RNA–Protein interactions for RNA: ENST00000450966.5

USP40-208, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene USP40, Length 5,616 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-208ENST00000450966 ZNF501Q96CX3 271 aaPredicted RBP11.31□□□□□ -0.6
USP40-208ENST00000450966 C1RLQ9NZP8 487 aa11.31□□□□□ -0.6
USP40-208ENST00000450966 A0A1W2PRE2 83 aa11.31□□□□□ -0.6
USP40-208ENST00000450966 FAM90A10PA6NDY2 464 aa11.31□□□□□ -0.6
USP40-208ENST00000450966 FAM90A18PA6NE21 464 aa11.31□□□□□ -0.6
USP40-208ENST00000450966 FAM90A16PA6NEW6 464 aa11.31□□□□□ -0.6
USP40-208ENST00000450966 FAM90A20PA6NIJ5 464 aa11.31□□□□□ -0.6
USP40-208ENST00000450966 FAM90A8PA6NJQ4 464 aa11.31□□□□□ -0.6
USP40-208ENST00000450966 FAM90A7PA6NKC0 464 aa11.31□□□□□ -0.6
USP40-208ENST00000450966 FAM90A22PA8MWA6 464 aa11.31□□□□□ -0.6
USP40-208ENST00000450966 TMEM14DPA8MWL7 114 aa11.31□□□□□ -0.6
USP40-208ENST00000450966 FAM90A12PA8MX19 464 aa11.31□□□□□ -0.6
USP40-208ENST00000450966 FAM90A5PA8MXJ8 464 aa11.31□□□□□ -0.6
USP40-208ENST00000450966 FAM90A23PA8MXZ1 464 aa11.31□□□□□ -0.6
USP40-208ENST00000450966 FAM90A15PP0C7V4 464 aa11.31□□□□□ -0.6
USP40-208ENST00000450966 FAM90A13PP0C7W8 464 aa11.31□□□□□ -0.6
USP40-208ENST00000450966 FAM90A14PP0C7W9 464 aa11.31□□□□□ -0.6
USP40-208ENST00000450966 FAM90A24PP0C7X0 464 aa11.31□□□□□ -0.6
USP40-208ENST00000450966 PIGYQ3MUY2 71 aa11.31□□□□□ -0.6
USP40-208ENST00000450966 ATP5L2Q7Z4Y8 100 aa11.31□□□□□ -0.6
USP40-208ENST00000450966 NFAM1Q8NET5 270 aaPredicted RBP11.31□□□□□ -0.6
USP40-208ENST00000450966 ATP5G3P48201 142 aa11.31□□□□□ -0.6
USP40-208ENST00000450966 TMEM126AQ9H061 195 aa11.31□□□□□ -0.6
USP40-208ENST00000450966 IGHV2-26A0A0B4J1V2 119 aa11.31□□□□□ -0.6
USP40-208ENST00000450966 LGALS7P47929 136 aa11.31□□□□□ -0.6
USP40-208ENST00000450966 CRYBA4P53673 196 aa11.31□□□□□ -0.6
USP40-208ENST00000450966 Q0VG73 95 aa11.31□□□□□ -0.6
USP40-208ENST00000450966 MEIG1Q5JSS6 88 aa11.31□□□□□ -0.6
USP40-208ENST00000450966 STPG4Q8N801 248 aa11.31□□□□□ -0.6
USP40-208ENST00000450966 C18orf15Q96N68 181 aa11.31□□□□□ -0.6
USP40-208ENST00000450966 KIR2DL5BA0A0G2JN68 375 aa11.3□□□□□ -0.6
USP40-208ENST00000450966 KIR2DL5BA0A0G2JPC4 375 aa11.3□□□□□ -0.6
USP40-208ENST00000450966 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP11.3□□□□□ -0.6
USP40-208ENST00000450966 GUSBP1Q15486 140 aa11.3□□□□□ -0.6
USP40-208ENST00000450966 KIR2DL5AQ8N109 375 aa11.3□□□□□ -0.6
USP40-208ENST00000450966 PRSS27Q9BQR3 290 aa11.3□□□□□ -0.6
USP40-208ENST00000450966 RPP21Q9H633 154 aaKnown RBP11.3□□□□□ -0.6
USP40-208ENST00000450966 F2RL2O00254 374 aa11.3□□□□□ -0.6
USP40-208ENST00000450966 NGFRP08138 427 aa11.3□□□□□ -0.6
USP40-208ENST00000450966 PAPPA-AS1Q5QFB9 102 aa11.3□□□□□ -0.6
USP40-208ENST00000450966 RBPMS2Q6ZRY4 209 aaKnown RBP11.3□□□□□ -0.6
USP40-208ENST00000450966 ZNF415Q09FC8 603 aa11.3□□□□□ -0.6
USP40-208ENST00000450966 SPINK14Q6IE38 97 aa11.3□□□□□ -0.6
USP40-208ENST00000450966 Q8NFD4 153 aa11.3□□□□□ -0.6
USP40-208ENST00000450966 MBNL3Q9NUK0 354 aaKnown RBP11.3□□□□□ -0.6
USP40-208ENST00000450966 INSIG2Q9Y5U4 225 aa11.3□□□□□ -0.6
USP40-208ENST00000450966 KIF13BQ9NQT8 1826 aa11.3□□□□□ -0.6
USP40-208ENST00000450966 ATXN8Q156A1 80 aa11.3□□□□□ -0.6
USP40-208ENST00000450966 GAGE2AQ6NT46 116 aa11.3□□□□□ -0.6
USP40-208ENST00000450966 PRSS41Q7RTY9 318 aa11.3□□□□□ -0.6
USP40-208ENST00000450966 TRACP01848 142 aa11.29□□□□□ -0.6
USP40-208ENST00000450966 TEX43Q6ZNM6 134 aa11.29□□□□□ -0.6
USP40-208ENST00000450966 FAM60AQ9NP50 221 aa11.29□□□□□ -0.6
USP40-208ENST00000450966 MAP1BP46821 2468 aaKnown RBP11.29□□□□□ -0.6
USP40-208ENST00000450966 SPINT1O43278 529 aa11.29□□□□□ -0.6
USP40-208ENST00000450966 ORMDL3Q8N138 153 aa11.29□□□□□ -0.6
USP40-208ENST00000450966 FGFRL1Q8N441 504 aa11.29□□□□□ -0.6
USP40-208ENST00000450966 KIR3DL3Q8N743 410 aa11.29□□□□□ -0.6
USP40-208ENST00000450966 SYT8Q8NBV8 401 aa11.29□□□□□ -0.6
USP40-208ENST00000450966 NABP2Q9BQ15 211 aa11.29□□□□□ -0.6
USP40-208ENST00000450966 ZNF646O15015 1829 aaPredicted RBP11.29□□□□□ -0.6
USP40-208ENST00000450966 IGLV3-19P01714 112 aa11.29□□□□□ -0.6
USP40-208ENST00000450966 IGHV4-39P01824 125 aa11.29□□□□□ -0.6
USP40-208ENST00000450966 PRSS8Q16651 343 aa11.29□□□□□ -0.6
USP40-208ENST00000450966 SCNM1Q9BWG6 230 aa11.29□□□□□ -0.6
USP40-208ENST00000450966 RASL11BQ9BPW5 248 aa11.29□□□□□ -0.6
USP40-208ENST00000450966 CRIM1Q9NZV1 1036 aa11.29□□□□□ -0.6
USP40-208ENST00000450966 K7ESF4 209 aa11.29□□□□□ -0.6
USP40-208ENST00000450966 ZNF525Q8N782 197 aa11.29□□□□□ -0.6
USP40-208ENST00000450966 hDV102S1A0JD36 115 aa11.28□□□□□ -0.6
USP40-208ENST00000450966 SYS1-DBNDD2H3BUS1 97 aa11.28□□□□□ -0.6
USP40-208ENST00000450966 IGKCP01834 107 aa11.28□□□□□ -0.6
USP40-208ENST00000450966 CACNG7P62955 275 aa11.28□□□□□ -0.6
USP40-208ENST00000450966 EAF1Q96JC9 268 aaPredicted RBP11.28□□□□□ -0.6
USP40-208ENST00000450966 ADAMTSL1Q8N6G6 1762 aa11.28□□□□□ -0.6
USP40-208ENST00000450966 OR1L8Q8NGR8 309 aa11.28□□□□□ -0.6
USP40-208ENST00000450966 MRPS18CQ9Y3D5 142 aaKnown RBP11.28□□□□□ -0.6
USP40-208ENST00000450966 TRAV26-1A0A087WT03 109 aa11.28□□□□□ -0.6
USP40-208ENST00000450966 CLDN14O95500 239 aa11.28□□□□□ -0.6
USP40-208ENST00000450966 LIFP15018 202 aa11.28□□□□□ -0.6
USP40-208ENST00000450966 TIMP3P35625 211 aa11.28□□□□□ -0.6
USP40-208ENST00000450966 MRPS11P82912 194 aaKnown RBP11.28□□□□□ -0.6
USP40-208ENST00000450966 ZPLD1Q8TCW7 415 aa11.28□□□□□ -0.6
USP40-208ENST00000450966 GATAD1Q8WUU5 269 aa11.28□□□□□ -0.6
USP40-208ENST00000450966 IGHV3-43A0A0B4J1X8 118 aa11.27□□□□□ -0.6
USP40-208ENST00000450966 HIGD1CA8MV81 97 aa11.27□□□□□ -0.6
USP40-208ENST00000450966 IGHV3-43DP0DP04 118 aa11.27□□□□□ -0.6
USP40-208ENST00000450966 PRDX2P32119 198 aa11.27□□□□□ -0.6
USP40-208ENST00000450966 LCN12Q6JVE5 192 aa11.27□□□□□ -0.6
USP40-208ENST00000450966 FAM89BQ8N5H3 189 aa11.27□□□□□ -0.6
USP40-208ENST00000450966 MAGEA5P43359 124 aa11.27□□□□□ -0.6
USP40-208ENST00000450966 WDR31Q8NA23 367 aa11.27□□□□□ -0.6
USP40-208ENST00000450966 SELENOKQ9Y6D0 94 aa11.27□□□□□ -0.6
USP40-208ENST00000450966 CSRP3P50461 194 aa11.27□□□□□ -0.61
USP40-208ENST00000450966 TNXAQ16473 311 aa11.27□□□□□ -0.61
USP40-208ENST00000450966 SFTA2Q6UW10 78 aa11.27□□□□□ -0.61
USP40-208ENST00000450966 C1QCP02747 245 aa11.27□□□□□ -0.61
USP40-208ENST00000450966 C1QTNF4Q9BXJ3 329 aa11.27□□□□□ -0.61
USP40-208ENST00000450966 ERG28Q9UKR5 140 aa11.27□□□□□ -0.61
USP40-208ENST00000450966 J3KT08 172 aa11.26□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 72.6 ms