RNA–Protein interactions for RNA: ENST00000544967.5

USP28-213, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 3,498 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-213ENST00000544967 OSR2Q8N2R0 312 aa4.39□□□□□ -1.71
USP28-213ENST00000544967 OR10G7Q8NGN6 311 aa4.39□□□□□ -1.71
USP28-213ENST00000544967 LYZL4Q96KX0 146 aa4.39□□□□□ -1.71
USP28-213ENST00000544967 OSTCQ9NRP0 149 aa4.39□□□□□ -1.71
USP28-213ENST00000544967 ANKRD11Q6UB99 2663 aaPredicted RBP4.39□□□□□ -1.71
USP28-213ENST00000544967 PHF3Q92576 2039 aaKnown RBP4.39□□□□□ -1.71
USP28-213ENST00000544967 ATRXP46100 2492 aa4.39□□□□□ -1.71
USP28-213ENST00000544967 TPRP12270 2363 aaKnown RBP4.39□□□□□ -1.71
USP28-213ENST00000544967 TRBV7-9A0A0J9YWB2 115 aa4.39□□□□□ -1.71
USP28-213ENST00000544967 GNB1P62873 340 aa4.39□□□□□ -1.71
USP28-213ENST00000544967 SLC38A11Q08AI6 406 aa4.39□□□□□ -1.71
USP28-213ENST00000544967 RPEL1Q2QD12 228 aa4.39□□□□□ -1.71
USP28-213ENST00000544967 C5orf47Q569G3 176 aa4.39□□□□□ -1.71
USP28-213ENST00000544967 FAM69BQ5VUD6 431 aa4.39□□□□□ -1.71
USP28-213ENST00000544967 NEGR1Q7Z3B1 354 aa4.39□□□□□ -1.71
USP28-213ENST00000544967 GJC3Q8NFK1 279 aa4.39□□□□□ -1.71
USP28-213ENST00000544967 OR5A1Q8NGJ0 315 aa4.39□□□□□ -1.71
USP28-213ENST00000544967 PIGTQ969N2 578 aa4.39□□□□□ -1.71
USP28-213ENST00000544967 BORCS7Q96B45 105 aa4.39□□□□□ -1.71
USP28-213ENST00000544967 ZNF524Q96C55 264 aa4.39□□□□□ -1.71
USP28-213ENST00000544967 BBC3Q96PG8 261 aaPredicted RBP4.39□□□□□ -1.71
USP28-213ENST00000544967 OR4C12Q96R67 309 aa4.39□□□□□ -1.71
USP28-213ENST00000544967 QTRT1Q9BXR0 403 aaKnown RBP4.39□□□□□ -1.71
USP28-213ENST00000544967 IGKV1D-43A0A0B4J1Z2 117 aa4.38□□□□□ -1.71
USP28-213ENST00000544967 CGB1A6NKQ9 187 aa4.38□□□□□ -1.71
USP28-213ENST00000544967 K7EM74 188 aa4.38□□□□□ -1.71
USP28-213ENST00000544967 CA2P00918 260 aa4.38□□□□□ -1.71
USP28-213ENST00000544967 CELA2AP08217 269 aa4.38□□□□□ -1.71
USP28-213ENST00000544967 NPPCP23582 126 aa4.38□□□□□ -1.71
USP28-213ENST00000544967 GDF1P27539 372 aa4.38□□□□□ -1.71
USP28-213ENST00000544967 FOXL2P58012 376 aa4.38□□□□□ -1.71
USP28-213ENST00000544967 FXYD4P59646 89 aa4.38□□□□□ -1.71
USP28-213ENST00000544967 TGFBR3Q03167 851 aa4.38□□□□□ -1.71
USP28-213ENST00000544967 ZNF90Q03938 601 aa4.38□□□□□ -1.71
USP28-213ENST00000544967 DEFB109BQ30KR1 87 aa4.38□□□□□ -1.71
USP28-213ENST00000544967 BVES-AS1Q5T3Y7 98 aa4.38□□□□□ -1.71
USP28-213ENST00000544967 TSPO2Q5TGU0 170 aa4.38□□□□□ -1.71
USP28-213ENST00000544967 OR4A47Q6IF82 309 aa4.38□□□□□ -1.71
USP28-213ENST00000544967 ZNF843Q8N446 348 aa4.38□□□□□ -1.71
USP28-213ENST00000544967 ABHD3Q8WU67 409 aa4.38□□□□□ -1.71
USP28-213ENST00000544967 ULBP2Q9BZM5 246 aa4.38□□□□□ -1.71
USP28-213ENST00000544967 GNB4Q9HAV0 340 aa4.38□□□□□ -1.71
USP28-213ENST00000544967 COPS7AQ9UBW8 275 aa4.38□□□□□ -1.71
USP28-213ENST00000544967 SPTBP11277 2137 aa4.38□□□□□ -1.71
USP28-213ENST00000544967 TRAV17A0A0B4J275 112 aa4.38□□□□□ -1.71
USP28-213ENST00000544967 GAGE12BA1L429 117 aa4.38□□□□□ -1.71
USP28-213ENST00000544967 TMEM189A5PLL7 270 aa4.38□□□□□ -1.71
USP28-213ENST00000544967 SLC22A20A6NK97 555 aa4.38□□□□□ -1.71
USP28-213ENST00000544967 M0R1X1 148 aa4.38□□□□□ -1.71
USP28-213ENST00000544967 PGLYRP1O75594 196 aaPredicted RBP4.38□□□□□ -1.71
USP28-213ENST00000544967 IGKV1D-33P01593 117 aa4.38□□□□□ -1.71
USP28-213ENST00000544967 IGKV1-33P01594 117 aa4.38□□□□□ -1.71
USP28-213ENST00000544967 AMY1AP04745 511 aa4.38□□□□□ -1.71
USP28-213ENST00000544967 SP1P08047 785 aa4.38□□□□□ -1.71
USP28-213ENST00000544967 PMCHP20382 165 aa4.38□□□□□ -1.71
USP28-213ENST00000544967 AMTP48728 403 aa4.38□□□□□ -1.71
USP28-213ENST00000544967 CAMPP49913 170 aa4.38□□□□□ -1.71
USP28-213ENST00000544967 SSR4P51571 173 aa4.38□□□□□ -1.71
USP28-213ENST00000544967 FUT6P51993 359 aa4.38□□□□□ -1.71
USP28-213ENST00000544967 RBM11P57052 281 aaKnown RBP4.38□□□□□ -1.71
USP28-213ENST00000544967 KRTDAPP60985 99 aa4.38□□□□□ -1.71
USP28-213ENST00000544967 HIST1H1AQ02539 215 aaPredicted RBP4.38□□□□□ -1.71
USP28-213ENST00000544967 DGAT2L7PQ6IED9 249 aa4.38□□□□□ -1.71
USP28-213ENST00000544967 ACSM6Q6P461 480 aa4.38□□□□□ -1.71
USP28-213ENST00000544967 RNASEKQ6P5S7 137 aaKnown RBP4.38□□□□□ -1.71
USP28-213ENST00000544967 FAM180AQ6UWF9 173 aa4.38□□□□□ -1.71
USP28-213ENST00000544967 RPS19BP1Q86WX3 136 aaKnown RBP4.38□□□□□ -1.71
USP28-213ENST00000544967 ST6GALNAC3Q8NDV1 305 aa4.38□□□□□ -1.71
USP28-213ENST00000544967 SPACA5Q96QH8 159 aa4.38□□□□□ -1.71
USP28-213ENST00000544967 HDHD3Q9BSH5 251 aaPredicted RBP4.38□□□□□ -1.71
USP28-213ENST00000544967 MCRIP2Q9BUT9 160 aaKnown RBP4.38□□□□□ -1.71
USP28-213ENST00000544967 NXF5Q9H1B4 397 aaKnown RBP4.38□□□□□ -1.71
USP28-213ENST00000544967 HEYLQ9NQ87 328 aaPredicted RBP4.38□□□□□ -1.71
USP28-213ENST00000544967 MED13Q9UHV7 2174 aa4.38□□□□□ -1.71
USP28-213ENST00000544967 TNFSF11O14788 317 aa4.38□□□□□ -1.71
USP28-213ENST00000544967 PAGE4O60829 102 aa4.38□□□□□ -1.71
USP28-213ENST00000544967 OR2J3O76001 311 aa4.38□□□□□ -1.71
USP28-213ENST00000544967 CRYBB3P26998 211 aa4.38□□□□□ -1.71
USP28-213ENST00000544967 CRYBA4P53673 196 aa4.38□□□□□ -1.71
USP28-213ENST00000544967 B3GALT5-AS1P59052 145 aa4.38□□□□□ -1.71
USP28-213ENST00000544967 GUSBP1Q15486 140 aa4.38□□□□□ -1.71
USP28-213ENST00000544967 TCTEX1D4Q5JR98 221 aa4.38□□□□□ -1.71
USP28-213ENST00000544967 ZNF818PQ6ZRF7 136 aa4.38□□□□□ -1.71
USP28-213ENST00000544967 TMEM136Q6ZRR5 245 aa4.38□□□□□ -1.71
USP28-213ENST00000544967 WDR31Q8NA23 367 aa4.38□□□□□ -1.71
USP28-213ENST00000544967 FER1L6-AS1Q8NA97 138 aa4.38□□□□□ -1.71
USP28-213ENST00000544967 DYRK2Q92630 601 aa4.38□□□□□ -1.71
USP28-213ENST00000544967 RBM24Q9BX46 236 aaKnown RBP4.38□□□□□ -1.71
USP28-213ENST00000544967 COMMD5Q9GZQ3 224 aa4.38□□□□□ -1.71
USP28-213ENST00000544967 LIN7CQ9NUP9 197 aaKnown RBP4.38□□□□□ -1.71
USP28-213ENST00000544967 KLF13Q9Y2Y9 288 aaPredicted RBP4.38□□□□□ -1.71
USP28-213ENST00000544967 MPDZO75970 2070 aa4.38□□□□□ -1.71
USP28-213ENST00000544967 SH2D7A6NKC9 451 aaPredicted RBP4.37□□□□□ -1.71
USP28-213ENST00000544967 CD300LBA8K4G0 201 aa4.37□□□□□ -1.71
USP28-213ENST00000544967 PMS2P5A8MQ11 134 aa4.37□□□□□ -1.71
USP28-213ENST00000544967 M0QZ24 198 aa4.37□□□□□ -1.71
USP28-213ENST00000544967 FCN1O00602 326 aa4.37□□□□□ -1.71
USP28-213ENST00000544967 OR7C2O60412 319 aa4.37□□□□□ -1.71
USP28-213ENST00000544967 TRAPPC6AO75865 159 aa4.37□□□□□ -1.71
USP28-213ENST00000544967 THBDP07204 575 aa4.37□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 72 ms