RNA–Protein interactions for RNA: ENST00000263708.6

PTPN4-201, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPN4, Length 10,300 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-201ENST00000263708 NBEAP1P0C6P0 100 aa9.67□□□□□ -0.86
PTPN4-201ENST00000263708 RPL34P49207 117 aaKnown RBP9.67□□□□□ -0.86
PTPN4-201ENST00000263708 RIPPLY3P57055 190 aa9.67□□□□□ -0.86
PTPN4-201ENST00000263708 RPP21Q9H633 154 aaKnown RBP9.67□□□□□ -0.86
PTPN4-201ENST00000263708 C21orf62Q9NYP8 219 aa9.67□□□□□ -0.86
PTPN4-201ENST00000263708 COQ2Q96H96 371 aa9.67□□□□□ -0.86
PTPN4-201ENST00000263708 CXorf51AA0A1B0GTR3 108 aa9.67□□□□□ -0.86
PTPN4-201ENST00000263708 BSPH1Q075Z2 132 aa9.67□□□□□ -0.86
PTPN4-201ENST00000263708 NHP2Q9NX24 153 aaKnown RBP9.67□□□□□ -0.86
PTPN4-201ENST00000263708 SLC17A3O00476 420 aa9.67□□□□□ -0.86
PTPN4-201ENST00000263708 NOVP48745 357 aa9.67□□□□□ -0.86
PTPN4-201ENST00000263708 SRSF7Q16629 238 aaKnown RBP eCLIP9.67□□□□□ -0.862e-8■■■■■ 27
PTPN4-201ENST00000263708 RSPO4Q2I0M5 234 aaPredicted RBP9.67□□□□□ -0.86
PTPN4-201ENST00000263708 C1QTNF12Q5T7M4 302 aa9.67□□□□□ -0.86
PTPN4-201ENST00000263708 MRAPQ8TCY5 172 aa9.67□□□□□ -0.86
PTPN4-201ENST00000263708 FAM19A2Q8N3H0 131 aa9.66□□□□□ -0.86
PTPN4-201ENST00000263708 ELOVL5Q9NYP7 299 aa9.66□□□□□ -0.86
PTPN4-201ENST00000263708 CD33P20138 364 aa9.66□□□□□ -0.86
PTPN4-201ENST00000263708 ATXN8Q156A1 80 aa9.66□□□□□ -0.86
PTPN4-201ENST00000263708 VAX1Q5SQQ9 334 aa9.66□□□□□ -0.86
PTPN4-201ENST00000263708 CYSLTR1Q9Y271 337 aa9.66□□□□□ -0.86
PTPN4-201ENST00000263708 WNK2Q9Y3S1 2297 aa9.66□□□□□ -0.86
PTPN4-201ENST00000263708 MSRB3Q8IXL7 192 aa9.66□□□□□ -0.86
PTPN4-201ENST00000263708 LINC01465Q8N7H1 131 aa9.66□□□□□ -0.86
PTPN4-201ENST00000263708 NHSQ6T4R5 1651 aa9.66□□□□□ -0.86
PTPN4-201ENST00000263708 SAP30O75446 220 aa9.66□□□□□ -0.86
PTPN4-201ENST00000263708 C8orf46Q8TAG6 207 aa9.66□□□□□ -0.86
PTPN4-201ENST00000263708 Q9H3A6 140 aa9.66□□□□□ -0.86
PTPN4-201ENST00000263708 ANK1P16157 1881 aa9.66□□□□□ -0.86
PTPN4-201ENST00000263708 KLF4O43474 513 aa9.66□□□□□ -0.86
PTPN4-201ENST00000263708 RPL35AP18077 110 aaKnown RBP9.66□□□□□ -0.86
PTPN4-201ENST00000263708 CEACAM8P31997 349 aaPredicted RBP9.66□□□□□ -0.86
PTPN4-201ENST00000263708 FAM209AQ5JX71 171 aa9.66□□□□□ -0.86
PTPN4-201ENST00000263708 KIAA1551Q9HCM1 1747 aa9.66□□□□□ -0.86
PTPN4-201ENST00000263708 CXCL2P19875 107 aa9.66□□□□□ -0.86
PTPN4-201ENST00000263708 TMEM54Q969K7 222 aa9.66□□□□□ -0.86
PTPN4-201ENST00000263708 TNKS1BP1Q9C0C2 1729 aaKnown RBP9.66□□□□□ -0.86
PTPN4-201ENST00000263708 PCNX2A6NKB5 2137 aa9.66□□□□□ -0.86
PTPN4-201ENST00000263708 H3BUT2 72 aa9.66□□□□□ -0.86
PTPN4-201ENST00000263708 GPX4P36969 197 aaPredicted RBP9.66□□□□□ -0.86
PTPN4-201ENST00000263708 ERVK11-1P61568 191 aa9.66□□□□□ -0.86
PTPN4-201ENST00000263708 CHTOPQ9Y3Y2 248 aaKnown RBP9.66□□□□□ -0.86
PTPN4-201ENST00000263708 RFLNBQ8N5W9 214 aa9.65□□□□□ -0.86
PTPN4-201ENST00000263708 NCOR1O75376 2440 aa9.65□□□□□ -0.86
PTPN4-201ENST00000263708 QSER1Q2KHR3 1735 aa9.65□□□□□ -0.86
PTPN4-201ENST00000263708 FAM90A26D6RGX4 464 aa9.65□□□□□ -0.86
PTPN4-201ENST00000263708 EGR4Q05215 589 aa9.65□□□□□ -0.86
PTPN4-201ENST00000263708 CDCP2Q5VXM1 449 aa9.65□□□□□ -0.86
PTPN4-201ENST00000263708 PUSL1Q8N0Z8 303 aaKnown RBP9.65□□□□□ -0.86
PTPN4-201ENST00000263708 METRNQ9UJH8 293 aa9.65□□□□□ -0.86
PTPN4-201ENST00000263708 SCO2A0A1W2PP80 73 aa9.65□□□□□ -0.86
PTPN4-201ENST00000263708 LHBP01229 141 aa9.65□□□□□ -0.86
PTPN4-201ENST00000263708 RND3P61587 244 aa9.65□□□□□ -0.86
PTPN4-201ENST00000263708 ANAPC10Q9UM13 185 aa9.65□□□□□ -0.86
PTPN4-201ENST00000263708 ZNF407Q9C0G0 2248 aa9.65□□□□□ -0.86
PTPN4-201ENST00000263708 CACNA1GO43497 2377 aa9.65□□□□□ -0.86
PTPN4-201ENST00000263708 ZNF98A6NK75 572 aa9.65□□□□□ -0.86
PTPN4-201ENST00000263708 NANOS3P60323 173 aaKnown RBP9.65□□□□□ -0.86
PTPN4-201ENST00000263708 HMGCLL1Q8TB92 370 aa9.65□□□□□ -0.86
PTPN4-201ENST00000263708 ZNF625Q96I27 306 aaPredicted RBP9.65□□□□□ -0.86
PTPN4-201ENST00000263708 MIXL1Q9H2W2 232 aa9.65□□□□□ -0.86
PTPN4-201ENST00000263708 LOC285556D6RIA3 1793 aa9.65□□□□□ -0.87
PTPN4-201ENST00000263708 ITGB1BP1O14713 200 aa9.65□□□□□ -0.87
PTPN4-201ENST00000263708 FBLN7Q53RD9 439 aa9.65□□□□□ -0.87
PTPN4-201ENST00000263708 HMGA2P52926 109 aa9.65□□□□□ -0.87
PTPN4-201ENST00000263708 DEFB104AQ8WTQ1 72 aa9.65□□□□□ -0.87
PTPN4-201ENST00000263708 IMMP2LQ96T52 175 aa9.65□□□□□ -0.87
PTPN4-201ENST00000263708 HS3ST3B1Q9Y662 390 aa9.65□□□□□ -0.87
PTPN4-201ENST00000263708 CGB3P0DN86 165 aa9.64□□□□□ -0.87
PTPN4-201ENST00000263708 ZP4Q12836 540 aa9.64□□□□□ -0.87
PTPN4-201ENST00000263708 TGIF1Q15583 401 aa9.64□□□□□ -0.87
PTPN4-201ENST00000263708 HIGD1CA8MV81 97 aa9.64□□□□□ -0.87
PTPN4-201ENST00000263708 KIAA0040Q15053 153 aa9.64□□□□□ -0.87
PTPN4-201ENST00000263708 PHF3Q92576 2039 aaKnown RBP9.64□□□□□ -0.87
PTPN4-201ENST00000263708 HEATR5AQ86XA9 2040 aa9.64□□□□□ -0.87
PTPN4-201ENST00000263708 A0A1W2PPC1 479 aa9.64□□□□□ -0.87
PTPN4-201ENST00000263708 SRSF1Q07955 248 aaKnown RBP eCLIP9.64□□□□□ -0.87
PTPN4-201ENST00000263708 DPM3Q9P2X0 92 aa9.64□□□□□ -0.87
PTPN4-201ENST00000263708 ELF5Q9UKW6 265 aaPredicted RBP9.64□□□□□ -0.87
PTPN4-201ENST00000263708 ALPK2Q86TB3 2170 aa9.64□□□□□ -0.87
PTPN4-201ENST00000263708 SIPA1L3O60292 1781 aaPredicted RBP9.64□□□□□ -0.87
PTPN4-201ENST00000263708 IGFBP2P18065 325 aa9.64□□□□□ -0.87
PTPN4-201ENST00000263708 RBMY1FQ15415 496 aaKnown RBP9.64□□□□□ -0.87
PTPN4-201ENST00000263708 PKIBQ9C010 78 aa9.64□□□□□ -0.87
PTPN4-201ENST00000263708 CNOT1A5YKK6 2376 aaKnown RBP9.64□□□□□ -0.87
PTPN4-201ENST00000263708 IGKV1D-16P01601 117 aa9.64□□□□□ -0.87
PTPN4-201ENST00000263708 SRXN1Q9BYN0 137 aa9.64□□□□□ -0.87
PTPN4-201ENST00000263708 EFEMP2O95967 443 aa9.64□□□□□ -0.87
PTPN4-201ENST00000263708 DRAM1Q8N682 238 aa9.64□□□□□ -0.87
PTPN4-201ENST00000263708 SMIM8Q96KF7 97 aa9.64□□□□□ -0.87
PTPN4-201ENST00000263708 LHX2P50458 406 aa9.63□□□□□ -0.87
PTPN4-201ENST00000263708 GGACTQ9BVM4 153 aa9.63□□□□□ -0.87
PTPN4-201ENST00000263708 PRSS22Q9GZN4 317 aa9.63□□□□□ -0.87
PTPN4-201ENST00000263708 MSGN1A6NI15 193 aa9.63□□□□□ -0.87
PTPN4-201ENST00000263708 MORN3Q6PF18 240 aaPredicted RBP9.63□□□□□ -0.87
PTPN4-201ENST00000263708 SMRP1Q8NCR6 262 aa9.63□□□□□ -0.87
PTPN4-201ENST00000263708 CA7P43166 264 aa9.63□□□□□ -0.87
PTPN4-201ENST00000263708 C1orf122Q6ZSJ8 110 aa9.63□□□□□ -0.87
PTPN4-201ENST00000263708 OR52E5Q8NH55 327 aa9.63□□□□□ -0.87
PTPN4-201ENST00000263708 ZIC4Q8N9L1 334 aa9.63□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 51.4 ms