RNA–Protein interactions for RNA: ENST00000543140.5

COL4A1-204, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A1, Length 2,547 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-204ENST00000543140 MOB3BQ86TA1 216 aa13.27□□□□□ -0.29
COL4A1-204ENST00000543140 OSR1Q8TAX0 266 aaPredicted RBP13.27□□□□□ -0.29
COL4A1-204ENST00000543140 C12orf57Q99622 126 aa13.27□□□□□ -0.29
COL4A1-204ENST00000543140 ZNF257Q9Y2Q1 563 aa13.27□□□□□ -0.29
COL4A1-204ENST00000543140 WDR25Q64LD2 544 aaPredicted RBP13.26□□□□□ -0.29
COL4A1-204ENST00000543140 C11orf42Q8N5U0 333 aa13.26□□□□□ -0.29
COL4A1-204ENST00000543140 SMIM7Q9BQ49 75 aa13.26□□□□□ -0.29
COL4A1-204ENST00000543140 BET1LQ9NYM9 111 aa13.26□□□□□ -0.29
COL4A1-204ENST00000543140 NAV3Q8IVL0 2385 aa13.26□□□□□ -0.29
COL4A1-204ENST00000543140 HIVEP3Q5T1R4 2406 aa13.26□□□□□ -0.29
COL4A1-204ENST00000543140 UBE2G2P60604 165 aa13.26□□□□□ -0.29
COL4A1-204ENST00000543140 PMS2P11Q13670 270 aa13.26□□□□□ -0.29
COL4A1-204ENST00000543140 RNF212Q495C1 297 aa13.26□□□□□ -0.29
COL4A1-204ENST00000543140 TEPPQ6URK8 271 aa13.26□□□□□ -0.29
COL4A1-204ENST00000543140 YPEL4Q96NS1 127 aa13.26□□□□□ -0.29
COL4A1-204ENST00000543140 NABP2Q9BQ15 211 aa13.26□□□□□ -0.29
COL4A1-204ENST00000543140 LSM4Q9Y4Z0 139 aaKnown RBP13.26□□□□□ -0.29
COL4A1-204ENST00000543140 A0A087WWC5 75 aa13.25□□□□□ -0.29
COL4A1-204ENST00000543140 IGHV3-72A0A0B4J1Y9 119 aa13.25□□□□□ -0.29
COL4A1-204ENST00000543140 OR9G1Q8NH87 305 aa13.25□□□□□ -0.29
COL4A1-204ENST00000543140 ST6GALNAC6Q969X2 333 aa13.25□□□□□ -0.29
COL4A1-204ENST00000543140 TMEM186Q96B77 213 aa13.25□□□□□ -0.29
COL4A1-204ENST00000543140 SDF2L1Q9HCN8 221 aa13.25□□□□□ -0.29
COL4A1-204ENST00000543140 BIN3Q9NQY0 253 aa13.25□□□□□ -0.29
COL4A1-204ENST00000543140 RALYQ9UKM9 306 aaKnown RBP13.25□□□□□ -0.29
COL4A1-204ENST00000543140 ARHGAP32A7KAX9 2087 aa13.25□□□□□ -0.29
COL4A1-204ENST00000543140 ITPR1Q14643 2758 aa13.25□□□□□ -0.29
COL4A1-204ENST00000543140 SEC14L6B5MCN3 397 aa13.24□□□□□ -0.29
COL4A1-204ENST00000543140 E7EUB6 86 aa13.24□□□□□ -0.29
COL4A1-204ENST00000543140 MLANAQ16655 118 aa13.24□□□□□ -0.29
COL4A1-204ENST00000543140 COMMD5Q9GZQ3 224 aa13.24□□□□□ -0.29
COL4A1-204ENST00000543140 MANBALQ9NQG1 85 aa13.24□□□□□ -0.29
COL4A1-204ENST00000543140 B2MP61769 119 aa13.24□□□□□ -0.29
COL4A1-204ENST00000543140 TMEM177Q53S58 311 aa13.24□□□□□ -0.29
COL4A1-204ENST00000543140 TGIF2LXQ8IUE1 241 aa13.24□□□□□ -0.29
COL4A1-204ENST00000543140 OR4C13Q8NGP0 309 aa13.24□□□□□ -0.29
COL4A1-204ENST00000543140 Q8WTZ3 238 aa13.24□□□□□ -0.29
COL4A1-204ENST00000543140 RITA1Q96K30 269 aa13.24□□□□□ -0.29
COL4A1-204ENST00000543140 IGFBP2P18065 325 aa13.23□□□□□ -0.29
COL4A1-204ENST00000543140 RPL8P62917 257 aaKnown RBP13.23□□□□□ -0.29
COL4A1-204ENST00000543140 ELOBQ15370 118 aa13.23□□□□□ -0.29
COL4A1-204ENST00000543140 STPG3Q8N7X2 389 aa13.23□□□□□ -0.29
COL4A1-204ENST00000543140 ABHD5Q8WTS1 349 aa13.23□□□□□ -0.29
COL4A1-204ENST00000543140 TMEM133Q9H2Q1 129 aa13.23□□□□□ -0.29
COL4A1-204ENST00000543140 FKBP11Q9NYL4 201 aa13.23□□□□□ -0.29
COL4A1-204ENST00000543140 KLF2Q9Y5W3 355 aaPredicted RBP13.23□□□□□ -0.29
COL4A1-204ENST00000543140 ENSAO43768 121 aaKnown RBP13.23□□□□□ -0.29
COL4A1-204ENST00000543140 CXCL1P09341 107 aa13.23□□□□□ -0.29
COL4A1-204ENST00000543140 ARL14EPLP0DKL9 152 aa13.23□□□□□ -0.29
COL4A1-204ENST00000543140 AGAP20933 346 aa13.23□□□□□ -0.29
COL4A1-204ENST00000543140 SNRPEP62304 92 aaKnown RBP13.23□□□□□ -0.29
COL4A1-204ENST00000543140 ADIRFQ15847 76 aa13.23□□□□□ -0.29
COL4A1-204ENST00000543140 C10orf55Q5SWW7 151 aa13.23□□□□□ -0.29
COL4A1-204ENST00000543140 CST9LP1Q5W188 147 aa13.23□□□□□ -0.29
COL4A1-204ENST00000543140 LINC00311Q8N616 119 aa13.23□□□□□ -0.29
COL4A1-204ENST00000543140 OR5B3Q8NH48 314 aa13.23□□□□□ -0.29
COL4A1-204ENST00000543140 TGIF2-C20orf24A0A0A6YYL0 155 aa13.22□□□□□ -0.29
COL4A1-204ENST00000543140 C11orf94C9JXX5 98 aa13.22□□□□□ -0.29
COL4A1-204ENST00000543140 RPS10P46783 165 aaKnown RBP13.22□□□□□ -0.29
COL4A1-204ENST00000543140 PNRC1Q12796 327 aaPredicted RBP13.22□□□□□ -0.29
COL4A1-204ENST00000543140 KIAA0141Q14154 515 aaPredicted RBP13.22□□□□□ -0.29
COL4A1-204ENST00000543140 ZNF841Q6ZN19 808 aa13.22□□□□□ -0.29
COL4A1-204ENST00000543140 ZNF596Q8TC21 504 aa13.22□□□□□ -0.29
COL4A1-204ENST00000543140 PARLQ9H300 379 aa13.22□□□□□ -0.29
COL4A1-204ENST00000543140 WASHC3Q9Y3C0 194 aa13.22□□□□□ -0.29
COL4A1-204ENST00000543140 B4DEV8 164 aa13.22□□□□□ -0.29
COL4A1-204ENST00000543140 PDPNQ86YL7 162 aa13.22□□□□□ -0.29
COL4A1-204ENST00000543140 OR51G1Q8NGK1 321 aa13.22□□□□□ -0.29
COL4A1-204ENST00000543140 SSX3Q99909 188 aa13.22□□□□□ -0.29
COL4A1-204ENST00000543140 SEPSECSQ9HD40 501 aaKnown RBP13.22□□□□□ -0.29
COL4A1-204ENST00000543140 A0A087X0M5 115 aa13.21□□□□□ -0.29
COL4A1-204ENST00000543140 A0A1B0GX30 115 aa13.21□□□□□ -0.29
COL4A1-204ENST00000543140 SOX15O60248 233 aa13.21□□□□□ -0.29
COL4A1-204ENST00000543140 IGHV2-70P01814 119 aa13.21□□□□□ -0.29
COL4A1-204ENST00000543140 RAB31Q13636 194 aa13.21□□□□□ -0.29
COL4A1-204ENST00000543140 TMEM241Q24JQ0 296 aa13.21□□□□□ -0.29
COL4A1-204ENST00000543140 SPATA31B1PQ5VZV4 182 aa13.21□□□□□ -0.29
COL4A1-204ENST00000543140 C8orf31Q8N9H6 132 aa13.21□□□□□ -0.29
COL4A1-204ENST00000543140 TMEM204Q9BSN7 226 aa13.21□□□□□ -0.29
COL4A1-204ENST00000543140 TPSG1Q9NRR2 321 aa13.21□□□□□ -0.29
COL4A1-204ENST00000543140 NDUFA4L2Q9NRX3 87 aa13.21□□□□□ -0.29
COL4A1-204ENST00000543140 NAT8Q9UHE5 227 aa13.21□□□□□ -0.29
COL4A1-204ENST00000543140 TRBV23-1A0A0A0MS06 115 aa13.21□□□□□ -0.29
COL4A1-204ENST00000543140 TMEM250H0YL14 139 aa13.21□□□□□ -0.29
COL4A1-204ENST00000543140 SLC25A17O43808 307 aa13.21□□□□□ -0.29
COL4A1-204ENST00000543140 RNASE2P10153 161 aaKnown RBP13.21□□□□□ -0.29
COL4A1-204ENST00000543140 ATP5G3P48201 142 aa13.21□□□□□ -0.29
COL4A1-204ENST00000543140 RAB1CQ92928 201 aa13.21□□□□□ -0.29
COL4A1-204ENST00000543140 SIRT7Q9NRC8 400 aa13.21□□□□□ -0.29
COL4A1-204ENST00000543140 IGKV1OR2-108A0A075B7D4 117 aa13.2□□□□□ -0.3
COL4A1-204ENST00000543140 IGLV2-23P01705 113 aa13.2□□□□□ -0.3
COL4A1-204ENST00000543140 S100A6P06703 90 aa13.2□□□□□ -0.3
COL4A1-204ENST00000543140 USF1P22415 310 aaPredicted RBP13.2□□□□□ -0.3
COL4A1-204ENST00000543140 MAS1LP35410 378 aa13.2□□□□□ -0.3
COL4A1-204ENST00000543140 PPOXP50336 477 aa13.2□□□□□ -0.3
COL4A1-204ENST00000543140 OR1L8Q8NGR8 309 aa13.2□□□□□ -0.3
COL4A1-204ENST00000543140 NEIL1Q96FI4 390 aaPredicted RBP13.2□□□□□ -0.3
COL4A1-204ENST00000543140 ZNF430Q9H8G1 570 aaPredicted RBP13.2□□□□□ -0.3
COL4A1-204ENST00000543140 IGHV2-26A0A0B4J1V2 119 aa13.2□□□□□ -0.3
COL4A1-204ENST00000543140 ACTL6BO94805 426 aa13.2□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 53.7 ms