RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 FCER2P06734 321 aa12.77□□□□□ -0.37
CLN3-216ENST00000565316 WT1-ASQ06250 92 aa12.77□□□□□ -0.37
CLN3-216ENST00000565316 ZNF585BQ52M93 769 aa12.77□□□□□ -0.37
CLN3-216ENST00000565316 AADACL3Q5VUY0 350 aa12.77□□□□□ -0.37
CLN3-216ENST00000565316 PLET1Q6UQ28 207 aa12.77□□□□□ -0.37
CLN3-216ENST00000565316 HSD17B13Q7Z5P4 300 aaPredicted RBP12.77□□□□□ -0.37
CLN3-216ENST00000565316 TMEM17Q86X19 198 aa12.77□□□□□ -0.37
CLN3-216ENST00000565316 TMEM190Q8WZ59 177 aa12.77□□□□□ -0.37
CLN3-216ENST00000565316 BORCS5Q969J3 196 aa12.77□□□□□ -0.37
CLN3-216ENST00000565316 C5orf66Q9H5L9 145 aa12.77□□□□□ -0.37
CLN3-216ENST00000565316 ANAPC10Q9UM13 185 aa12.77□□□□□ -0.37
CLN3-216ENST00000565316 TEX50A0A1B0GTY4 177 aa12.76□□□□□ -0.37
CLN3-216ENST00000565316 CYB5BO43169 146 aa12.76□□□□□ -0.37
CLN3-216ENST00000565316 TGOLN2O43493 480 aa12.76□□□□□ -0.37
CLN3-216ENST00000565316 SERPINE2P07093 398 aa12.76□□□□□ -0.37
CLN3-216ENST00000565316 TRAPPC2P0DI81 140 aa12.76□□□□□ -0.37
CLN3-216ENST00000565316 TRAPPC2BP0DI82 140 aa12.76□□□□□ -0.37
CLN3-216ENST00000565316 HERV-K104P61576 105 aa12.76□□□□□ -0.37
CLN3-216ENST00000565316 RBPMS2Q6ZRY4 209 aaKnown RBP12.76□□□□□ -0.37
CLN3-216ENST00000565316 OR2C3Q8N628 320 aa12.76□□□□□ -0.37
CLN3-216ENST00000565316 DMBX1Q8NFW5 382 aa12.76□□□□□ -0.37
CLN3-216ENST00000565316 OR1L6Q8NGR2 347 aa12.76□□□□□ -0.37
CLN3-216ENST00000565316 ATP6V0BQ99437 205 aa12.76□□□□□ -0.37
CLN3-216ENST00000565316 NDUFA4L2Q9NRX3 87 aa12.76□□□□□ -0.37
CLN3-216ENST00000565316 IGHV3-35A0A0C4DH35 117 aa12.75□□□□□ -0.37
CLN3-216ENST00000565316 OR13C7P0DN81 318 aa12.75□□□□□ -0.37
CLN3-216ENST00000565316 F2RP25116 425 aa12.75□□□□□ -0.37
CLN3-216ENST00000565316 OR1L8Q8NGR8 309 aa12.75□□□□□ -0.37
CLN3-216ENST00000565316 MOB3AQ96BX8 217 aa12.75□□□□□ -0.37
CLN3-216ENST00000565316 S100A16Q96FQ6 103 aaKnown RBP12.75□□□□□ -0.37
CLN3-216ENST00000565316 EHFQ9NZC4 300 aa12.75□□□□□ -0.37
CLN3-216ENST00000565316 MEIS3P1A6NDR6 274 aa12.74□□□□□ -0.37
CLN3-216ENST00000565316 MARCH11A6NNE9 402 aa12.74□□□□□ -0.37
CLN3-216ENST00000565316 TSPAN4O14817 238 aa12.74□□□□□ -0.37
CLN3-216ENST00000565316 PGLYRP1O75594 196 aaPredicted RBP12.74□□□□□ -0.37
CLN3-216ENST00000565316 NAT1P18440 290 aa12.74□□□□□ -0.37
CLN3-216ENST00000565316 RFX2P48378 723 aa12.74□□□□□ -0.37
CLN3-216ENST00000565316 MFAP2P55001 183 aa12.74□□□□□ -0.37
CLN3-216ENST00000565316 NEDD8Q15843 81 aa12.74□□□□□ -0.37
CLN3-216ENST00000565316 WFDC3Q8IUB2 231 aa12.74□□□□□ -0.37
CLN3-216ENST00000565316 CROCCP3Q8IVE0 287 aa12.74□□□□□ -0.37
CLN3-216ENST00000565316 SLC38A6Q8IZM9 456 aa12.74□□□□□ -0.37
CLN3-216ENST00000565316 BSCL2Q96G97 398 aaPredicted RBP12.74□□□□□ -0.37
CLN3-216ENST00000565316 SPAG8Q99932 426 aaPredicted RBP12.74□□□□□ -0.37
CLN3-216ENST00000565316 IFT46Q9NQC8 304 aa12.74□□□□□ -0.37
CLN3-216ENST00000565316 F11RQ9Y624 299 aaKnown RBP12.74□□□□□ -0.37
CLN3-216ENST00000565316 OR2T8A6NH00 312 aa12.73□□□□□ -0.37
CLN3-216ENST00000565316 RLN1P04808 185 aa12.73□□□□□ -0.37
CLN3-216ENST00000565316 RPA2P15927 270 aa12.73□□□□□ -0.37
CLN3-216ENST00000565316 ERVK-16P61578 105 aa12.73□□□□□ -0.37
CLN3-216ENST00000565316 KCTD21Q4G0X4 260 aa12.73□□□□□ -0.37
CLN3-216ENST00000565316 UBE2NLQ5JXB2 153 aa12.73□□□□□ -0.37
CLN3-216ENST00000565316 SLC25A24Q6NUK1 477 aa12.73□□□□□ -0.37
CLN3-216ENST00000565316 SPSB3Q6PJ21 355 aa12.73□□□□□ -0.37
CLN3-216ENST00000565316 LSM10Q969L4 123 aaKnown RBP12.73□□□□□ -0.37
CLN3-216ENST00000565316 DGCR14Q96DF8 476 aaKnown RBP12.73□□□□□ -0.37
CLN3-216ENST00000565316 ZNF2Q9BSG1 426 aaPredicted RBP12.73□□□□□ -0.37
CLN3-216ENST00000565316 DAZ1Q9NQZ3 744 aaKnown RBP12.73□□□□□ -0.37
CLN3-216ENST00000565316 TP53TG1Q9Y2A0 90 aa12.73□□□□□ -0.37
CLN3-216ENST00000565316 F8W735 103 aaPredicted RBP12.72□□□□□ -0.37
CLN3-216ENST00000565316 NDUFA4O00483 81 aa12.72□□□□□ -0.37
CLN3-216ENST00000565316 LPAR6P43657 344 aa12.72□□□□□ -0.37
CLN3-216ENST00000565316 Q6ZWC4 215 aa12.72□□□□□ -0.37
CLN3-216ENST00000565316 FCAMRQ8WWV6 532 aa12.72□□□□□ -0.37
CLN3-216ENST00000565316 CHRDL1Q9BU40 450 aa12.72□□□□□ -0.37
CLN3-216ENST00000565316 C21orf62Q9NYP8 219 aa12.72□□□□□ -0.37
CLN3-216ENST00000565316 K7EIM0 57 aa12.71□□□□□ -0.37
CLN3-216ENST00000565316 K7EMT4 169 aa12.71□□□□□ -0.37
CLN3-216ENST00000565316 KRASP01116 189 aa12.71□□□□□ -0.37
CLN3-216ENST00000565316 PMP2P02689 132 aa12.71□□□□□ -0.37
CLN3-216ENST00000565316 ADMP35318 185 aa12.71□□□□□ -0.37
CLN3-216ENST00000565316 TGFBR1P36897 503 aa12.71□□□□□ -0.37
CLN3-216ENST00000565316 RPS19P39019 145 aaKnown RBP12.71□□□□□ -0.37
CLN3-216ENST00000565316 TAS2R46P59540 309 aa12.71□□□□□ -0.37
CLN3-216ENST00000565316 TAS2R20P59543 309 aa12.71□□□□□ -0.37
CLN3-216ENST00000565316 TNFRSF9Q07011 255 aa12.71□□□□□ -0.37
CLN3-216ENST00000565316 LAMTOR1Q6IAA8 161 aa12.71□□□□□ -0.37
CLN3-216ENST00000565316 CMTM1Q8IZ96 169 aa12.71□□□□□ -0.37
CLN3-216ENST00000565316 SCARB1Q8WTV0 552 aa12.71□□□□□ -0.37
CLN3-216ENST00000565316 OR51B2Q9Y5P1 312 aa12.71□□□□□ -0.37
CLN3-216ENST00000565316 GPR31O00270 319 aa12.7□□□□□ -0.38
CLN3-216ENST00000565316 UBE2CO00762 179 aa12.7□□□□□ -0.38
CLN3-216ENST00000565316 APOC4P55056 127 aa12.7□□□□□ -0.38
CLN3-216ENST00000565316 ODF3L2Q3SX64 289 aa12.7□□□□□ -0.38
CLN3-216ENST00000565316 TMEM69Q5SWH9 247 aa12.7□□□□□ -0.38
CLN3-216ENST00000565316 LYSMD2Q8IV50 215 aa12.7□□□□□ -0.38
CLN3-216ENST00000565316 SAMD12Q8N8I0 201 aa12.7□□□□□ -0.38
CLN3-216ENST00000565316 OR5H2Q8NGV7 314 aa12.7□□□□□ -0.38
CLN3-216ENST00000565316 OR5B3Q8NH48 314 aa12.7□□□□□ -0.38
CLN3-216ENST00000565316 ZNF414Q96IQ9 312 aa12.7□□□□□ -0.38
CLN3-216ENST00000565316 HINT2Q9BX68 163 aa12.7□□□□□ -0.38
CLN3-216ENST00000565316 FXYD6Q9H0Q3 95 aa12.7□□□□□ -0.38
CLN3-216ENST00000565316 FAM212BQ9NTI7 297 aaPredicted RBP12.7□□□□□ -0.38
CLN3-216ENST00000565316 TMEM14BQ9NUH8 114 aa12.7□□□□□ -0.38
CLN3-216ENST00000565316 PRNDQ9UKY0 176 aa12.7□□□□□ -0.38
CLN3-216ENST00000565316 NSG2Q9Y328 171 aa12.7□□□□□ -0.38
CLN3-216ENST00000565316 IGHV3-21A0A0B4J1V1 117 aa12.69□□□□□ -0.38
CLN3-216ENST00000565316 KIR2DL5BA0A0G2JN68 375 aa12.69□□□□□ -0.38
CLN3-216ENST00000565316 KIR2DL5BA0A0G2JPC4 375 aa12.69□□□□□ -0.38
CLN3-216ENST00000565316 SPRY2O43597 315 aa12.69□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms