RNA–Protein interactions for RNA: ENST00000542033.5

USP28-210, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 852 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-210ENST00000542033 THEM6Q8WUY1 208 aa2.39□□□□□ -2.03
USP28-210ENST00000542033 BLNKQ8WV28 456 aa2.39□□□□□ -2.03
USP28-210ENST00000542033 RPEQ96AT9 228 aa2.39□□□□□ -2.03
USP28-210ENST00000542033 DDIT4LQ96D03 193 aa2.39□□□□□ -2.03
USP28-210ENST00000542033 ZNF681Q96N22 645 aa2.39□□□□□ -2.03
USP28-210ENST00000542033 IP6K3Q96PC2 410 aa2.39□□□□□ -2.03
USP28-210ENST00000542033 DERL3Q96Q80 235 aa2.39□□□□□ -2.03
USP28-210ENST00000542033 TRIB3Q96RU7 358 aa2.39□□□□□ -2.03
USP28-210ENST00000542033 SLC25A21Q9BQT8 299 aaPredicted RBP2.39□□□□□ -2.03
USP28-210ENST00000542033 GABARAPL3Q9BY60 117 aa2.39□□□□□ -2.03
USP28-210ENST00000542033 KRTAP4-3Q9BYR4 195 aa2.39□□□□□ -2.03
USP28-210ENST00000542033 SMIM3Q9BZL3 60 aa2.39□□□□□ -2.03
USP28-210ENST00000542033 WDR61Q9GZS3 305 aaKnown RBP2.39□□□□□ -2.03
USP28-210ENST00000542033 TCEAL2Q9H3H9 227 aaPredicted RBP2.39□□□□□ -2.03
USP28-210ENST00000542033 REEP1Q9H902 201 aa2.39□□□□□ -2.03
USP28-210ENST00000542033 RDH14Q9HBH5 336 aa2.39□□□□□ -2.03
USP28-210ENST00000542033 RPRMQ9NS64 109 aa2.39□□□□□ -2.03
USP28-210ENST00000542033 COMMD9Q9P000 198 aa2.39□□□□□ -2.03
USP28-210ENST00000542033 ANXA10Q9UJ72 324 aa2.39□□□□□ -2.03
USP28-210ENST00000542033 CES1P1Q9UKY3 287 aa2.39□□□□□ -2.03
USP28-210ENST00000542033 LSM5Q9Y4Y9 91 aaKnown RBP2.39□□□□□ -2.03
USP28-210ENST00000542033 IER3IP1Q9Y5U9 82 aa2.39□□□□□ -2.03
USP28-210ENST00000542033 DUOX1Q9NRD9 1551 aa2.39□□□□□ -2.03
USP28-210ENST00000542033 QSER1Q2KHR3 1735 aa2.39□□□□□ -2.03
USP28-210ENST00000542033 DDX60LQ5H9U9 1706 aaKnown RBP2.39□□□□□ -2.03
USP28-210ENST00000542033 ARAP2Q8WZ64 1704 aa2.39□□□□□ -2.03
USP28-210ENST00000542033 PEAK1Q9H792 1746 aa2.39□□□□□ -2.03
USP28-210ENST00000542033 PXDNQ92626 1479 aa2.39□□□□□ -2.03
USP28-210ENST00000542033 SIPA1L3O60292 1781 aaPredicted RBP2.38□□□□□ -2.03
USP28-210ENST00000542033 MEGF6O75095 1541 aa2.38□□□□□ -2.03
USP28-210ENST00000542033 FOCADQ5VW36 1801 aa2.38□□□□□ -2.03
USP28-210ENST00000542033 TRBV6-7A0A0A0MS04 114 aa2.38□□□□□ -2.03
USP28-210ENST00000542033 A0A0B4J2E0 115 aa2.38□□□□□ -2.03
USP28-210ENST00000542033 TINCRA0A1B0GVN0 87 aa2.38□□□□□ -2.03
USP28-210ENST00000542033 A0A1B0GX12 115 aa2.38□□□□□ -2.03
USP28-210ENST00000542033 TRDV1A0A1B0GX56 115 aa2.38□□□□□ -2.03
USP28-210ENST00000542033 DUXBA0A1W2PPF3 345 aa2.38□□□□□ -2.03
USP28-210ENST00000542033 TLCD2A6NGC4 264 aa2.38□□□□□ -2.03
USP28-210ENST00000542033 UMAD1C9J7I0 102 aa2.38□□□□□ -2.03
USP28-210ENST00000542033 F8W1H4 67 aa2.38□□□□□ -2.03
USP28-210ENST00000542033 H7C1C5 153 aa2.38□□□□□ -2.03
USP28-210ENST00000542033 K7EP34 96 aa2.38□□□□□ -2.03
USP28-210ENST00000542033 M0R1X1 148 aa2.38□□□□□ -2.03
USP28-210ENST00000542033 XKRYO14609 159 aa2.38□□□□□ -2.03
USP28-210ENST00000542033 CDX4O14627 284 aaPredicted RBP2.38□□□□□ -2.03
USP28-210ENST00000542033 AGPAT2O15120 278 aa2.38□□□□□ -2.03
USP28-210ENST00000542033 HYPMO75409 117 aa2.38□□□□□ -2.03
USP28-210ENST00000542033 C1orf105O95561 183 aa2.38□□□□□ -2.03
USP28-210ENST00000542033 PTHP01270 115 aa2.38□□□□□ -2.03
USP28-210ENST00000542033 HLA-DRB1P01911 266 aa2.38□□□□□ -2.03
USP28-210ENST00000542033 C1QAP02745 245 aa2.38□□□□□ -2.03
USP28-210ENST00000542033 FGF1P05230 155 aa2.38□□□□□ -2.03
USP28-210ENST00000542033 DNAH10OSP0CZ25 163 aa2.38□□□□□ -2.03
USP28-210ENST00000542033 IGLL1P15814 213 aa2.38□□□□□ -2.03
USP28-210ENST00000542033 VDAC1P21796 283 aa2.38□□□□□ -2.03
USP28-210ENST00000542033 CDK2P24941 298 aa2.38□□□□□ -2.03
USP28-210ENST00000542033 HRH1P35367 487 aa2.38□□□□□ -2.03
USP28-210ENST00000542033 DRD3P35462 400 aa2.38□□□□□ -2.03
USP28-210ENST00000542033 FAUP35544 74 aaKnown RBP2.38□□□□□ -2.03
USP28-210ENST00000542033 ZNF93P35789 620 aaPredicted RBP2.38□□□□□ -2.03
USP28-210ENST00000542033 CA7P43166 264 aa2.38□□□□□ -2.03
USP28-210ENST00000542033 CXCL12P48061 93 aa2.38□□□□□ -2.03
USP28-210ENST00000542033 SLC25A1P53007 311 aa2.38□□□□□ -2.03
USP28-210ENST00000542033 TPPP2P59282 170 aa2.38□□□□□ -2.03
USP28-210ENST00000542033 TAS2R46P59540 309 aa2.38□□□□□ -2.03
USP28-210ENST00000542033 YPEL3P61236 119 aaPredicted RBP2.38□□□□□ -2.03
USP28-210ENST00000542033 HSPE1P61604 102 aaKnown RBP2.38□□□□□ -2.03
USP28-210ENST00000542033 SEC11AP67812 179 aa2.38□□□□□ -2.03
USP28-210ENST00000542033 ARG2P78540 354 aa2.38□□□□□ -2.03
USP28-210ENST00000542033 PSG9Q00887 426 aa2.38□□□□□ -2.03
USP28-210ENST00000542033 PSG4Q00888 419 aa2.38□□□□□ -2.03
USP28-210ENST00000542033 PSG7Q13046 419 aa2.38□□□□□ -2.03
USP28-210ENST00000542033 KLRD1Q13241 179 aa2.38□□□□□ -2.03
USP28-210ENST00000542033 ADIRFQ15847 76 aa2.38□□□□□ -2.03
USP28-210ENST00000542033 NSUN5P1Q3KNT7 163 aa2.38□□□□□ -2.03
USP28-210ENST00000542033 TDRG1Q3Y452 100 aa2.38□□□□□ -2.03
USP28-210ENST00000542033 NUP210LQ5VU65 1888 aa2.38□□□□□ -2.03
USP28-210ENST00000542033 TEX36Q5VZQ5 186 aa2.38□□□□□ -2.03
USP28-210ENST00000542033 TMEM215Q68D42 235 aa2.38□□□□□ -2.03
USP28-210ENST00000542033 AMMECR1LQ6DCA0 310 aa2.38□□□□□ -2.03
USP28-210ENST00000542033 OR2T5Q6IEZ7 315 aa2.38□□□□□ -2.03
USP28-210ENST00000542033 TNFAIP8L2Q6P589 184 aaPredicted RBP2.38□□□□□ -2.03
USP28-210ENST00000542033 GLIPR1L1Q6UWM5 242 aa2.38□□□□□ -2.03
USP28-210ENST00000542033 Q6ZS92 163 aa2.38□□□□□ -2.03
USP28-210ENST00000542033 KRTAP5-2Q701N4 177 aa2.38□□□□□ -2.03
USP28-210ENST00000542033 PKD1L3Q7Z443 1732 aa2.38□□□□□ -2.03
USP28-210ENST00000542033 FAM19A5Q7Z5A7 132 aaPredicted RBP2.38□□□□□ -2.03
USP28-210ENST00000542033 C1orf174Q8IYL3 243 aa2.38□□□□□ -2.03
USP28-210ENST00000542033 ZFP41Q8N8Y5 198 aa2.38□□□□□ -2.03
USP28-210ENST00000542033 ZDHHC22Q8N966 263 aa2.38□□□□□ -2.03
USP28-210ENST00000542033 OR2T29Q8NH02 315 aa2.38□□□□□ -2.03
USP28-210ENST00000542033 OR8S1Q8NH09 359 aa2.38□□□□□ -2.03
USP28-210ENST00000542033 PPTC7Q8NI37 304 aa2.38□□□□□ -2.03
USP28-210ENST00000542033 PLPPR1Q8TBJ4 325 aa2.38□□□□□ -2.03
USP28-210ENST00000542033 GTSF1Q8WW33 167 aa2.38□□□□□ -2.03
USP28-210ENST00000542033 NDRG1Q92597 394 aaKnown RBP2.38□□□□□ -2.03
USP28-210ENST00000542033 SNRNP25Q9BV90 132 aaKnown RBP2.38□□□□□ -2.03
USP28-210ENST00000542033 MRPL32Q9BYC8 188 aaKnown RBP2.38□□□□□ -2.03
USP28-210ENST00000542033 SLC17A9Q9BYT1 436 aa2.38□□□□□ -2.03
USP28-210ENST00000542033 POLR2J2Q9GZM3 115 aaKnown RBP2.38□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 77.2 ms