFDC8Q8IUA0 241 aa7.15□□□□□ -1.26
USP40-203ENST00000427112 C11orf53Q8IXP5 236 aa7.15□□□□□ -1.26
USP40-203ENST00000427112 STPG3Q8N7X2 389 aa7.15□□□□□ -1.26
USP40-203ENST00000427112 PMCHL2Q9BQD1 86 aa7.15□□□□□ -1.26
USP40-203ENST00000427112 A0A1B0GW64 132 aa7.15□□□□□ -1.27
USP40-203ENST00000427112 OOEPA6NGQ2 149 aa7.15□□□□□ -1.27
USP40-203ENST00000427112 SH2D7A6NKC9 451 aaPredicted RBP7.15□□□□□ -1.27
USP40-203ENST00000427112 C17orf112F2Z3M2 114 aa7.15□□□□□ -1.27
USP40-203ENST00000427112 K7EN84 100 aa7.15□□□□□ -1.27
USP40-203ENST00000427112 DNPH1O43598 174 aa7.15□□□□□ -1.27
USP40-203ENST00000427112 RND2P52198 227 aa7.15□□□□□ -1.27
USP40-203ENST00000427112 ZNF137PP52743 207 aa7.15□□□□□ -1.27
USP40-203ENST00000427112 DIAPH2-AS1Q14236 149 aa7.15□□□□□ -1.27
USP40-203ENST00000427112 GABRA6Q16445 453 aa7.15□□□□□ -1.27
USP40-203ENST00000427112 C22orf34Q6ZV56 151 aa7.15□□□□□ -1.27
USP40-203ENST00000427112 TPPP3Q9BW30 176 aa7.15□□□□□ -1.27
USP40-203ENST00000427112 TCF19Q9Y242 345 aa7.15□□□□□ -1.27
USP40-203ENST00000427112 TMPRSS2O15393 492 aa7.14□□□□□ -1.27
USP40-203ENST00000427112 GNG5P63218 68 aa7.14□□□□□ -1.27
USP40-203ENST00000427112 SMAGPQ0VAQ4 97 aa7.14□□□□□ -1.27
USP40-203ENST00000427112 HCP5Q6MZN7 132 aa7.14□□□□□ -1.27
USP40-203ENST00000427112 TRAT1Q6PIZ9 186 aa7.14□□□□□ -1.27
USP40-203ENST00000427112 UNQ5815/PRO19632Q6UWF5 114 aa7.14□□□□□ -1.27
USP40-203ENST00000427112 FAM168AQ92567 244 aa7.14□□□□□ -1.27
USP40-203ENST00000427112 RAB37Q96AX2 223 aa7.14□□□□□ -1.27
USP40-203ENST00000427112 ZC2HC1AQ96GY0 325 aa7.14□□□□□ -1.27
USP40-203ENST00000427112 RCHY1Q96PM5 261 aa7.14□□□□□ -1.27
USP40-203ENST00000427112 PSMG3Q9BT73 122 aaPredicted RBP7.14□□□□□ -1.27
USP40-203ENST00000427112 SETD2Q9BYW2 2564 aaPredicted RBP7.14□□□□□ -1.27
USP40-203ENST00000427112 IGKV3D-15A0A087WSY6 115 aa7.14□□□□□ -1.27
USP40-203ENST00000427112 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP7.14□□□□□ -1.27
USP40-203ENST00000427112 IL6RP08887 468 aaPredicted RBP7.14□□□□□ -1.27
USP40-203ENST00000427112 CCL3L1P16619 93 aa7.14□□□□□ -1.27
USP40-203ENST00000427112 OR10J1P30954 320 aa7.14□□□□□ -1.27
USP40-203ENST00000427112 FOXA3P55318 350 aaPredicted RBP7.14□□□□□ -1.27
USP40-203ENST00000427112 RNPS1Q15287 305 aaKnown RBP7.14□□□□□ -1.27
USP40-203ENST00000427112 Q6ZWC4 215 aa7.14□□□□□ -1.27
USP40-203ENST00000427112 DEFB124Q8NES8 71 aa7.14□□□□□ -1.27
USP40-203ENST00000427112 TMEM170AQ8WVE7 144 aa7.14□□□□□ -1.27
USP40-203ENST00000427112 IGKV1D-17A0A075B6S4 117 aa7.14□□□□□ -1.27
USP40-203ENST00000427112 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP7.14□□□□□ -1.27
USP40-203ENST00000427112 CEACAM8P31997 349 aaPredicted RBP7.14□□□□□ -1.27
USP40-203ENST00000427112 ZCCHC14Q8WYQ9 949 aaKnown RBP7.14□□□□□ -1.27
USP40-203ENST00000427112 TMEM45BQ96B21 275 aa7.14□□□□□ -1.27
USP40-203ENST00000427112 WIPI2Q9Y4P8 454 aa7.14□□□□□ -1.27
USP40-203ENST00000427112 FAM90A10PA6NDY2 464 aa7.13□□□□□ -1.27
USP40-203ENST00000427112 FAM90A18PA6NE21 464 aa7.13□□□□□ -1.27
USP40-203ENST00000427112 FAM90A16PA6NEW6 464 aa7.13□□□□□ -1.27
USP40-203ENST00000427112 FAM90A20PA6NIJ5 464 aa7.13□□□□□ -1.27
USP40-203ENST00000427112 FAM90A8PA6NJQ4 464 aa7.13□□□□□ -1.27
USP40-203ENST00000427112 FAM90A7PA6NKC0 464 aa7.13□□□□□ -1.27
USP40-203ENST00000427112 PMS2P5A8MQ11 134 aa7.13□□□□□ -1.27
USP40-203ENST00000427112 FAM90A22PA8MWA6 464 aa7.13□□□□□ -1.27
USP40-203ENST00000427112 FAM90A12PA8MX19 464 aa7.13□□□□□ -1.27
USP40-203ENST00000427112 FAM90A5PA8MXJ8 464 aa7.13□□□□□ -1.27
USP40-203ENST00000427112 FAM90A23PA8MXZ1 464 aa7.13□□□□□ -1.27
USP40-203ENST00000427112 FAM90A15PP0C7V4 464 aa7.13□□□□□ -1.27
USP40-203ENST00000427112 FAM90A13PP0C7W8 464 aa7.13□□□□□ -1.27
USP40-203ENST00000427112 FAM90A14PP0C7W9 464 aa7.13□□□□□ -1.27
USP40-203ENST00000427112 FAM90A24PP0C7X0 464 aa7.13□□□□□ -1.27
USP40-203ENST00000427112 DUTP33316 252 aaKnown RBP7.13□□□□□ -1.27
USP40-203ENST00000427112 CENPWQ5EE01 88 aa7.13□□□□□ -1.27
USP40-203ENST00000427112 DPF1Q92782 380 aa7.13□□□□□ -1.27
USP40-203ENST00000427112 NAA38Q9BRA0 125 aaKnown RBP7.13□□□□□ -1.27
USP40-203ENST00000427112 GGTLC1Q9BX51 225 aa7.13□□□□□ -1.27
USP40-203ENST00000427112 SMDT1Q9H4I9 107 aa7.13□□□□□ -1.27
USP40-203ENST00000427112 SNAI2O43623 268 aa7.13□□□□□ -1.27
USP40-203ENST00000427112 CSN3P07498 182 aa7.13□□□□□ -1.27
USP40-203ENST00000427112 ORM2P19652 201 aa7.13□□□□□ -1.27
USP40-203ENST00000427112 TPPP2P59282 170 aa7.13□□□□□ -1.27
USP40-203ENST00000427112 RANP62826 216 aaKnown RBP7.13□□□□□ -1.27
USP40-203ENST00000427112 FAM27E3Q08E93 113 aa7.13□□□□□ -1.27
USP40-203ENST00000427112 SMIM21Q3B7S5 101 aa7.13□□□□□ -1.27
USP40-203ENST00000427112 SAXO1Q8IYX7 474 aa7.13□□□□□ -1.27
USP40-203ENST00000427112 OR8G5Q8NG78 346 aa7.13□□□□□ -1.27
USP40-203ENST00000427112 IGHV3OR16-8A0A075B7F1 116 aa7.13□□□□□ -1.27
USP40-203ENST00000427112 TRAV1-1A0A0B4J248 108 aa7.13□□□□□ -1.27
USP40-203ENST00000427112 ZNF253O75346 499 aa7.13□□□□□ -1.27
USP40-203ENST00000427112 MOSP00540 346 aa7.13□□□□□ -1.27
USP40-203ENST00000427112 BTF3P20290 206 aaKnown RBP7.13□□□□□ -1.27
USP40-203ENST00000427112 SRIP30626 198 aa7.13□□□□□ -1.27
USP40-203ENST00000427112 Q56UQ5 140 aa7.13□□□□□ -1.27
USP40-203ENST00000427112 Q71RC1 249 aaPredicted RBP7.13□□□□□ -1.27
USP40-203ENST00000427112 FAM214BQ7L5A3 538 aa7.13□□□□□ -1.27
USP40-203ENST00000427112 GBGT1Q8N5D6 347 aa7.13□□□□□ -1.27
USP40-203ENST00000427112 WFDC12Q8WWY7 111 aa7.13□□□□□ -1.27
USP40-203ENST00000427112 C2orf88Q9BSF0 95 aa7.13□□□□□ -1.27
USP40-203ENST00000427112 PKIBQ9C010 78 aa7.13□□□□□ -1.27
USP40-203ENST00000427112 ZNF355PQ9NSJ1 428 aa7.13□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 136.2 ms