RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 MIC13Q5XKP0 118 aa11.24□□□□□ -0.61
LDLR-201ENST00000252444 NECAP1Q8NC96 275 aa11.24□□□□□ -0.61
LDLR-201ENST00000252444 NOL4LQ96MY1 436 aaPredicted RBP11.24□□□□□ -0.61
LDLR-201ENST00000252444 OTORQ9NRC9 128 aa11.24□□□□□ -0.61
LDLR-201ENST00000252444 CACNA1CQ13936 2221 aa11.24□□□□□ -0.61
LDLR-201ENST00000252444 A0A1W2PPQ1 181 aa11.24□□□□□ -0.61
LDLR-201ENST00000252444 GCHFRP30047 84 aa11.24□□□□□ -0.61
LDLR-201ENST00000252444 LEPP41159 167 aa11.24□□□□□ -0.61
LDLR-201ENST00000252444 C5orf64Q2M2E5 130 aa11.24□□□□□ -0.61
LDLR-201ENST00000252444 FGF8P55075 233 aaPredicted RBP11.24□□□□□ -0.61
LDLR-201ENST00000252444 IGHV2-70P01814 119 aa11.23□□□□□ -0.61
LDLR-201ENST00000252444 SPTBP11277 2137 aa11.23□□□□□ -0.61
LDLR-201ENST00000252444 TRAV40A0A0B4J280 105 aa11.23□□□□□ -0.61
LDLR-201ENST00000252444 F8VVB4 439 aa11.23□□□□□ -0.61
LDLR-201ENST00000252444 F8VWA3 439 aa11.23□□□□□ -0.61
LDLR-201ENST00000252444 ZNHIT1O43257 154 aa11.23□□□□□ -0.61
LDLR-201ENST00000252444 FCGR2BP31994 310 aaPredicted RBP11.23□□□□□ -0.61
LDLR-201ENST00000252444 VN1R17PQ8TDU5 208 aa11.23□□□□□ -0.61
LDLR-201ENST00000252444 DUX5Q96PT3 197 aa11.23□□□□□ -0.61
LDLR-201ENST00000252444 JKAMPQ9P055 326 aa11.23□□□□□ -0.61
LDLR-201ENST00000252444 TMEM189A5PLL7 270 aa11.23□□□□□ -0.61
LDLR-201ENST00000252444 FGF16O43320 207 aa11.23□□□□□ -0.61
LDLR-201ENST00000252444 LYL1P12980 280 aa11.23□□□□□ -0.61
LDLR-201ENST00000252444 EIF4E3Q8N5X7 224 aaKnown RBP11.23□□□□□ -0.61
LDLR-201ENST00000252444 OR4B1Q8NGF8 309 aa11.23□□□□□ -0.61
LDLR-201ENST00000252444 Q5PR19 223 aa11.23□□□□□ -0.61
LDLR-201ENST00000252444 RAB24Q969Q5 203 aa11.23□□□□□ -0.61
LDLR-201ENST00000252444 IGHV1-69DA0A0B4J2H0 117 aa11.22□□□□□ -0.61
LDLR-201ENST00000252444 TEX50A0A1B0GTY4 177 aa11.22□□□□□ -0.61
LDLR-201ENST00000252444 IGHV1-69P01742 117 aa11.22□□□□□ -0.61
LDLR-201ENST00000252444 COL8A2P25067 703 aa11.22□□□□□ -0.61
LDLR-201ENST00000252444 DTX2Q86UW9 622 aa11.22□□□□□ -0.61
LDLR-201ENST00000252444 FAM210BQ96KR6 192 aa11.22□□□□□ -0.61
LDLR-201ENST00000252444 FAM3BP58499 235 aaPredicted RBP11.22□□□□□ -0.61
LDLR-201ENST00000252444 PUSL1Q8N0Z8 303 aaKnown RBP11.22□□□□□ -0.61
LDLR-201ENST00000252444 IL4P05112 153 aa11.22□□□□□ -0.61
LDLR-201ENST00000252444 CD81P60033 236 aa11.22□□□□□ -0.61
LDLR-201ENST00000252444 NMSQ5H8A3 153 aa11.22□□□□□ -0.61
LDLR-201ENST00000252444 RNF114Q9Y508 228 aa11.22□□□□□ -0.61
LDLR-201ENST00000252444 LOC102723971A0A1B0GUV8 181 aa11.22□□□□□ -0.61
LDLR-201ENST00000252444 OR2J3O76001 311 aa11.22□□□□□ -0.61
LDLR-201ENST00000252444 WDR83OSQ9Y284 106 aa11.22□□□□□ -0.61
LDLR-201ENST00000252444 TRGC1P0CF51 173 aa11.22□□□□□ -0.61
LDLR-201ENST00000252444 Q6ZR03 302 aa11.22□□□□□ -0.61
LDLR-201ENST00000252444 RSPO3Q9BXY4 272 aaPredicted RBP11.22□□□□□ -0.61
LDLR-201ENST00000252444 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP11.21□□□□□ -0.61
LDLR-201ENST00000252444 GGCTO75223 188 aaKnown RBP11.21□□□□□ -0.61
LDLR-201ENST00000252444 NDUFA6P56556 154 aa11.21□□□□□ -0.61
LDLR-201ENST00000252444 C2orf68Q2NKX9 166 aa11.21□□□□□ -0.61
LDLR-201ENST00000252444 MSGN1A6NI15 193 aa11.21□□□□□ -0.61
LDLR-201ENST00000252444 CCKARP32238 428 aa11.21□□□□□ -0.62
LDLR-201ENST00000252444 KLHDC1Q8N7A1 406 aa11.21□□□□□ -0.62
LDLR-201ENST00000252444 LINC00052Q96N35 136 aa11.21□□□□□ -0.62
LDLR-201ENST00000252444 RSG1Q9BU20 258 aa11.21□□□□□ -0.62
LDLR-201ENST00000252444 H3BQ15 152 aa11.21□□□□□ -0.62
LDLR-201ENST00000252444 NDUFS6O75380 124 aaKnown RBP11.21□□□□□ -0.62
LDLR-201ENST00000252444 ANOS1P23352 680 aa11.21□□□□□ -0.62
LDLR-201ENST00000252444 C1orf147Q96MC9 270 aaPredicted RBP11.21□□□□□ -0.62
LDLR-201ENST00000252444 BPESC1Q9GZL8 116 aa11.21□□□□□ -0.62
LDLR-201ENST00000252444 NAT8BQ9UHF3 227 aa11.21□□□□□ -0.62
LDLR-201ENST00000252444 ZNF439Q8NDP4 499 aa11.2□□□□□ -0.62
LDLR-201ENST00000252444 A0A1B0GW64 132 aa11.2□□□□□ -0.62
LDLR-201ENST00000252444 OR4C46A6NHA9 309 aa11.2□□□□□ -0.62
LDLR-201ENST00000252444 SEC14L6B5MCN3 397 aa11.2□□□□□ -0.62
LDLR-201ENST00000252444 LINC00305Q7Z4B0 112 aa11.2□□□□□ -0.62
LDLR-201ENST00000252444 PCNPQ8WW12 178 aaKnown RBP11.2□□□□□ -0.62
LDLR-201ENST00000252444 PSMB11A5LHX3 300 aa11.2□□□□□ -0.62
LDLR-201ENST00000252444 OVOL1O14753 267 aa11.2□□□□□ -0.62
LDLR-201ENST00000252444 CYB561D1Q8N8Q1 229 aa11.2□□□□□ -0.62
LDLR-201ENST00000252444 A0A1W2PRE2 83 aa11.2□□□□□ -0.62
LDLR-201ENST00000252444 PGPA6NDG6 321 aa11.2□□□□□ -0.62
LDLR-201ENST00000252444 NMBP08949 121 aa11.2□□□□□ -0.62
LDLR-201ENST00000252444 SUMO1P63165 101 aaKnown RBP11.2□□□□□ -0.62
LDLR-201ENST00000252444 POU2AF1Q16633 256 aa11.2□□□□□ -0.62
LDLR-201ENST00000252444 FAM110DQ8TAY7 271 aaPredicted RBP11.2□□□□□ -0.62
LDLR-201ENST00000252444 ASXL3Q9C0F0 2248 aa11.19□□□□□ -0.62
LDLR-201ENST00000252444 HLA-DRB1P01911 266 aa11.19□□□□□ -0.62
LDLR-201ENST00000252444 SMUG1Q53HV7 270 aa11.19□□□□□ -0.62
LDLR-201ENST00000252444 LYPD1Q8N2G4 141 aa11.19□□□□□ -0.62
LDLR-201ENST00000252444 ITLN2Q8WWU7 325 aaPredicted RBP11.19□□□□□ -0.62
LDLR-201ENST00000252444 DDB2Q92466 427 aa11.19□□□□□ -0.62
LDLR-201ENST00000252444 F11RQ9Y624 299 aaKnown RBP11.19□□□□□ -0.62
LDLR-201ENST00000252444 TRAV1-1A0A0B4J248 108 aa11.19□□□□□ -0.62
LDLR-201ENST00000252444 SCGB1D1O95968 90 aa11.19□□□□□ -0.62
LDLR-201ENST00000252444 LHBP01229 141 aa11.19□□□□□ -0.62
LDLR-201ENST00000252444 ARL14EPLP0DKL9 152 aa11.19□□□□□ -0.62
LDLR-201ENST00000252444 RSPO1Q2MKA7 263 aaPredicted RBP11.19□□□□□ -0.62
LDLR-201ENST00000252444 LEMD1Q68G75 181 aa11.19□□□□□ -0.62
LDLR-201ENST00000252444 HLA-DQA1P01909 254 aa11.19□□□□□ -0.62
LDLR-201ENST00000252444 HSBP1O75506 76 aa11.19□□□□□ -0.62
LDLR-201ENST00000252444 AWAT1Q58HT5 328 aa11.19□□□□□ -0.62
LDLR-201ENST00000252444 TEX38Q6PEX7 206 aa11.19□□□□□ -0.62
LDLR-201ENST00000252444 CIARTQ8N365 385 aaPredicted RBP11.19□□□□□ -0.62
LDLR-201ENST00000252444 ADORA2A-AS1P86434 159 aa11.18□□□□□ -0.62
LDLR-201ENST00000252444 TMEM14EPQ6UXP3 125 aa11.18□□□□□ -0.62
LDLR-201ENST00000252444 C8orf46Q8TAG6 207 aa11.18□□□□□ -0.62
LDLR-201ENST00000252444 RPRMQ9NS64 109 aa11.18□□□□□ -0.62
LDLR-201ENST00000252444 A0A1B0GWJ7 208 aa11.18□□□□□ -0.62
LDLR-201ENST00000252444 FCN1O00602 326 aa11.18□□□□□ -0.62
LDLR-201ENST00000252444 LOXP28300 417 aaPredicted RBP11.18□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 58.2 ms