RNA–Protein interactions for RNA: ENST00000307340.7

USH2A-201, Transcript of usherin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USH2A, Length 18,883 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-201ENST00000307340 OTORQ9NRC9 128 aa3.4□□□□□ -1.86
USH2A-201ENST00000307340 IL6RP08887 468 aaPredicted RBP3.4□□□□□ -1.86
USH2A-201ENST00000307340 SSTR5P35346 364 aa3.4□□□□□ -1.86
USH2A-201ENST00000307340 EDA2RQ9HAV5 297 aa3.4□□□□□ -1.86
USH2A-201ENST00000307340 EP300Q09472 2414 aaPredicted RBP3.4□□□□□ -1.86
USH2A-201ENST00000307340 MOSP00540 346 aa3.4□□□□□ -1.86
USH2A-201ENST00000307340 CSRP1P21291 193 aaKnown RBP3.4□□□□□ -1.86
USH2A-201ENST00000307340 ZNF585BQ52M93 769 aa3.4□□□□□ -1.86
USH2A-201ENST00000307340 MDP1Q86V88 176 aa3.4□□□□□ -1.86
USH2A-201ENST00000307340 NHP2Q9NX24 153 aaKnown RBP3.4□□□□□ -1.86
USH2A-201ENST00000307340 TRAV21A0A0B4J279 112 aa3.4□□□□□ -1.87
USH2A-201ENST00000307340 SRIP30626 198 aa3.4□□□□□ -1.87
USH2A-201ENST00000307340 HSD52Q0P140 79 aa3.4□□□□□ -1.87
USH2A-201ENST00000307340 ACP7Q6ZNF0 438 aa3.4□□□□□ -1.87
USH2A-201ENST00000307340 GLRX5Q86SX6 157 aa3.4□□□□□ -1.87
USH2A-201ENST00000307340 SPINT1O43278 529 aa3.4□□□□□ -1.87
USH2A-201ENST00000307340 NDUFC2O95298 119 aa3.4□□□□□ -1.87
USH2A-201ENST00000307340 F12P00748 615 aaPredicted RBP3.4□□□□□ -1.87
USH2A-201ENST00000307340 AZU1P20160 251 aa3.4□□□□□ -1.87
USH2A-201ENST00000307340 Q0VG73 95 aa3.4□□□□□ -1.87
USH2A-201ENST00000307340 Q6ZPB1 254 aaPredicted RBP3.4□□□□□ -1.87
USH2A-201ENST00000307340 RLN3Q8WXF3 142 aa3.4□□□□□ -1.87
USH2A-201ENST00000307340 ONECUT1Q9UBC0 465 aa3.4□□□□□ -1.87
USH2A-201ENST00000307340 NPSP0C0P6 89 aa3.4□□□□□ -1.87
USH2A-201ENST00000307340 ARL14EPLP0DKL9 152 aa3.4□□□□□ -1.87
USH2A-201ENST00000307340 IMMP1LQ96LU5 166 aa3.4□□□□□ -1.87
USH2A-201ENST00000307340 SLC25A22Q9H936 323 aa3.4□□□□□ -1.87
USH2A-201ENST00000307340 IGHV2OR16-5A0A0B4J2B6 119 aa3.4□□□□□ -1.87
USH2A-201ENST00000307340 H3BMM0 161 aa3.4□□□□□ -1.87
USH2A-201ENST00000307340 LMO1P25800 156 aa3.4□□□□□ -1.87
USH2A-201ENST00000307340 MISP3Q96FF7 219 aa3.4□□□□□ -1.87
USH2A-201ENST00000307340 HBDP02042 147 aa3.4□□□□□ -1.87
USH2A-201ENST00000307340 HIST1H4GQ99525 98 aa3.4□□□□□ -1.87
USH2A-201ENST00000307340 EFNA4P52798 201 aa3.4□□□□□ -1.87
USH2A-201ENST00000307340 PRSS12P56730 875 aa3.4□□□□□ -1.87
USH2A-201ENST00000307340 TMEM95Q3KNT9 176 aa3.4□□□□□ -1.87
USH2A-201ENST00000307340 WDR25Q64LD2 544 aaPredicted RBP3.4□□□□□ -1.87
USH2A-201ENST00000307340 KIR3DL3Q8N743 410 aa3.4□□□□□ -1.87
USH2A-201ENST00000307340 RAX2Q96IS3 184 aa3.4□□□□□ -1.87
USH2A-201ENST00000307340 A0A0G2JMM0 328 aa3.4□□□□□ -1.87
USH2A-201ENST00000307340 A0A1W2PPB8 328 aa3.4□□□□□ -1.87
USH2A-201ENST00000307340 A0A1W2PRS3 328 aa3.4□□□□□ -1.87
USH2A-201ENST00000307340 KIR3DP1A8MWS1 328 aa3.4□□□□□ -1.87
USH2A-201ENST00000307340 EDN3P14138 238 aa3.4□□□□□ -1.87
USH2A-201ENST00000307340 SPATA45Q537H7 98 aa3.4□□□□□ -1.87
USH2A-201ENST00000307340 WFDC1Q9HC57 220 aa3.4□□□□□ -1.87
USH2A-201ENST00000307340 INS-IGF2F8WCM5 200 aa3.4□□□□□ -1.87
USH2A-201ENST00000307340 PRCDQ00LT1 54 aa3.4□□□□□ -1.87
USH2A-201ENST00000307340 CRIPAKQ8N1N5 446 aa3.4□□□□□ -1.87
USH2A-201ENST00000307340 C8orf44Q96CB5 159 aa3.4□□□□□ -1.87
USH2A-201ENST00000307340 CACNA1HO95180 2353 aa3.4□□□□□ -1.87
USH2A-201ENST00000307340 HIGD1CA8MV81 97 aa3.4□□□□□ -1.87
USH2A-201ENST00000307340 CCL2P13500 99 aa3.4□□□□□ -1.87
USH2A-201ENST00000307340 P2RY4P51582 365 aa3.4□□□□□ -1.87
USH2A-201ENST00000307340 RNASEKQ6P5S7 137 aaKnown RBP3.4□□□□□ -1.87
USH2A-201ENST00000307340 ZNF788Q6ZQV5 615 aa3.4□□□□□ -1.87
USH2A-201ENST00000307340 KLF14Q8TD94 323 aaPredicted RBP3.4□□□□□ -1.87
USH2A-201ENST00000307340 DSCAMO60469 2012 aa3.39□□□□□ -1.87
USH2A-201ENST00000307340 LGALS3P17931 250 aaKnown RBP3.39□□□□□ -1.87
USH2A-201ENST00000307340 IFITM3Q01628 133 aa3.39□□□□□ -1.87
USH2A-201ENST00000307340 RPRMLQ8N4K4 120 aa3.39□□□□□ -1.87
USH2A-201ENST00000307340 WIPF2Q8TF74 440 aaPredicted RBP3.39□□□□□ -1.87
USH2A-201ENST00000307340 TMEM208Q9BTX3 173 aa3.39□□□□□ -1.87
USH2A-201ENST00000307340 IGHV4-34P06331 123 aa3.39□□□□□ -1.87
USH2A-201ENST00000307340 EMP1P54849 157 aa3.39□□□□□ -1.87
USH2A-201ENST00000307340 ID3Q02535 119 aa3.39□□□□□ -1.87
USH2A-201ENST00000307340 TMEM75Q8N9X5 138 aa3.39□□□□□ -1.87
USH2A-201ENST00000307340 KLK13Q9UKR3 277 aa3.39□□□□□ -1.87
USH2A-201ENST00000307340 PAM16Q9Y3D7 125 aa3.39□□□□□ -1.87
USH2A-201ENST00000307340 TCRBV4S1A1TA0A5B7 111 aa3.39□□□□□ -1.87
USH2A-201ENST00000307340 CCL25O15444 150 aa3.39□□□□□ -1.87
USH2A-201ENST00000307340 SELENOPP49908 381 aa3.39□□□□□ -1.87
USH2A-201ENST00000307340 CRYBA4P53673 196 aa3.39□□□□□ -1.87
USH2A-201ENST00000307340 PSG4Q00888 419 aa3.39□□□□□ -1.87
USH2A-201ENST00000307340 TMEM155Q4W5P6 130 aa3.39□□□□□ -1.87
USH2A-201ENST00000307340 PPP1R27Q86WC6 154 aa3.39□□□□□ -1.87
USH2A-201ENST00000307340 DYNLRB2Q8TF09 96 aa3.39□□□□□ -1.87
USH2A-201ENST00000307340 TRIOBPQ9H2D6 2365 aa3.39□□□□□ -1.87
USH2A-201ENST00000307340 LGALS1P09382 135 aaKnown RBP3.39□□□□□ -1.87
USH2A-201ENST00000307340 TMEM14CQ9P0S9 112 aa3.39□□□□□ -1.87
USH2A-201ENST00000307340 COL4A4P53420 1690 aaPredicted RBP3.39□□□□□ -1.87
USH2A-201ENST00000307340 IGHV1-24A0A0C4DH33 117 aa3.39□□□□□ -1.87
USH2A-201ENST00000307340 NAPSAO96009 420 aa3.39□□□□□ -1.87
USH2A-201ENST00000307340 IGHV3-13P01766 116 aa3.39□□□□□ -1.87
USH2A-201ENST00000307340 HGFACQ04756 655 aa3.39□□□□□ -1.87
USH2A-201ENST00000307340 TNXAQ16473 311 aa3.39□□□□□ -1.87
USH2A-201ENST00000307340 C16orf54Q6UWD8 224 aa3.39□□□□□ -1.87
USH2A-201ENST00000307340 FOXL2NBQ6ZUU3 175 aa3.39□□□□□ -1.87
USH2A-201ENST00000307340 LINC00469Q8N7U9 141 aa3.39□□□□□ -1.87
USH2A-201ENST00000307340 TMEM74BQ9NUR3 256 aa3.39□□□□□ -1.87
USH2A-201ENST00000307340 NANOS3P60323 173 aaKnown RBP3.39□□□□□ -1.87
USH2A-201ENST00000307340 CX3CL1P78423 397 aa3.39□□□□□ -1.87
USH2A-201ENST00000307340 FAM27D1Q5T7N8 215 aa3.39□□□□□ -1.87
USH2A-201ENST00000307340 COX11Q9Y6N1 276 aa3.39□□□□□ -1.87
USH2A-201ENST00000307340 GREM1O60565 184 aa3.39□□□□□ -1.87
USH2A-201ENST00000307340 TNFSF13O75888 250 aa3.39□□□□□ -1.87
USH2A-201ENST00000307340 IGFL3Q6UXB1 125 aa3.39□□□□□ -1.87
USH2A-201ENST00000307340 MRPL18Q9H0U6 180 aaKnown RBP3.39□□□□□ -1.87
USH2A-201ENST00000307340 ANKRD10Q9NXR5 420 aa3.39□□□□□ -1.87
USH2A-201ENST00000307340 R4GN57 208 aa3.39□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms