RNA–Protein interactions for RNA: ENST00000553128.5

VPS29-211, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 449 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-211ENST00000553128 IFNA10P01566 189 aa9.27□□□□□ -0.93
VPS29-211ENST00000553128 HLA-DQB1P01920 261 aa9.27□□□□□ -0.93
VPS29-211ENST00000553128 CD36P16671 472 aa9.27□□□□□ -0.93
VPS29-211ENST00000553128 CMC4P56277 68 aaPredicted RBP9.27□□□□□ -0.93
VPS29-211ENST00000553128 RAB11BQ15907 218 aa9.27□□□□□ -0.93
VPS29-211ENST00000553128 TIMM50Q3ZCQ8 353 aa9.27□□□□□ -0.93
VPS29-211ENST00000553128 C1orf134Q5TEV5 83 aa9.27□□□□□ -0.93
VPS29-211ENST00000553128 LAIR2Q6ISS4 152 aa9.27□□□□□ -0.93
VPS29-211ENST00000553128 LILRB2Q8N423 598 aa9.27□□□□□ -0.93
VPS29-211ENST00000553128 NANOGP1Q8N7R0 232 aa9.27□□□□□ -0.93
VPS29-211ENST00000553128 UBAC2Q8NBM4 344 aa9.27□□□□□ -0.93
VPS29-211ENST00000553128 SCARB1Q8WTV0 552 aa9.27□□□□□ -0.93
VPS29-211ENST00000553128 FAM3DQ96BQ1 224 aa9.27□□□□□ -0.93
VPS29-211ENST00000553128 RAB3CQ96E17 227 aa9.27□□□□□ -0.93
VPS29-211ENST00000553128 CLEC5AQ9NY25 188 aa9.27□□□□□ -0.93
VPS29-211ENST00000553128 TAS2R8Q9NYW2 309 aa9.27□□□□□ -0.93
VPS29-211ENST00000553128 THYN1Q9P016 225 aa9.27□□□□□ -0.93
VPS29-211ENST00000553128 MFNGO00587 321 aa9.26□□□□□ -0.93
VPS29-211ENST00000553128 DENRO43583 198 aaKnown RBP9.26□□□□□ -0.93
VPS29-211ENST00000553128 CIB2O75838 187 aa9.26□□□□□ -0.93
VPS29-211ENST00000553128 CTSGP08311 255 aa9.26□□□□□ -0.93
VPS29-211ENST00000553128 WT1-ASQ06250 92 aa9.26□□□□□ -0.93
VPS29-211ENST00000553128 SLC25A24Q6NUK1 477 aa9.26□□□□□ -0.93
VPS29-211ENST00000553128 SPSB3Q6PJ21 355 aa9.26□□□□□ -0.93
VPS29-211ENST00000553128 MFSD4AQ8N468 514 aa9.26□□□□□ -0.93
VPS29-211ENST00000553128 MS4A15Q8N5U1 240 aa9.26□□□□□ -0.93
VPS29-211ENST00000553128 GDPD1Q8N9F7 314 aa9.26□□□□□ -0.93
VPS29-211ENST00000553128 ZNF555Q8NEP9 628 aa9.26□□□□□ -0.93
VPS29-211ENST00000553128 HRASLSQ9HDD0 168 aa9.26□□□□□ -0.93
VPS29-211ENST00000553128 BET1LQ9NYM9 111 aa9.26□□□□□ -0.93
VPS29-211ENST00000553128 C21orf62Q9NYP8 219 aa9.26□□□□□ -0.93
VPS29-211ENST00000553128 OR2W1Q9Y3N9 320 aa9.26□□□□□ -0.93
VPS29-211ENST00000553128 UBR4Q5T4S7 5183 aa9.26□□□□□ -0.93
VPS29-211ENST00000553128 K7EIM0 57 aa9.25□□□□□ -0.93
VPS29-211ENST00000553128 NUPL2O15504 423 aaKnown RBP9.25□□□□□ -0.93
VPS29-211ENST00000553128 HRASP01112 189 aa9.25□□□□□ -0.93
VPS29-211ENST00000553128 APOHP02749 345 aaPredicted RBP9.25□□□□□ -0.93
VPS29-211ENST00000553128 SOHLH1Q5JUK2 328 aa9.25□□□□□ -0.93
VPS29-211ENST00000553128 TCF24Q7RTU0 167 aa9.25□□□□□ -0.93
VPS29-211ENST00000553128 TRPT1Q86TN4 253 aaKnown RBP9.25□□□□□ -0.93
VPS29-211ENST00000553128 UBE2DNLQ8IWF7 75 aa9.25□□□□□ -0.93
VPS29-211ENST00000553128 STHQ8IWL8 128 aa9.25□□□□□ -0.93
VPS29-211ENST00000553128 CENPSQ8N2Z9 138 aa9.25□□□□□ -0.93
VPS29-211ENST00000553128 HSD17B10Q99714 261 aaKnown RBP9.25□□□□□ -0.93
VPS29-211ENST00000553128 MS4A6AQ9H2W1 248 aa9.25□□□□□ -0.93
VPS29-211ENST00000553128 AGRNO00468 2067 aa9.25□□□□□ -0.93
VPS29-211ENST00000553128 VPS13BQ7Z7G8 4022 aa9.24□□□□□ -0.93
VPS29-211ENST00000553128 DMBT1Q9UGM3 2413 aaPredicted RBP9.24□□□□□ -0.93
VPS29-211ENST00000553128 UPK2O00526 184 aa9.24□□□□□ -0.93
VPS29-211ENST00000553128 TNFSF12O43508 249 aa9.24□□□□□ -0.93
VPS29-211ENST00000553128 SERPINE2P07093 398 aa9.24□□□□□ -0.93
VPS29-211ENST00000553128 OR13C7P0DN81 318 aa9.24□□□□□ -0.93
VPS29-211ENST00000553128 HIST1H1DP16402 221 aaKnown RBP9.24□□□□□ -0.93
VPS29-211ENST00000553128 Q56UQ5 140 aa9.24□□□□□ -0.93
VPS29-211ENST00000553128 TMEM91Q6ZNR0 172 aa9.24□□□□□ -0.93
VPS29-211ENST00000553128 Q6ZS49 121 aa9.24□□□□□ -0.93
VPS29-211ENST00000553128 AHSA2Q719I0 299 aa9.24□□□□□ -0.93
VPS29-211ENST00000553128 CSNK1G2-AS1Q8NCQ2 148 aa9.24□□□□□ -0.93
VPS29-211ENST00000553128 OR10R2Q8NGX6 335 aa9.24□□□□□ -0.93
VPS29-211ENST00000553128 ST8SIA2Q92186 375 aa9.24□□□□□ -0.93
VPS29-211ENST00000553128 TMEM203Q969S6 136 aa9.24□□□□□ -0.93
VPS29-211ENST00000553128 OR10C1Q96KK4 312 aa9.24□□□□□ -0.93
VPS29-211ENST00000553128 QTRT1Q9BXR0 403 aaKnown RBP9.24□□□□□ -0.93
VPS29-211ENST00000553128 SMPD3Q9NY59 655 aaPredicted RBP9.24□□□□□ -0.93
VPS29-211ENST00000553128 PSORS1C1Q9UIG5 152 aa9.24□□□□□ -0.93
VPS29-211ENST00000553128 IGHV3-66A0A0C4DH42 116 aa9.23□□□□□ -0.93
VPS29-211ENST00000553128 KNCNA6PVL3 124 aa9.23□□□□□ -0.93
VPS29-211ENST00000553128 YIF1AO95070 293 aa9.23□□□□□ -0.93
VPS29-211ENST00000553128 IFNA21P01568 189 aa9.23□□□□□ -0.93
VPS29-211ENST00000553128 IFNA17P01571 189 aa9.23□□□□□ -0.93
VPS29-211ENST00000553128 HES5Q5TA89 166 aa9.23□□□□□ -0.93
VPS29-211ENST00000553128 ZNF773Q6PK81 442 aa9.23□□□□□ -0.93
VPS29-211ENST00000553128 CYGBQ8WWM9 190 aa9.23□□□□□ -0.93
VPS29-211ENST00000553128 CMTM3Q96MX0 182 aa9.23□□□□□ -0.93
VPS29-211ENST00000553128 RAB22AQ9UL26 194 aa9.23□□□□□ -0.93
VPS29-211ENST00000553128 TBC1D24Q9ULP9 559 aa9.23□□□□□ -0.93
VPS29-211ENST00000553128 TRAV14DV4A0A0A6YYC5 116 aa9.22□□□□□ -0.93
VPS29-211ENST00000553128 TEX50A0A1B0GTY4 177 aa9.22□□□□□ -0.93
VPS29-211ENST00000553128 DFFBO76075 338 aa9.22□□□□□ -0.93
VPS29-211ENST00000553128 PAFAH1B2P68402 229 aa9.22□□□□□ -0.93
VPS29-211ENST00000553128 ZFP1Q6P2D0 407 aa9.22□□□□□ -0.93
VPS29-211ENST00000553128 SPAG16Q8N0X2 631 aa9.22□□□□□ -0.93
VPS29-211ENST00000553128 DGCR14Q96DF8 476 aaKnown RBP9.22□□□□□ -0.93
VPS29-211ENST00000553128 SRSF8Q9BRL6 282 aaKnown RBP9.22□□□□□ -0.93
VPS29-211ENST00000553128 COMMD5Q9GZQ3 224 aa9.22□□□□□ -0.93
VPS29-211ENST00000553128 F11RQ9Y624 299 aaKnown RBP9.22□□□□□ -0.93
VPS29-211ENST00000553128 NACAE9PAV3 2078 aa9.22□□□□□ -0.93
VPS29-211ENST00000553128 DNASE2O00115 360 aaPredicted RBP9.21□□□□□ -0.94
VPS29-211ENST00000553128 SLC22A5O76082 557 aa9.21□□□□□ -0.94
VPS29-211ENST00000553128 TALDO1P37837 337 aa9.21□□□□□ -0.94
VPS29-211ENST00000553128 RASSF2P50749 326 aa9.21□□□□□ -0.94
VPS29-211ENST00000553128 LIPKQ5VXJ0 399 aa9.21□□□□□ -0.94
VPS29-211ENST00000553128 ZNF66Q6ZN08 573 aa9.21□□□□□ -0.94
VPS29-211ENST00000553128 ATP6V0BQ99437 205 aa9.21□□□□□ -0.94
VPS29-211ENST00000553128 VSIRQ9H7M9 311 aa9.21□□□□□ -0.94
VPS29-211ENST00000553128 CCL28Q9NRJ3 127 aa9.21□□□□□ -0.94
VPS29-211ENST00000553128 TMEM14BQ9NUH8 114 aa9.21□□□□□ -0.94
VPS29-211ENST00000553128 TMEM140Q9NV12 185 aa9.21□□□□□ -0.94
VPS29-211ENST00000553128 LSM2Q9Y333 95 aaKnown RBP9.21□□□□□ -0.94
VPS29-211ENST00000553128 SULT1C2O00338 296 aa9.2□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 82.5 ms