RNA–Protein interactions for RNA: ENST00000366942.3

USH2A-202, Transcript of usherin, humanhuman

TSL 1 (best) BASIC

Gene USH2A, Length 6,320 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-202ENST00000366942 CHCHD2Q9Y6H1 151 aaPredicted RBP3.38□□□□□ -1.87
USH2A-202ENST00000366942 BCORQ6W2J9 1755 aa3.38□□□□□ -1.87
USH2A-202ENST00000366942 IGHV1-18A0A0C4DH31 117 aa3.38□□□□□ -1.87
USH2A-202ENST00000366942 MSGN1A6NI15 193 aa3.38□□□□□ -1.87
USH2A-202ENST00000366942 SSSCA1O60232 199 aa3.38□□□□□ -1.87
USH2A-202ENST00000366942 PEX11BO96011 259 aa3.38□□□□□ -1.87
USH2A-202ENST00000366942 LGALS1P09382 135 aaKnown RBP3.38□□□□□ -1.87
USH2A-202ENST00000366942 CAMPP49913 170 aa3.38□□□□□ -1.87
USH2A-202ENST00000366942 AQP4P55087 323 aa3.38□□□□□ -1.87
USH2A-202ENST00000366942 KIAA0141Q14154 515 aaPredicted RBP3.38□□□□□ -1.87
USH2A-202ENST00000366942 RNF152Q8N8N0 203 aa3.38□□□□□ -1.87
USH2A-202ENST00000366942 PGLYRP3Q96LB9 341 aa3.38□□□□□ -1.87
USH2A-202ENST00000366942 SLC2A9Q9NRM0 540 aa3.38□□□□□ -1.87
USH2A-202ENST00000366942 XIRP1Q702N8 1843 aaKnown RBP3.38□□□□□ -1.87
USH2A-202ENST00000366942 RGPD8O14715 1765 aaPredicted RBP3.38□□□□□ -1.87
USH2A-202ENST00000366942 TRAV8-3A0A0A6YYJ7 113 aa3.38□□□□□ -1.87
USH2A-202ENST00000366942 CGB1A6NKQ9 187 aa3.38□□□□□ -1.87
USH2A-202ENST00000366942 IFI27P40305 119 aaPredicted RBP3.38□□□□□ -1.87
USH2A-202ENST00000366942 ETV1P50549 477 aa3.38□□□□□ -1.87
USH2A-202ENST00000366942 MFAP2P55001 183 aa3.38□□□□□ -1.87
USH2A-202ENST00000366942 ADIRFQ15847 76 aa3.38□□□□□ -1.87
USH2A-202ENST00000366942 C8orf82Q6P1X6 216 aaPredicted RBP3.38□□□□□ -1.87
USH2A-202ENST00000366942 CBLN3Q6UW01 205 aa3.38□□□□□ -1.87
USH2A-202ENST00000366942 SIGLEC15Q6ZMC9 328 aa3.38□□□□□ -1.87
USH2A-202ENST00000366942 ANGPTL6Q8NI99 470 aa3.38□□□□□ -1.87
USH2A-202ENST00000366942 WIPF2Q8TF74 440 aaPredicted RBP3.38□□□□□ -1.87
USH2A-202ENST00000366942 RNF133Q8WVZ7 376 aa3.38□□□□□ -1.87
USH2A-202ENST00000366942 AQP3Q92482 292 aa3.38□□□□□ -1.87
USH2A-202ENST00000366942 MRPL32Q9BYC8 188 aaKnown RBP3.38□□□□□ -1.87
USH2A-202ENST00000366942 CLCF1Q9UBD9 225 aa3.38□□□□□ -1.87
USH2A-202ENST00000366942 CLEC2DQ9UHP7 191 aa3.38□□□□□ -1.87
USH2A-202ENST00000366942 TET1Q8NFU7 2136 aa3.38□□□□□ -1.87
USH2A-202ENST00000366942 CACNA1DQ01668 2161 aa3.38□□□□□ -1.87
USH2A-202ENST00000366942 A0A1W2PPV9 198 aa3.38□□□□□ -1.87
USH2A-202ENST00000366942 SUPT4H1P63272 117 aaKnown RBP3.38□□□□□ -1.87
USH2A-202ENST00000366942 PSG6Q00889 435 aa3.38□□□□□ -1.87
USH2A-202ENST00000366942 Q0VG73 95 aa3.38□□□□□ -1.87
USH2A-202ENST00000366942 FHL1Q13642 323 aa3.38□□□□□ -1.87
USH2A-202ENST00000366942 RHOHQ15669 191 aa3.38□□□□□ -1.87
USH2A-202ENST00000366942 LBHQ53QV2 105 aaPredicted RBP3.38□□□□□ -1.87
USH2A-202ENST00000366942 HEPN1Q6WQI6 88 aa3.38□□□□□ -1.87
USH2A-202ENST00000366942 RPS27LQ71UM5 84 aaKnown RBP3.38□□□□□ -1.87
USH2A-202ENST00000366942 WFDC11Q8NEX6 87 aa3.38□□□□□ -1.87
USH2A-202ENST00000366942 OR10AC1Q8NH08 325 aa3.38□□□□□ -1.87
USH2A-202ENST00000366942 GATAD1Q8WUU5 269 aa3.38□□□□□ -1.87
USH2A-202ENST00000366942 Q9HAA7 133 aa3.38□□□□□ -1.87
USH2A-202ENST00000366942 SPRR3Q9UBC9 169 aa3.38□□□□□ -1.87
USH2A-202ENST00000366942 A0A1B0GWB2 263 aa3.37□□□□□ -1.87
USH2A-202ENST00000366942 MEX3AA1L020 520 aaKnown RBP3.37□□□□□ -1.87
USH2A-202ENST00000366942 CTDSP2O14595 271 aa3.37□□□□□ -1.87
USH2A-202ENST00000366942 PLA2G1BP04054 148 aaKnown RBP3.37□□□□□ -1.87
USH2A-202ENST00000366942 SCGB1A1P11684 91 aa3.37□□□□□ -1.87
USH2A-202ENST00000366942 TNFRSF1BP20333 461 aa3.37□□□□□ -1.87
USH2A-202ENST00000366942 CACNG8Q8WXS5 425 aa3.37□□□□□ -1.87
USH2A-202ENST00000366942 TVP23CQ96ET8 276 aa3.37□□□□□ -1.87
USH2A-202ENST00000366942 OR10C1Q96KK4 312 aa3.37□□□□□ -1.87
USH2A-202ENST00000366942 AMELYQ99218 206 aa3.37□□□□□ -1.87
USH2A-202ENST00000366942 hCG_2014768A0A024R1R8 64 aa3.37□□□□□ -1.87
USH2A-202ENST00000366942 TRBV25-1A0A075B6N4 114 aa3.37□□□□□ -1.87
USH2A-202ENST00000366942 IGHV2-26A0A0B4J1V2 119 aa3.37□□□□□ -1.87
USH2A-202ENST00000366942 NHLH2Q02577 135 aa3.37□□□□□ -1.87
USH2A-202ENST00000366942 CD300CQ08708 224 aa3.37□□□□□ -1.87
USH2A-202ENST00000366942 H3F3CQ6NXT2 135 aa3.37□□□□□ -1.87
USH2A-202ENST00000366942 DUX4L9Q6RFH8 374 aaPredicted RBP3.37□□□□□ -1.87
USH2A-202ENST00000366942 WDR82Q6UXN9 313 aa3.37□□□□□ -1.87
USH2A-202ENST00000366942 ERASQ7Z444 233 aa3.37□□□□□ -1.87
USH2A-202ENST00000366942 THAP8Q8NA92 274 aa3.37□□□□□ -1.87
USH2A-202ENST00000366942 ADAT3Q96EY9 351 aaPredicted RBP3.37□□□□□ -1.87
USH2A-202ENST00000366942 RHPN1-AS1Q9BWJ2 59 aa3.37□□□□□ -1.87
USH2A-202ENST00000366942 ZFYVE26Q68DK2 2539 aa3.37□□□□□ -1.87
USH2A-202ENST00000366942 MARF1Q9Y4F3 1742 aaKnown RBP3.37□□□□□ -1.87
USH2A-202ENST00000366942 THSD7AQ9UPZ6 1657 aa3.37□□□□□ -1.87
USH2A-202ENST00000366942 RNF222A6NCQ9 220 aa3.37□□□□□ -1.87
USH2A-202ENST00000366942 CTSDP07339 412 aaPredicted RBP3.37□□□□□ -1.87
USH2A-202ENST00000366942 WNT3P56703 355 aa3.37□□□□□ -1.87
USH2A-202ENST00000366942 PSG7Q13046 419 aa3.37□□□□□ -1.87
USH2A-202ENST00000366942 CTF1Q16619 201 aa3.37□□□□□ -1.87
USH2A-202ENST00000366942 TMEM236Q5W0B7 351 aa3.37□□□□□ -1.87
USH2A-202ENST00000366942 ABLIM2Q6H8Q1 611 aa3.37□□□□□ -1.87
USH2A-202ENST00000366942 LINC00477Q96M19 166 aa3.37□□□□□ -1.87
USH2A-202ENST00000366942 C1QTNF5Q9BXJ0 243 aa3.37□□□□□ -1.87
USH2A-202ENST00000366942 C3orf85A0A1B0GTC6 90 aa3.37□□□□□ -1.87
USH2A-202ENST00000366942 UBE2L5PA0A1B0GUS4 154 aa3.37□□□□□ -1.87
USH2A-202ENST00000366942 A0A1W2PPQ1 181 aa3.37□□□□□ -1.87
USH2A-202ENST00000366942 SMIM9A6NGZ8 99 aa3.37□□□□□ -1.87
USH2A-202ENST00000366942 ADMP35318 185 aa3.37□□□□□ -1.87
USH2A-202ENST00000366942 KRTDAPP60985 99 aa3.37□□□□□ -1.87
USH2A-202ENST00000366942 C21orf62-AS1Q17RA5 79 aa3.37□□□□□ -1.87
USH2A-202ENST00000366942 MRPL54Q6P161 138 aaKnown RBP3.37□□□□□ -1.87
USH2A-202ENST00000366942 CEND1Q8N111 149 aa3.37□□□□□ -1.87
USH2A-202ENST00000366942 ZNF645Q8N7E2 425 aa3.37□□□□□ -1.87
USH2A-202ENST00000366942 SPACA5Q96QH8 159 aa3.37□□□□□ -1.87
USH2A-202ENST00000366942 RGPD3A6NKT7 1758 aaPredicted RBP3.37□□□□□ -1.87
USH2A-202ENST00000366942 RGPD5Q99666 1765 aa3.37□□□□□ -1.87
USH2A-202ENST00000366942 IGHV3-21A0A0B4J1V1 117 aa3.37□□□□□ -1.87
USH2A-202ENST00000366942 TRBV4-1A0A0J9YWV2 114 aa3.37□□□□□ -1.87
USH2A-202ENST00000366942 C5orf52A6NGY3 159 aa3.37□□□□□ -1.87
USH2A-202ENST00000366942 INS-IGF2F8WCM5 200 aa3.37□□□□□ -1.87
USH2A-202ENST00000366942 GALP22466 123 aa3.37□□□□□ -1.87
USH2A-202ENST00000366942 IGLV3-21P80748 117 aaPredicted RBP3.37□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms