RNA–Protein interactions for RNA: ENST00000377575.2

HMGN4-201, Transcript of high mobility group nucleosomal binding domain 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGN4, Length 1,225 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN4-201ENST00000377575 TRIM16LQ309B1 348 aa12.75□□□□□ -0.37
HMGN4-201ENST00000377575 CD300EQ496F6 205 aaPredicted RBP12.75□□□□□ -0.37
HMGN4-201ENST00000377575 PLET1Q6UQ28 207 aa12.75□□□□□ -0.37
HMGN4-201ENST00000377575 Q8N1Y9 231 aa12.75□□□□□ -0.37
HMGN4-201ENST00000377575 MARCH1Q8TCQ1 289 aa12.75□□□□□ -0.37
HMGN4-201ENST00000377575 TP53RKQ96S44 253 aa12.75□□□□□ -0.37
HMGN4-201ENST00000377575 ATP6V0BQ99437 205 aa12.75□□□□□ -0.37
HMGN4-201ENST00000377575 PALMDQ9NP74 551 aa12.75□□□□□ -0.37
HMGN4-201ENST00000377575 IZUMO1RA6ND01 250 aa12.74□□□□□ -0.37
HMGN4-201ENST00000377575 A8MZ25 164 aa12.74□□□□□ -0.37
HMGN4-201ENST00000377575 TGOLN2O43493 480 aa12.74□□□□□ -0.37
HMGN4-201ENST00000377575 SURF2Q15527 256 aaPredicted RBP12.74□□□□□ -0.37
HMGN4-201ENST00000377575 FAAP20Q6NZ36 180 aa12.74□□□□□ -0.37
HMGN4-201ENST00000377575 ADAMTSL5Q6ZMM2 481 aa12.74□□□□□ -0.37
HMGN4-201ENST00000377575 SBSPONQ8IVN8 264 aa12.74□□□□□ -0.37
HMGN4-201ENST00000377575 OR4C16Q8NGL9 310 aa12.74□□□□□ -0.37
HMGN4-201ENST00000377575 OR1P1Q8NH06 330 aa12.74□□□□□ -0.37
HMGN4-201ENST00000377575 MCFD2Q8NI22 146 aa12.74□□□□□ -0.37
HMGN4-201ENST00000377575 BSCL2Q96G97 398 aaPredicted RBP12.74□□□□□ -0.37
HMGN4-201ENST00000377575 PRRT1Q99946 306 aa12.74□□□□□ -0.37
HMGN4-201ENST00000377575 THAP7Q9BT49 309 aaPredicted RBP12.74□□□□□ -0.37
HMGN4-201ENST00000377575 ZMAT4Q9H898 229 aa12.74□□□□□ -0.37
HMGN4-201ENST00000377575 PLEKHA3Q9HB20 300 aa12.74□□□□□ -0.37
HMGN4-201ENST00000377575 ZC4H2Q9NQZ6 224 aa12.74□□□□□ -0.37
HMGN4-201ENST00000377575 TMEM213A2RRL7 107 aa12.73□□□□□ -0.37
HMGN4-201ENST00000377575 CCDC160A6NGH7 325 aa12.73□□□□□ -0.37
HMGN4-201ENST00000377575 OR2T8A6NH00 312 aa12.73□□□□□ -0.37
HMGN4-201ENST00000377575 GSTZ1O43708 216 aaPredicted RBP12.73□□□□□ -0.37
HMGN4-201ENST00000377575 MFAP2P55001 183 aa12.73□□□□□ -0.37
HMGN4-201ENST00000377575 HSPE1P61604 102 aaKnown RBP12.73□□□□□ -0.37
HMGN4-201ENST00000377575 DEFB114Q30KQ6 69 aa12.73□□□□□ -0.37
HMGN4-201ENST00000377575 SPSB3Q6PJ21 355 aa12.73□□□□□ -0.37
HMGN4-201ENST00000377575 OR2C3Q8N628 320 aa12.73□□□□□ -0.37
HMGN4-201ENST00000377575 ZNF114Q8NC26 417 aa12.73□□□□□ -0.37
HMGN4-201ENST00000377575 RNASE11Q8TAA1 199 aaKnown RBP12.73□□□□□ -0.37
HMGN4-201ENST00000377575 NXF2Q9GZY0 626 aaKnown RBP12.73□□□□□ -0.37
HMGN4-201ENST00000377575 SLC2A8Q9NY64 477 aa12.73□□□□□ -0.37
HMGN4-201ENST00000377575 C21orf62Q9NYP8 219 aa12.73□□□□□ -0.37
HMGN4-201ENST00000377575 CEPT1Q9Y6K0 416 aa12.73□□□□□ -0.37
HMGN4-201ENST00000377575 IGKV1-5P01602 117 aa12.72□□□□□ -0.37
HMGN4-201ENST00000377575 CBLN1P23435 193 aa12.72□□□□□ -0.37
HMGN4-201ENST00000377575 UCP1P25874 307 aa12.72□□□□□ -0.37
HMGN4-201ENST00000377575 ERHP84090 104 aaKnown RBP12.72□□□□□ -0.37
HMGN4-201ENST00000377575 SLC35G3Q8N808 338 aa12.72□□□□□ -0.37
HMGN4-201ENST00000377575 CACNG8Q8WXS5 425 aa12.72□□□□□ -0.37
HMGN4-201ENST00000377575 MARC2Q969Z3 335 aa12.72□□□□□ -0.37
HMGN4-201ENST00000377575 RRNAD1Q96FB5 475 aaKnown RBP12.72□□□□□ -0.37
HMGN4-201ENST00000377575 PDCD10Q9BUL8 212 aa12.72□□□□□ -0.37
HMGN4-201ENST00000377575 ZNF436Q9C0F3 470 aaPredicted RBP12.72□□□□□ -0.37
HMGN4-201ENST00000377575 C19orf73Q9NVV2 129 aa12.72□□□□□ -0.37
HMGN4-201ENST00000377575 GAR1Q9NY12 217 aaKnown RBP12.72□□□□□ -0.37
HMGN4-201ENST00000377575 UFC1Q9Y3C8 167 aa12.72□□□□□ -0.37
HMGN4-201ENST00000377575 STAB2Q8WWQ8 2551 aa12.71□□□□□ -0.37
HMGN4-201ENST00000377575 TEX13DA0A0J9YY54 714 aaPredicted RBP12.71□□□□□ -0.37
HMGN4-201ENST00000377575 ANKRD20A5PA0PJZ0 165 aa12.71□□□□□ -0.37
HMGN4-201ENST00000377575 FABP12A6NFH5 140 aa12.71□□□□□ -0.37
HMGN4-201ENST00000377575 K7EIM0 57 aa12.71□□□□□ -0.37
HMGN4-201ENST00000377575 P0C879 139 aa12.71□□□□□ -0.37
HMGN4-201ENST00000377575 EDN2P20800 178 aa12.71□□□□□ -0.37
HMGN4-201ENST00000377575 TNFSF8P32971 234 aa12.71□□□□□ -0.37
HMGN4-201ENST00000377575 ELLP55199 621 aaPredicted RBP12.71□□□□□ -0.37
HMGN4-201ENST00000377575 CD81P60033 236 aa12.71□□□□□ -0.37
HMGN4-201ENST00000377575 GUCA2BQ16661 112 aa12.71□□□□□ -0.37
HMGN4-201ENST00000377575 SP6Q3SY56 376 aa12.71□□□□□ -0.37
HMGN4-201ENST00000377575 Q56UQ5 140 aa12.71□□□□□ -0.37
HMGN4-201ENST00000377575 ZNF57Q68EA5 555 aaPredicted RBP12.71□□□□□ -0.37
HMGN4-201ENST00000377575 UNQ9165/PRO28630Q6UXU0 137 aa12.71□□□□□ -0.37
HMGN4-201ENST00000377575 UBAC2Q8NBM4 344 aa12.71□□□□□ -0.37
HMGN4-201ENST00000377575 SCARB1Q8WTV0 552 aa12.71□□□□□ -0.37
HMGN4-201ENST00000377575 NAA60Q9H7X0 242 aa12.71□□□□□ -0.37
HMGN4-201ENST00000377575 TUBA4BQ9H853 241 aa12.71□□□□□ -0.37
HMGN4-201ENST00000377575 SCP2D1Q9UJQ7 156 aa12.71□□□□□ -0.37
HMGN4-201ENST00000377575 IGHV3-21A0A0B4J1V1 117 aa12.7□□□□□ -0.38
HMGN4-201ENST00000377575 IGHV3-35A0A0C4DH35 117 aa12.7□□□□□ -0.38
HMGN4-201ENST00000377575 OR5AC1P0C628 307 aa12.7□□□□□ -0.38
HMGN4-201ENST00000377575 IZUMO4Q1ZYL8 232 aa12.7□□□□□ -0.38
HMGN4-201ENST00000377575 FAM219AQ8IW50 185 aa12.7□□□□□ -0.38
HMGN4-201ENST00000377575 UXS1Q8NBZ7 420 aa12.7□□□□□ -0.38
HMGN4-201ENST00000377575 OR51S1Q8NGJ8 323 aa12.7□□□□□ -0.38
HMGN4-201ENST00000377575 TMEM190Q8WZ59 177 aa12.7□□□□□ -0.38
HMGN4-201ENST00000377575 MISP3Q96FF7 219 aa12.7□□□□□ -0.38
HMGN4-201ENST00000377575 RCHY1Q96PM5 261 aa12.7□□□□□ -0.38
HMGN4-201ENST00000377575 NEURL2Q9BR09 285 aa12.7□□□□□ -0.38
HMGN4-201ENST00000377575 TMEM222Q9H0R3 208 aa12.7□□□□□ -0.38
HMGN4-201ENST00000377575 C5orf66Q9H5L9 145 aa12.7□□□□□ -0.38
HMGN4-201ENST00000377575 TENM3Q9P273 2699 aa12.69□□□□□ -0.38
HMGN4-201ENST00000377575 NDUFA4O00483 81 aa12.69□□□□□ -0.38
HMGN4-201ENST00000377575 ST8SIA3O43173 380 aa12.69□□□□□ -0.38
HMGN4-201ENST00000377575 IFNA17P01571 189 aa12.69□□□□□ -0.38
HMGN4-201ENST00000377575 DHODHQ02127 395 aa12.69□□□□□ -0.38
HMGN4-201ENST00000377575 TM4SF20Q53R12 229 aa12.69□□□□□ -0.38
HMGN4-201ENST00000377575 SCGB3A2Q96PL1 93 aa12.69□□□□□ -0.38
HMGN4-201ENST00000377575 SOSTQ9BQB4 213 aa12.69□□□□□ -0.38
HMGN4-201ENST00000377575 RTBDNQ9BSG5 229 aaPredicted RBP12.69□□□□□ -0.38
HMGN4-201ENST00000377575 DAZ1Q9NQZ3 744 aaKnown RBP12.69□□□□□ -0.38
HMGN4-201ENST00000377575 MCUBQ9NWR8 336 aa12.69□□□□□ -0.38
HMGN4-201ENST00000377575 MRPL27Q9P0M9 148 aaKnown RBP12.69□□□□□ -0.38
HMGN4-201ENST00000377575 MLXQ9UH92 298 aa12.69□□□□□ -0.38
HMGN4-201ENST00000377575 HUWE1Q7Z6Z7 4374 aaKnown RBP12.69□□□□□ -0.38
HMGN4-201ENST00000377575 A0A0B4J293 547 aa12.68□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 68.3 ms